New transposon tools tailored for metabolic engineering of Gram-negative microbial cell factories

Frontiers in Bioengineering and Biotechnology

Volumn 2, Issue OCT, 2014, Pages

  Martínez García, Esteban ^a   Aparicio, Tomás ^a   de Lorenzo, Víctor ^a   Nikel, Pablo I ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

Central metabolism; Chromosomal integration; Escherichia coli; Metabolic engineering; Polyhydroxyalkanoates; Pseudomonas putida; Transposon mini Tn5

Indexed keywords

ANTIBIOTICS; BIODEGRADABLE POLYMERS; CELL ENGINEERING; CHROMOSOMES; CLONE CELLS; CLONING; COMPLEX NETWORKS; ESCHERICHIA COLI; GENES; METABOLIC ENGINEERING; METABOLISM; MOLECULAR BIOLOGY; PLASTICS APPLICATIONS; VECTORS;

CENTRAL METABOLISMS; CHROMOSOMAL INTEGRATION; POLYHYDROXYALKANOATES; PSEUDOMONAS PUTIDA; TRANSPOSON MINI-TN5;

BACTERIA;

EID: 84946019816     PISSN: None     EISSN: 22964185     Source Type: Journal    
DOI: 10.3389/fbioe.2014.00046     Document Type: Article

References (59)

1. Agnès, C., Holzinger, M., Le Goff, A., Reuillard, B., Elouarzaki, K., Tingry, S., et al. (2014). Supercapacitor/biofuel cell hybrids based on wired enzymes on carbon nanotube matrices: autonomous reloading after high power pulses in neutral buffered glucose solutions. Energy Environ. Sci. 7, 1884-1888. doi: 10.1039/C3EE43986K
2. Andoralov, V., Falk, M., Suyatin, D. B., Granmo, M., Sotres, J., Ludwig, R., et al. (2013). Biofuel cell operating in vivo in rat. Electroanalysis 25, 1579-1584. doi:10.1002/elan.201300136
3. Babanova, S., Artyushkova, K., Ulyanova, Y., Singhal, S., and Atanassov, P. (2014). Design of experiments and principal component analysis as approaches for enhancing performance of gas-diffusional air-breathing bilirubin oxidase cathode. J. Power Sources 245, 389-397. doi:10.1016/j.jpowsour.2013.06.031
4. Barton, S. C., Gallaway, J., and Atanassov, P. (2004). Enzymatic biofuel cells for implantable and microscale devices. Chem. Rev. 104, 4867-4886. doi:10.1021/cr020719k
5. Blanford, C. F., Foster, C. E., Heath, R. S., and Armstrong, F. A. (2009). Efficient electrocatalytic oxygen reduction by the 'blue' copper oxidase, laccase, directly attached to chemically modified carbons. Faraday Discuss. 140, 319-335. doi:10.1039/B808939F
6. Bourourou, M., Elouarzaki, K., Holzinger, M., Agnès, C., Le Goff, A., Reverdy-Bruas, N., et al. (2014). Freestanding redox buckypaper electrodes from multi-wall carbon nanotubes for bioelectrocatalytic oxygen reduction via mediated electron transfer. Chem. Sci. 5, 2885-2888. doi:10.1039/C3SC53544D
7. Bourourou, M., Elouarzaki, K., Lalaoui, N., Agnès, C., Le, G. offA., Holzinger, M., et al. (2013). Supramolecular immobilization of laccases on carbon nanotube electrodes functionalized with (methylpyrenylaminomethyl)anthraquinone for direct electron reduction of oxygen. Chemistry 19, 9371-9375. doi:10.1002/chem.201301043
8. Cheng, H., Yu, P., Lu, X., Lin, Y., Ohsaka, T., and Mao, L. (2013). Biofuel cell-based self-powered biogenerators for online continuous monitoring of neurochemicals in rat brain. Analyst 138, 179-185. doi:10.1039/C2AN36385B
9. Cinquin, P., Gondran, C., Giroud, F., Mazabrard, S., Pellissier, A., and Boucher, F. (2010). A glucose biofuel cell implanted in rats. PLoS ONE 5:e10476. doi:10.1371/journal.pone.0010476
10. Cosnier, S., Holzinger, M., Goff, A. L., and Zebda, A. (2010). Université Joseph Fourier-CNRS France patent number FR10.56672. 19 August 2010 extended PCT/FR10.56672/051931 (19/08/2010).
11. Cosnier, S., Le Goff, A., and Holzinger, M. (2014). Towards glucose biofuel cells implanted in human body for powering artificial organs: review. Electrochem. Commun. 38, 19-23. doi:10.1016/j.elecom.2013.09.021
12. Cracknell, J. A., Vincent, K. A., and Armstrong, F. A. (2008). Enzymes as working or inspirational electrocatalysts for fuel cells and electrolysis. Chem. Rev. 108, 2439-2461. doi:10.1021/cr0680639
13. Dai, H. (2002). Carbon nanotubes: synthesis, integration, and properties. Acc. Chem. Res. 35, 1035. doi:10.1021/ar0101640
14. Flexer, V., Brun, N., Destribats, M., Backov, R., and Mano, N. (2013). A novel three-dimensional macrocellular carbonaceous biofuel cell. Phys. Chem. Chem. Phys. 15, 6437-6445. doi:10.1039/C3CP50807B
15. Flexer, V., and Mano, N. (2014). Wired pyrroloquinoline quinone soluble glucose dehydrogenase enzyme electrodes operating at unprecedented low redox potential. Anal. Chem. 86, 2465-2473. doi:10.1021/ac403334w
16. Forster, R. J., Walsh, D. A., Mano, N., Mao, F., and Heller, A. (2003). Modulating the redox properties of an osmium-containing metallopolymer through the supporting electrolyte and cross-linking. Langmuir 20, 862-868. doi:10.1021/la035229h
17. Halámková, L., Halámek, J., Bocharova, V., Szczupak, A., Alfonta, L., and Katz, E. (2012). Implanted biofuel cell operating in a living snail. J. Am. Chem. Soc. 134, 5040-5043. doi:10.1021/ja211714w
18. Holzinger, M., Le Goff, A., and Cosnier, S. (2012). Carbon nanotube/enzyme biofuel cells. Electrochim. Acta 82, 179-190. doi:10.1016/j.electacta.2011.12.135
19. Hussein, L., Rubenwolf, S., von Tetten, S. F., Urban, G., Zengerle, R., Krueger, M., et al. (2011). A highly efficient buckypaper-based electrode material for mediatorless laccase-catalyzed dioxygen reduction. Biosens. Bioelectron. 26, 4133-4138. doi:10.1016/j.bios.2011.04.008
20. Ivanov, I., Vidakovic-Koch, T., and Sundmacher, K. (2010). Recent advances in enzymatic fuel cells: experiments and modeling. Energies 3, 803-846. doi:10.3390/en3040803
21. Jia, W., Valdés-Ramírez, G., Bandodkar, A. J., Windmiller, J. R., and Wang, J. (2013). Epidermal biofuel cells: energy harvesting from human perspiration. Angew. Chem. Int. Ed. 52, 7233-7236. doi:10.1002/anie.201302922
22. Katz, E., and MacVittie, K. (2013). Implanted biofuel cells operating in vivo-methods, applications and perspectives-feature article. Energy Environ. Sci. 6, 2791-2803. doi:10.1039/C3EE42126K
23. Lalaoui, N., Elouarzaki, K., Le Goff, A., Holzinger, M., and Cosnier, S. (2013). Efficient direct oxygen reduction by laccases attached and oriented on pyrene-functionalized polypyrrole/carbon nanotube electrodes. Chem. Commun. 49, 9281-9283. doi:10.1039/C3CC44994G
24. 2 reduction by multicopper oxidases. Adv. Energy Mat. 2, 162-168. doi:10.1002/aenm.201100433
25. Leech, D., Kavanagh, P., and Schuhmann, W. (2012). Enzymatic fuel cells: recent progress. Electrochim. Acta 84, 223-234. doi:10.1016/j.electacta.2012.02.087
26. Little, S. J., Ralph, S. F., Mano, N., Chen, J., and Wallace, G. G. (2011). A novel enzymatic bioelectrode system combining a redox hydrogel with a carbon NanoWeb. Chem. Commun. 47, 8886-8888. doi:10.1039/C1CC11088H
27. 2 biofuel cell and its operation in a living plant. J. Am. Chem. Soc. 125, 6588-6594. doi:10.1021/ja0346328
28. Meredith, M. T., Minson, M., Hickey, D., Artyushkova, K., Glatzhofer, D. T., and Minteer, S. D. (2011). Anthracene-modified multi-walled carbon nanotubes as direct electron transfer scaffolds for enzymatic oxygen reduction. ACS Catal. 1, 1683-1690. doi:10.1021/cs200475q
29. Meredith, M. T., and Minteer, S. D. (2012). Biofuel cells: enhanced enzymatic bioelectrocatalysis. Annu. Rev. Anal. Chem. 5, 157-179. doi:10.1146/annurev-anchem-062011-143049
30. Miyake, T., Yoshino, S., Yamada, T., Hata, K., and Nishizawa, M. (2011a). Self-regulating enzyme-nanotube ensemble films and their application as flexible electrodes for biofuel cells. J. Am. Chem. Soc. 133, 5129-5134. doi:10.1021/ja111517e
31. Miyake, T., Haneda, K., Nagai, N., Yatagawa, Y., Onami, H., Yoshino, S., et al. (2011b). Enzymatic biofuel cells designed for direct power generation from biofluids in living organisms. Energy Environ. Sci. 4, 5008-5012. doi:10.1039/C1EE02200H
32. Peigney, A., Laurent, C., Flahaut, E., Bacsa, R. R., and Rousset, A. (2001). Specific surface area of carbon nanotubes and bundles of carbon nanotubes. Carbon N. Y. 39, 507-514. doi:10.1016/S0008-6223(00)00155-X
33. Plumeré, N., Rüdiger, O., Oughli, A. A., Williams, R., Vivekananthan, J., Pöller, S., et al. (2014). A redox hydrogel protects hydrogenase from high-potential deactivation and oxygen damage. Nat. Chem. 6, 822-827. doi:10.1038/nchem.2022
34. Polsky, R., Brozik, S. M., Xiao, X., and Holland, J. T. (2001). Electrical "wiring" of enzymes. In: Webster JG, editor. Wiley Encyclopedia of Electrical and Electronics Engineering (New York: John Wiley & Sons, Inc.). p. 1-18.
35. Rasmussen, M., Ritzmann, R. E., Lee, I., Pollack, A. J., and Scherson, D. (2012). An implantable biofuel cell for a live insect. J. Am. Chem. Soc. 134, 1458-1460. doi:10.1021/ja210794c
36. Reuillard, B., Le, G. offA., Agnès, C., Holzinger, M., Zebda, A., Gondran, C., et al. (2013). High power enzymatic biofuel cell based on naphthoquinone-mediated oxidation of glucose by glucose oxidase in a carbon nanotube 3D matrix. Phys. Chem. Chem. Phys. 15, 4892-4896. doi:10.1039/C3CP50767J
37. Ronkainen, N. J., Halsall, H. B., and Heineman, W. R. (2010). Electrochemical biosensors. Chem. Soc. Rev. 39, 1747-1763. doi:10.1039/B714449K
38. Rubenwolf, S., Sané, S., Hussein, L., Kestel, J., von Tetten, S. F., Urban, G., et al. (2012). Prolongation of electrode lifetime in biofuel cells by periodic enzyme renewal. Appl. Microbiol. Biotechnol. 96, 841-849. doi:10.1007/s00253-012-4374-8
39. Sales, F. C. P. F., Iost, R. M., Martins, M. V. A., Almeida, M. C., and Crespilho, F. N. (2013). An intravenous implantable glucose/dioxygen biofuel cell with modified flexible carbon fiber electrodes. Lab. Chip 13, 468-474. doi:10.1039/C2LC41007A
40. Samanta, D., and Sarkar, A. (2011). Immobilization of bio-macromolecules on self-assembled monolayers: methods and sensor applications. Chem. Soc. Rev. 40, 2567-2592. doi:10.1039/C0CS00056F
41. Sané, S., Jolivalt, C., Mittler, G., Nielsen, P. J., Rubenwolf, S., Zengerle, R., et al. (2013). Overcoming bottlenecks of enzymatic biofuel cell cathodes: crude fungal culture supernatant can help to extend lifetime and reduce cost. ChemSusChem 6, 1114-1114. doi:10.1002/cssc.201300520
42. Sané, S., Richter, K., Rubenwolf, S., Matschke, N. J., Jolivalt, C., Madzak, C., et al. (2014). Using planktonic microorganisms to supply the unpurified multi-copper oxidases laccase and copper efflux oxidases at a biofuel cell cathode. Bioresour. Technol. 158, 231-238. doi:10.1016/j.biortech.2014.02.038
43. Shaoa, M., Guschina, D. A., Kawahb, Z., Beyla, Y., Stoicaa, L., and Ludwig, R. (2014). Cellobiose dehydrogenase entrapped within specifically designed Os-complex modified electrodeposition polymers as potential anodes for biofuel cells. Electrochim. Acta 128, 318-325. doi:10.1016/j.electacta.2013.11.019
44. Smart, S. K., Cassady, A. I., Lu, G. Q., and Martin, D. J. (2006). The biocompatibility of carbon nanotubes. Carbon N. Y. 44, 1034-1047. doi:10.1016/j.carbon.2005.10.011
45. 2-electroreduction biocatalyst superior to platinum and a biofuel cell operating at 0.88 V. J. Am. Chem. Soc. 126, 8368-8369. doi:10.1021/ja0475510
46. Southcott, M., MacVittie, K., Halámek, J., Halámková, L., Jemison, W. D., Lobel, R., et al. (2013). From "Cyborg" lobsters to a pacemaker powered by implantable biofuel cells. Energy Environ. Sci. 6, 81-86. doi:10.1039/C2EE23209J
47. Suraniti, E., Studer, V., Sojic, N., and Mano, N. (2011). Fast and easy enzyme immobilization by photoinitiated polymerization for efficient bioelectrochemical devices. Anal. Chem. 83, 2824-2828. doi:10.1021/ac200297r
48. Szczupak, A., Halámek, J., Halámková, L., Bocharova, V., Alfontac, L., and Katz, E. (2012). Living battery-biofuel cells operating in vivo in clams. Energy Environ. Sci. 5, 8891-8895. doi:10.1039/C2EE21626D
49. Valdés-Ramírez, G., Ya-Chieh, L., Kima, J., Jiaa, W., Bandodkara, A. J., and Nuñez-Flores, R. (2014). Microneedle-based self-powered glucose sensor. Electrochem. Commun. 47, 58-62. doi:10.1016/j.elecom.2014.07.014
50. 2 biofuel cell based on Pd aerogels. Chemistry 20, 4380-4385. doi:10.1002/chem.201304635
51. Willner, B., Katz, E., and Willner, I. (2006). Electrical contacting of redox proteins by nanotechnological means. Curr. Opin. Biotechnol. 17, 589-596. doi:10.1016/j.copbio.2006.10.008
52. Willner, I., Yan, Y.-M., Willner, B., and Tel-Vered, R. (2009). Integrated enzyme-based biofuel cells-a review. Fuel Cells 9, 7-24. doi:10.1002/fuce.200800115
53. Yahiro, A. T., Lee, S. M., and Kimble, D. O. (1964). Bioelectrochemistry: I. enzyme utilizing bio-fuel cell studies. Biochim Biophys Acta 88, 375-383. doi:10.1016/0926-6577(64)90192-5
54. Zayats, M., Willner, B., and Willner, I. (2008). Design of amperometric biosensors and biofuel cells by the reconstitution of electrically contacted enzyme electrodes. Electroanalysis 20, 583-601. doi:10.1002/elan.200704128
55. Zebda, A., Cosnier, S., Alcaraz, J. P., Holzinger, M., Le Goff, A., Gondran, C., et al. (2013). Single glucose biofuel cells implanted in rats power electronic devices. Sci. Rep. 3, 1516. doi:10.1038/srep01516
56. 2 biofuel cell. Electrochim. Acta 56, 10378-10384. doi:10.1016/j.electacta.2011.01.101
57. Zebda, A., Gondran, C., Le, G. offA., Holzinger, M., Cinquin, P., and Cosnier, S. (2011b). Mediatorless high-power glucose biofuel cells based on compressed carbon nanotube-enzyme electrodes. Nat. Commun. 2, 370. doi:10.1038/ncomms1365
58. Zhang, J. E. (2008). PEM Fuel Cell Electrocatalysts and Catalyst Layers: Fundamentals and Applications. Heidelberg: Springer-Verlag GmbH.
59. Zhang, Q., Huang, J.-Q., Qian, W.-Z., Zhang, Y.-Y., and Wei, F. (2013). The road for nanomaterials industry: a review of carbon nanotube production, post-treatment, and bulk applications for composites and energy storage. Small 9, 1237-1265. doi:10.1002/smll.201203252