Using molecular HIV surveillance data to understand transmission between subpopulations in the United States

Journal of Acquired Immune Deficiency Syndromes

Volumn 70, Issue 4, 2015, Pages 444-451

  Oster, Alexandra M ^a   Wertheim, Joel O ^b,c   Hernandez, Angela L ^a   Ocfemia, Marie Cheryl Bañez ^a   Saduvala, Neeraja ^b   Hall, H Irene ^d  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b ICF INTERNATIONAL   (United States)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^d NONE

Author keywords

HIV; Intravenous drug users; Men who have sex with men; Molecular epidemiology; Risk factors; Surveillance; Women

Indexed keywords

ADULT; AFRICAN AMERICAN; CONFERENCE PAPER; CONTROLLED STUDY; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; ETHNIC GROUP; ETHNICITY; FEMALE; GENETIC DISTANCE; HETEROSEXUAL FEMALE; HETEROSEXUAL MALE; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; MAJOR CLINICAL STUDY; MALE; MEN WHO HAVE SEX WITH MEN; MOLECULAR EPIDEMIOLOGY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; ADOLESCENT; AGED; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; EPIDEMIOLOGICAL MONITORING; GENETICS; HIV INFECTIONS; HUMAN IMMUNODEFICIENCY VIRUS 1; ISOLATION AND PURIFICATION; MIDDLE AGED; PROCEDURES; SEQUENCE HOMOLOGY; SEXUALITY; TRANSMISSION; UNITED STATES; YOUNG ADULT;

POL PROTEIN;

ADOLESCENT; ADULT; AGED; CLUSTER ANALYSIS; DISEASE TRANSMISSION, INFECTIOUS; EPIDEMIOLOGICAL MONITORING; ETHNIC GROUPS; FEMALE; HIV INFECTIONS; HIV-1; HUMANS; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; POL GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SEXUAL PARTNERS; UNITED STATES; YOUNG ADULT;

EID: 84945910965     PISSN: 15254135     EISSN: 10779450     Source Type: Journal    
DOI: 10.1097/QAI.0000000000000809     Document Type: Conference Paper

References (25)

1. Dennis AM, Herbeck JT, Brown AL, et al. Phylogenetic studies of transmission dynamics in generalized HIV epidemics: an essential tool where the burden is greatest? J Acquir Immune Defic Syndr. 2014;67: 181-95.
2. Hue S, Brown AE, Ragonnet-Cronin M, et al. Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions. AIDS. 2014;28:1967-1975.
3. Fitch WM. Networks and viral evolution. J Mol Evol. 1997;44(suppl 1): S65-S75.
4. Hughes GJ, Fearnhill E, Dunn D, et al. Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom. PLoS Pathog. 2009; 5:e1000590.
5. Leigh Brown AJ, Lycett SJ, Weinert L, et al. Transmission network parameters estimated from HIV sequences for a nationwide epidemic. J Infect Dis. 2011;204:1463-1469.
6. Wertheim JO, Leigh Brown AJ, Hepler NL, et al. The global transmission network of HIV-1. J Infect Dis. 2014;209:304-313.
7. Little SJ, Kosakovsky Pond SL, Anderson CM, et al. Using HIV networks to inform real time prevention interventions. PLoS One. 2014;9:e98443.
8. Fleming PL, Lansky A, Lee LM, et al. The epidemiology of HIV/AIDS in women in the southern United States. Sex Transm Dis. 2006;33: S32-S38.
9. Haverkos HW, Chung RC, Norville Perez LC. Is there an epidemic of HIV/AIDS among heterosexuals in the USA? Postgrad Med J. 2003;79: 444-448.
10. Holmes EC, Zhang LQ, Robertson P, et al. The molecular epidemiology of human immunodeficiency virus type 1 in Edinburgh. J Infect Dis. 1995;171:45-53.
11. Kouyos RD, von Wyl V, Yerly S, et al. Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. J Infect Dis. 2010;201:1488-1497.
12. Smith DM, May SJ, Tweeten S, et al. A public health model for the molecular surveillance of HIV transmission in San Diego, California. AIDS. 2009;23:225-232.
13. Oster AM, Pieniazek D, Zhang X, et al. Demographic but not geographic insularity in HIV transmission among young black MSM. AIDS. 2011; 25:2157-2165.
14. Aldous JL, Pond SK, Poon A, et al. Characterizing HIV transmission networks across the United States. Clin Infect Dis. 2012;55:1135-1143.
15. Dennis AM, Hue S, Hurt CB, et al. Phylogenetic insights into regional HIV transmission. AIDS. 2012;26:1813-1822.
16. Lewis F, Hughes GJ, Rambaut A, et al. Episodic sexual transmission of HIV revealed by molecular phylodynamics. Plos Med. 2008;5:e50.
17. Frentz D, Wensing AM, Albert J, et al. Limited cross-border infections in patients newly diagnosed with HIV in Europe. Retrovirology. 2013;10:36.
18. Wheeler WH, Ziebell RA, Zabina H, et al. Prevalence of transmitted drug resistance associated mutations and HIV-1 subtypes in new HIV-1 diagnoses, U.S.-2006. AIDS. 2010;24:1203-1212.
19. Wertheim JO, Kosakovsky Pond SL. Purifying selection can obscure the ancient age of viral lineages. Mol Biol Evol. 2011;28:3355-3365.
20. Harrison KM, Kajese T, Hall HI, et al. Risk factor redistribution of the national HIV/AIDS surveillance data: an alternative approach. Public Health Rep. 2008;123:618-627.
21. Glick SN, Golden MR. Persistence of racial differences in attitudes toward homosexuality in the United States. J Acquir Immune Defic Syndr. 2010;55:516-523.
22. Oster AM, Sternberg M, Nebenzahl S, et al. Prevalence of HIV, sexually transmitted infections, and viral hepatitis by urbanicity, among men who have sex with men, injection drug users, and heterosexuals in the United States. Sex Transm Dis. 2014;41:272-279.
23. Chan SK, Thornton LR, Chronister KJ, et al. Likely female-to-female sexual transmission of HIV-Texas, 2012. MMWR Morb Mortal Wkly Rep. 2014;63:209-212.
24. Sullivan PS, Peterson J, Rosenberg ES, et al. Understanding racial HIV/STI disparities in black and white men who have sex with men: a multilevel approach. PLoS One. 2014;9:e90514.
25. Centers for Disease Control and Prevention. Estimated HIV incidence in the United States, 2007-2010. HIV Surveillance Supplemental Report 2012;17(No. 4). http://www.cdc.gov/hiv/topics/surveillance/resources/reports/#supplemental. Published December 2012.