Plant genetic resources collections and associated information as a baseline resource for genetic diversity studies: an assessment of the IBPGR-supported collections

Genetic Resources and Crop Evolution

Volumn 62, Issue 8, 2015, Pages 1279-1293

  Thormann, I ^a   Fiorino, E ^b   Halewood, M ^a   Engels, J M M ^a  

^a BIOVERSITY INTERNATIONAL   (Italy)

^b NONE   (Italy)

Author keywords

Collecting missions; Crop wild relatives; Ex situ conservation; Genetic erosion; International Board for Plant Genetic Resources; Landraces; Monitoring; Temporal variation

Indexed keywords

CONSERVATION STATUS; CROP; GENETIC RESOURCE; PLANT; SAMPLING; TEMPORAL VARIATION; TIME SERIES;

EID: 84945482303     PISSN: 09259864     EISSN: 15735109     Source Type: Journal    
DOI: 10.1007/s10722-015-0231-9     Document Type: Article

References (55)

1. Akimoto M, Shimamoto Y, Morishima H (1999) The extinction of genetic resources of Asian wild rice, Oryza rufipogon Griff.: a case study in Thailand. Genet Resour Crop Evol 46:419–425
2. Alercia A, Diulgheroff S, Mackay M (2012) FAO/Bioversity multi-crop passport descriptors (MCPD V.2). Food and Agriculture Organization. Rome and Bioversity International, Rome
3. Barry MB, Pham JL, Béavogui S, Ghesquière A, Ahmadi N (2008) Diachronic (1979–2003) analysis of rice genetic diversity in Guinea did not reveal genetic erosion. Genet Resour Crop Evol 55(5):723–733
4. Bezançon G, Pham JL, Deu M, Vigouroux Y, Sagnard F, Mariac C, Kapran I, Mamadou A, Gérard B, Ndjeunga J, Chantereau J (2009) Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum (L.) R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between, 1976 and 2003. Genet Resour Crop Evol 56(2):223–236
5. Brown AHD, Marshall DR (1995) A basic sampling strategy: theory and practice. In: Guarino L, Ramanatha Rao V, Robert Reid R (eds) Collecting plant diversity: technical guidelines. CAB International, London, pp 75–91
6. Calinger KM, Queenborough S, Curtis PS (2013) Herbarium specimens reveal the footprint of climate change on flowering trends across north-central North America. Ecol Lett 16:1037–1044
7. CGIAR (1972) The collection, evaluation and conservation of plant genetic resources. Report of TAC Ad Hoc Working Group held in Beltsville, USA, 20–25 March 1972. Food and Agriculture Organization, Rome
8. Crossa J, Vencovsky R (2011) Basic sampling strategies: theory and practice. In: Guarino L, Ramanatha Rao V, Goldberg E (eds) Collecting plant genetic diversity: technical guidelines—2011 update. Bioversity International, Rome
9. Davis MB, Shaw RG, Etterson JR (2005) Evolutionary responses to changing climate. Ecology 86:1704–1714
10. del Rio AH, Bamberg JB, Huaman Z, Salas A, Vega SE (1997) Assessing changes in the genetic diversity of potato genebanks: in situ versus ex situ. Theor Appl Genet 95:199–204
11. Deu M, Sagnard F, Chantereau J, Calatayud C, Hérault D, Mariac C, Pham JL, Vigouroux Y, Kapran I, Traore PS, Mamadou A, Gerard B, Ndjeunga J, Bezançon J (2008) Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theor Appl Genet 116:903–913
12. Deu M, Sagnard F, Chantereau J, Calatayud C, Vigouroux Y, Pham JL, Mariac C, Kapran I, Mamadou A, Gérard B, Ndjeunga J, Bezançon G (2010) Spatio-temporal dynamics of genetic diversity in Sorghumbicolor in Niger. Theor and Appl Genet 120(7):1301–1313
13. Dosmann M, Groover A (2012) The importance of living botanical collections for plant biology and the ‘next generation’ of evo-devo research. Front Plant Sci 3:1–5
14. FAO (1998) The state of the world’s plant genetic resources for food and agriculture. Food and Agriculture Organization, Rome
15. FAO (2010) The second report on the state of the world’s plant genetic resources for food and agriculture. Food and Agriculture Organization, Rome
16. FAO (2012) Second Global Plan of Action for Plant Genetic Resources for Food and Agriculture. Food and Agriculture Organization, Rome
17. FAO, IPGRI (1994) Genebank standards. Food and Agriculture Organization. Rome and International Plant Genetic Resources Institute, Rome
18. FAO, IPGRI (2001) Multi-crop passport descriptors. Food and Agriculture Organization. Rome and International Plant Genetic Resources Institute, Rome
19. Franks SJ, Sim S, Weis AE (2007) Rapid evolution of flowering time by an annual plant in response to a climate fluctuation. PNAS 104:1278–1282
20. Franks SJ, Avise JC, Bradshaw WE, Conner JK, Etterson JR, Mazer SJ, Shaw RG, Weis AE (2008) The resurrection initiative: storing ancestral genotypes to capture evolution in action. Bioscience 58(9):870–873. doi:10.1641/B580913
21. Gallagher RV, Hughes L, Leishman MR (2009) Phenological trends among Australian alpine species: using herbarium records to identify climate-change indicators. Aust J Bot 57:1–9
22. Gao L, Chen W, Jiang W, Ge S, Hong D, Wang X (2000) Genetic erosion in northern marginal population of the common wild rice Oryza rufipogon Griff. and its conservation, revealed by the change of population genetic structure. Hereditas 133(1):47–53
23. Greene SL, Kisha TJ, Long Xi Yu, Parra-Quijano M (2014) Conserving plants in genebanks and nature: investigating complementarity with Trifolium thompsonii Morton. PLoS One 9(8):e105145. doi:10.1371/journal.pone.0105145
24. Hammer K, Laghetti G (2005) Genetic erosion: examples from Italy. Genet Resour Crop Evol 52:629–634
25. Hammer K, Knüpffer K, Xhuveli L, Perrino P (1996) Estimating genetic erosion in landraces: two case studies. Genet Resour Crop Evol 43:329–336
26. Hanson J, Williams JT, Freund R (1984) Institutes conserving crop germplasm: the IBPGR global network of genebanks. IBPGR Secretariat, Rome
27. Hart R, Salick J, Ranjitkar S, Xu J (2014) Herbarium specimens show contrasting phenological responses to Himalayan climate. PNAS 111(29):10615–10619
28. Hazekamp T, Payne TS, Sackville Hamilton NR (2014) Assessing rice and wheat germplasm collections using similarity groups. Genet Resour Crop Evol 61:841–851
29. Hirano R, Jatoi SA, Kawase M, Kikuchi A, Watanabe N (2009) Consequences of ex situ conservation on the genetic integrity of germplasm held at different genebanks: a case study of bread wheat collected in Pakistan. Crop Sci 49:2160–2166
30. IBPGR (1987) Annual report 1986. International Board for Plant Genetic Resources, Rome
31. IBPGR (1990) Annual report 1989. International Board for Plant Genetic Resources, Rome
32. IBPGR (1991) Annual report 1990. International Board for Plant Genetic Resources, Rome
33. CBD Online. Aichi Biodiversity Targets. Convention on Biological Diversity. http://www.cbd.int/sp/targets/ Accessed 17 July 2014
34. Jarvis A, Lane A, Hijmans RJ (2008) The effect of climate change on crop wild relatives. Agric Ecosyst Environ 126:13–23
35. Keisa A, Maxted N, Ford-Lloyd B (2008) The assessment of biodiversity loss over time: wild legumes in Syria. Genet Resour Crop Evol 55:603–612
36. Kwak M, Gepts P (2009) Structure of genetic diversity in the two major gene pools of common bean (Phaseolus vulgaris L., Fabaceae). Theor Appl Genet 118:979–992
37. Li Z, Wu N, Gao X, Wu Y, Oli KP (2013) Species-level phonological responses to ‘global warming’ as evidenced by herbarium collections in the Tibetan autonomous region. Biodivers Cons 22:141–152
38. Magurran AE, Baillie SR, Buckland ST, Dick JM, Elston DA, Scott EM, Smith RI, Somerfield PJ, Watt AD (2010) Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends Ecol Evol 25:574–582
39. Maxted M, Guarino L (2006) Genetic erosion and genetic pollution of crop wild relatives. In: Ford-Lloyd BV, Dias SR, Bettencourt E (eds) Genetic erosion and pollution assessment methodologies. Proceedings of PGR Forum Workshop 5, Terceira Island, Autonomous Region of the Azores, Portugal, 8–11 September 2004. Published on behalf of the European Crop Wild Relative Diversity Assessment and Conservation Forum, Bioversity International, Rome, pp 35–46
40. Maxted N, Kell SP (2009) Establishment of a global network for the in situ conservation of crop wild relatives: status and needs. FAO Commission on Genetic Resources for Food and Agriculture, Rome
41. Mekbib F (2008) Genetic erosion of sorghum (Sorghum bicolor (L.) Moench) in the centre of diversity. Ethiopia. Genet Resour Crop Evol 55:351–364
42. Miller-Rushing AJ, Primack RB, Primack D, Mukunda S (2006) Photographs and herbarium specimens as tools to document phonological changes in response to global warming. Am J Bot 93:1667–1674
43. Nevo E, Fu YB, Pavlicek T, Khalifa S, Tavasi M, Beiles A (2012) Evolution of wild cereals during 28 years of global warming in Israel. PNAS 109(9):3412–3415
44. Primack D, Imbres C, Primack RB, Miller-Rushing AJ, Tredici PD (2004) Herbarium specimens demonstrate earlier flowering times in response to warming in Boston. Am J Bot 91:1260–1264
45. Rocha F, Bettencourt E, Gaspar C (2008) Genetic erosion assessment through the re-collecting of crop germplasm: counties of Arcos de Valdevez, Melgaço, Montalegre, Ponte da Barca and Terras de Bouro (Portugal). Plant Genet Resour Newsl 154:6–13
46. Sharrock S (2012) Global strategy for plant conservation: a guide to the GSPC, all the targets, objectives and facts. Botanic Gardens Conservation International, London
47. Tao K, Williams JT, van Sloten D (1989) Base collections of crop genetic resources: their future importance in a man-dominated world. Environ Cons 16(4):311–316
48. Teklu Y, Hammer K (2006) Farmers’ perception and genetic erosion of tetraploid wheats landraces in Ethiopia. Genet Resour Crop Evol 53:1099–1113
49. Thormann I, Engels JMM (2001) IBPGR/IPGRI register of base collections: Annex VII. In: IPGRI (ed) Development of a scientifically sound and financially sustainable global genebank system. Final report on the technical research phase. System-wide Genetic Resources Program, Rome
50. Thormann I, Gaisberger H, Mattei F, Snook L, Arnaud E (2012) Digitization and online availability of original collecting mission data to improve data quality and enhance the conservation and use of plant genetic resources. Genet Resour Crop Evol 59(5):635–644
51. van de Wouw M, Kik C, van Hintum T, van Treuren R, Visser B (2010) Genetic erosion in crops: concept, research, results and challenges. Plant Genet Resour 8(1):1–15
52. van de Wouw M, van Treuren R, van Hintum T (2011) Authenticity of old cultivars in genebank collections: a case study on lettuce. Crop Sci 51:736–746
53. Vellend M, Brown CD, Kharouba HM, Mccune JI, Myers-Smith IH (2013) Historical ecology: using unconventional data sources to test for effects of global environmental change. Am J of Bot 100(7):1294–1305
54. Vigouroux Y, Mariac C, De Mita S, Pham JL, Gerard B, Kapran I, Sagnard F, Deu M, Chantereau J, Ali A, Ndjeunga J, Luong V, Thuillet A, Saidou A, Bezancon G (2011) Selection for earlier flowering crop associated with climatic variations in the Sahel. PLoS One 6(5):1–9
55. Wandeler P, Hoeck PEA, Keller KF (2007) Back to the future: museum specimens in population genetics. Trends Ecol Evol 22(12):634–642