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Volumn 128, Issue 11, 2015, Pages 2189-2201

Forecasting the accuracy of genomic prediction with different selection targets in the training and prediction set as well as truncation selection

Author keywords

[No Author keywords available]

Indexed keywords

GENES;

EID: 84945464728     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-015-2577-y     Document Type: Article
Times cited : (9)

References (50)
  • 1
    • 85027919900 scopus 로고    scopus 로고
    • Genome-based prediction of testcross values in maize
    • PID: 21505832
    • Albrecht T, Wimmer V, Auinger H et al (2011) Genome-based prediction of testcross values in maize. Theor Appl Genet 123:339–350
    • (2011) Theor Appl Genet , vol.123 , pp. 339-350
    • Albrecht, T.1    Wimmer, V.2    Auinger, H.3
  • 2
    • 84901610057 scopus 로고    scopus 로고
    • Genome-based prediction of maize hybrid performance across genetic groups, testers, locations, and years
    • PID: 24723140
    • Albrecht T, Auinger H-J, Wimmer V et al (2014) Genome-based prediction of maize hybrid performance across genetic groups, testers, locations, and years. Theor Appl Genet 127:1375–1386
    • (2014) Theor Appl Genet , vol.127 , pp. 1375-1386
    • Albrecht, T.1    Auinger, H.-J.2    Wimmer, V.3
  • 3
    • 77955166399 scopus 로고    scopus 로고
    • Population structure and cryptic relatedness in genetic association studies
    • Astle W, Balding DJ (2009) Population structure and cryptic relatedness in genetic association studies. Stat Sci 24:451–471
    • (2009) Stat Sci , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.J.2
  • 4
    • 84863564102 scopus 로고    scopus 로고
    • Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures
    • PID: 22273519
    • Bastiaansen JWM, Coster A, Calus MPL et al (2012) Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures. Genet Sel Evol 44:3
    • (2012) Genet Sel Evol , vol.44 , pp. 3
    • Bastiaansen, J.W.M.1    Coster, A.2    Calus, M.P.L.3
  • 5
    • 54949113665 scopus 로고    scopus 로고
    • Molecular markers and selection for complex traits in plants: learning from the last 20 years
    • Bernardo R (2008) Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci 48:1649–1664
    • (2008) Crop Sci , vol.48 , pp. 1649-1664
    • Bernardo, R.1
  • 6
    • 34548176501 scopus 로고    scopus 로고
    • Prospects for genomewide selection for quantitative traits in maize
    • Bernardo R, Yu J (2007) Prospects for genomewide selection for quantitative traits in maize. Crop Sci 47:1082–1090
    • (2007) Crop Sci , vol.47 , pp. 1082-1090
    • Bernardo, R.1    Yu, J.2
  • 7
    • 84945454737 scopus 로고
    • Improvement by means of selection. In: Proceedings of second Berkeley symposium on mathematical statistics and probability, University of California Press
    • Cochran WG (1950) Improvement by means of selection. In: Proceedings of second Berkeley symposium on mathematical statistics and probability, University of California Press, pp 449–470
    • (1950) pp 449–470
    • Cochran, W.G.1
  • 8
    • 36849039475 scopus 로고    scopus 로고
    • Prediction of response to marker-assisted and genomic selection using selection index theory
    • COI: 1:STN:280:DC%2BD2sjjvFyiuw%3D%3D
    • Dekkers JCM (2007) Prediction of response to marker-assisted and genomic selection using selection index theory. Genetics 124:331–341
    • (2007) Genetics , vol.124 , pp. 331-341
    • Dekkers, J.C.M.1
  • 9
    • 1842740737 scopus 로고    scopus 로고
    • Marker-based estimates of between and within population kinships for the conservation of genetic diversity
    • COI: 1:CAS:528:DC%2BD3MXlvVKju7g%3D
    • Eding H, Meuwissen T (2001) Marker-based estimates of between and within population kinships for the conservation of genetic diversity. J Anim Breed Genet 118:141–159
    • (2001) J Anim Breed Genet , vol.118 , pp. 141-159
    • Eding, H.1    Meuwissen, T.2
  • 10
    • 85136354327 scopus 로고    scopus 로고
    • Ridge regression and other kernels for genomic selection with R package rrBLUP
    • Endelman JB (2011) Ridge regression and other kernels for genomic selection with R package rrBLUP. Plant Genome 4:250–255
    • (2011) Plant Genome , vol.4 , pp. 250-255
    • Endelman, J.B.1
  • 13
    • 82955201636 scopus 로고    scopus 로고
    • A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome
    • COI: 1:CAS:528:DC%2BC3MXhs1OqurzJ, PID: 22174790
    • Ganal MW, Durstewitz G, Polley A et al (2011) A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One 6:e28334
    • (2011) PLoS One , vol.6 , pp. e28334
    • Ganal, M.W.1    Durstewitz, G.2    Polley, A.3
  • 14
    • 84857654213 scopus 로고    scopus 로고
    • ASReml user guide release 3.0
    • VSN International Ltd, Hemel Hempstead
    • Gilmour A, Gogel B, Cullis B, Thompson R (2009) ASReml user guide release 3.0. VSN International Ltd, Hemel Hempstead
    • (2009)
    • Gilmour, A.1    Gogel, B.2    Cullis, B.3    Thompson, R.4
  • 15
    • 84863789973 scopus 로고    scopus 로고
    • Breeding maize as biogas substrate in Central Europe: I. Quantitative-genetic parameters for testcross performance
    • PID: 22159756
    • Grieder C, Dhillon BS, Schipprack W, Melchinger AE (2012a) Breeding maize as biogas substrate in Central Europe: I. Quantitative-genetic parameters for testcross performance. Theor Appl Genet 124:971–980
    • (2012) Theor Appl Genet , vol.124 , pp. 971-980
    • Grieder, C.1    Dhillon, B.S.2    Schipprack, W.3    Melchinger, A.E.4
  • 16
    • 84863797483 scopus 로고    scopus 로고
    • Breeding maize as biogas substrate in Central Europe: II. Quantitative-genetic parameters for inbred lines and correlations with testcross performance
    • PID: 22159757
    • Grieder C, Dhillon BS, Schipprack W, Melchinger AE (2012b) Breeding maize as biogas substrate in Central Europe: II. Quantitative-genetic parameters for inbred lines and correlations with testcross performance. Theor Appl Genet 124:981–988
    • (2012) Theor Appl Genet , vol.124 , pp. 981-988
    • Grieder, C.1    Dhillon, B.S.2    Schipprack, W.3    Melchinger, A.E.4
  • 17
    • 37249083895 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genome-assisted breeding values
    • COI: 1:CAS:528:DC%2BD1cXhtlCjsb4%3D, PID: 18073436
    • Habier D, Fernando RL, Dekkers JCM (2007) The impact of genetic relationship information on genome-assisted breeding values. Genetics 177:2389–2397
    • (2007) Genetics , vol.177 , pp. 2389-2397
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.M.3
  • 18
    • 77952787476 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genomic breeding values in German Holstein cattle
    • PID: 20170500
    • Habier D, Tetens J, Seefried F et al (2010) The impact of genetic relationship information on genomic breeding values in German Holstein cattle. Genet Sel Evol 42:5
    • (2010) Genet Sel Evol , vol.42 , pp. 5
    • Habier, D.1    Tetens, J.2    Seefried, F.3
  • 19
    • 84879774670 scopus 로고    scopus 로고
    • Genomic BLUP decoded: a look into the black box of genomic prediction
    • COI: 1:CAS:528:DC%2BC3sXht1ChsrnO, PID: 23640517
    • Habier D, Fernando RL, Garrick DJ (2013) Genomic BLUP decoded: a look into the black box of genomic prediction. Genetics 194:597–607
    • (2013) Genetics , vol.194 , pp. 597-607
    • Habier, D.1    Fernando, R.L.2    Garrick, D.J.3
  • 20
    • 0002401719 scopus 로고
    • Methods used in developing maize inbreds
    • Hallauer AR (1990) Methods used in developing maize inbreds. Maydica 35:1–16
    • (1990) Maydica , vol.35 , pp. 1-16
    • Hallauer, A.R.1
  • 21
    • 59249106951 scopus 로고    scopus 로고
    • Genomic selection for crop improvement
    • COI: 1:CAS:528:DC%2BD1MXjsF2it78%3D
    • Heffner EL, Sorrells ME, Jannink J-L (2009) Genomic selection for crop improvement. Crop Sci 49:1–12
    • (2009) Crop Sci , vol.49 , pp. 1-12
    • Heffner, E.L.1    Sorrells, M.E.2    Jannink, J.-L.3
  • 22
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • COI: 1:STN:280:DC%2BC2czotlSqtg%3D%3D, PID: 24442307
    • Hill WG, Robertson A (1968) Linkage disequilibrium in finite populations. Theor Appl Genet 38:226–231
    • (1968) Theor Appl Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 23
    • 78049395924 scopus 로고    scopus 로고
    • Dynamics of long-term genomic selection
    • PID: 20712894
    • Jannink J-L (2010) Dynamics of long-term genomic selection. Genet Sel Evol 42:35
    • (2010) Genet Sel Evol , vol.42 , pp. 35
    • Jannink, J.-L.1
  • 24
    • 77951987956 scopus 로고    scopus 로고
    • Genomic selection in plant breeding: from theory to practice
    • COI: 1:CAS:528:DC%2BC3cXjvF2hu7Y%3D
    • Jannink J-L, Lorenz AJ, Iwata H (2010) Genomic selection in plant breeding: from theory to practice. Brief Funct Genomics Proteomics 9:166–177
    • (2010) Brief Funct Genomics Proteomics , vol.9 , pp. 166-177
    • Jannink, J.-L.1    Lorenz, A.J.2    Iwata, H.3
  • 25
    • 84862183331 scopus 로고    scopus 로고
    • Partitioning additive genetic variance into genomic and remaining polygenic components for complex traits in dairy cattle
    • COI: 1:CAS:528:DC%2BC38XhslWjt7%2FI, PID: 22694746
    • Jensen J, Su G, Madsen P (2012) Partitioning additive genetic variance into genomic and remaining polygenic components for complex traits in dairy cattle. BMC Genet 13:44
    • (2012) BMC Genet , vol.13 , pp. 44
    • Jensen, J.1    Su, G.2    Madsen, P.3
  • 26
    • 0028835379 scopus 로고
    • Epistasis in an elite maize hybrid and choice of generation for inbred line development
    • Lamkey KR, Schnicker BJ, Melchinger AE (1995) Epistasis in an elite maize hybrid and choice of generation for inbred line development. Crop Sci 35:1272–1281
    • (1995) Crop Sci , vol.35 , pp. 1272-1281
    • Lamkey, K.R.1    Schnicker, B.J.2    Melchinger, A.E.3
  • 27
    • 0025217786 scopus 로고
    • Efficiency of marker-assisted selection in the improvement of quantitative traits
    • COI: 1:STN:280:DyaK3c7osFWmsA%3D%3D, PID: 1968875
    • Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743–756
    • (1990) Genetics , vol.124 , pp. 743-756
    • Lande, R.1    Thompson, R.2
  • 28
    • 84908010121 scopus 로고    scopus 로고
    • Usefulness of multi-parental populations of maize (Zea mays L.) for genome-based prediction
    • PID: 25236445
    • Lehermeier C, Krämer N, Bauer E et al (2014) Usefulness of multi-parental populations of maize (Zea mays L.) for genome-based prediction. Genetics 198:3–16
    • (2014) Genetics , vol.198 , pp. 3-16
    • Lehermeier, C.1    Krämer, N.2    Bauer, E.3
  • 30
    • 0031833578 scopus 로고    scopus 로고
    • Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in
    • COI: 1:CAS:528:DyaK1cXks1ektb8%3D, PID: 9584111
    • Melchinger AE, Utz H, Schön C-C (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in. Genetics 149:383–403
    • (1998) Genetics , vol.149 , pp. 383-403
    • Melchinger, A.E.1    Utz, H.2    Schön, C.-C.3
  • 31
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • COI: 1:CAS:528:DC%2BD3MXjsFemtbY%3D, PID: 11290733
    • Meuwissen THE, Hayes BJ, Goddard ME (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819–1829
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 32
    • 84903127012 scopus 로고    scopus 로고
    • Optimizing resource allocation for multistage selection in plant breeding with r package
    • Mi X, Utz HF, Technow F, Melchinger AE (2014) Optimizing resource allocation for multistage selection in plant breeding with r package. Crop Sci 54:1413–1418
    • (2014) Crop Sci , vol.54 , pp. 1413-1418
    • Mi, X.1    Utz, H.F.2    Technow, F.3    Melchinger, A.E.4
  • 33
    • 12344277777 scopus 로고    scopus 로고
    • Correlations and QTL correspondence between line per se and testcross performance for agronomic traits in four populations of European maize
    • Mihaljevic R, Schön C-C, Utz HF, Melchinger AE (2005a) Correlations and QTL correspondence between line per se and testcross performance for agronomic traits in four populations of European maize. Crop Sci 45:114–122
    • (2005) Crop Sci , vol.45 , pp. 114-122
    • Mihaljevic, R.1    Schön, C.-C.2    Utz, H.F.3    Melchinger, A.E.4
  • 34
    • 27644492052 scopus 로고    scopus 로고
    • No evidence for epistasis in hybrid and per se performance of elite European flint maize inbreeds from generation means and QTL analyses
    • Mihaljevic R, Utz HF, Melchinger AE (2005b) No evidence for epistasis in hybrid and per se performance of elite European flint maize inbreeds from generation means and QTL analyses. Crop Sci 45:2605–2613
    • (2005) Crop Sci , vol.45 , pp. 2605-2613
    • Mihaljevic, R.1    Utz, H.F.2    Melchinger, A.E.3
  • 35
    • 36849052938 scopus 로고    scopus 로고
    • Comparison of genomic and traditional BLUP-estimated breeding value accuracy and selection response under alternative trait and genomic parameters
    • COI: 1:STN:280:DC%2BD2sjjvFyhsg%3D%3D, PID: 18076471
    • Muir WM (2007) Comparison of genomic and traditional BLUP-estimated breeding value accuracy and selection response under alternative trait and genomic parameters. J Anim Breed Genet 124:342–355
    • (2007) J Anim Breed Genet , vol.124 , pp. 342-355
    • Muir, W.M.1
  • 36
    • 34547122012 scopus 로고    scopus 로고
    • Impact of interpopulation divergence on additive and dominance variance in hybrid populations
    • COI: 1:STN:280:DC%2BD2svitFGrtg%3D%3D, PID: 17507673
    • Reif JC, Gumpert F-M, Fischer S, Melchinger AE (2007) Impact of interpopulation divergence on additive and dominance variance in hybrid populations. Genetics 176:1931–1934
    • (2007) Genetics , vol.176 , pp. 1931-1934
    • Reif, J.C.1    Gumpert, F.-M.2    Fischer, S.3    Melchinger, A.E.4
  • 37
    • 84887616822 scopus 로고    scopus 로고
    • Optimizing the allocation of resources for genomic selection in one breeding cycle
    • COI: 1:CAS:528:DC%2BC3sXhslWhur%2FO, PID: 23982591
    • Riedelsheimer C, Melchinger AE (2013) Optimizing the allocation of resources for genomic selection in one breeding cycle. Theor Appl Genet 126:2835–2848
    • (2013) Theor Appl Genet , vol.126 , pp. 2835-2848
    • Riedelsheimer, C.1    Melchinger, A.E.2
  • 38
    • 84856283792 scopus 로고    scopus 로고
    • Genomic and metabolic prediction of complex heterotic traits in hybrid maize
    • COI: 1:CAS:528:DC%2BC38Xnt1Omug%3D%3D, PID: 22246502
    • Riedelsheimer C, Czedik-Eysenberg A, Grieder C et al (2012) Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet 44:217–220
    • (2012) Nat Genet , vol.44 , pp. 217-220
    • Riedelsheimer, C.1    Czedik-Eysenberg, A.2    Grieder, C.3
  • 39
    • 84878617144 scopus 로고    scopus 로고
    • Genomic predictability of interconnected bi-parental maize populations
    • PID: 23535384
    • Riedelsheimer C, Endelman JB, Stange M et al (2013) Genomic predictability of interconnected bi-parental maize populations. Genetics 194:493–503
    • (2013) Genetics , vol.194 , pp. 493-503
    • Riedelsheimer, C.1    Endelman, J.B.2    Stange, M.3
  • 40
    • 2942532615 scopus 로고    scopus 로고
    • Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits
    • Schön C-C, Utz H, Groh S et al (2004) Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics 498:485–498
    • (2004) Genetics , vol.498 , pp. 485-498
    • Schön, C.-C.1    Utz, H.2    Groh, S.3
  • 41
    • 0001557032 scopus 로고
    • Covariance between line per se and testcross performance
    • Smith O (1986) Covariance between line per se and testcross performance. Crop Sci 2:540–543
    • (1986) Crop Sci , vol.2 , pp. 540-543
    • Smith, O.1
  • 42
    • 84870241365 scopus 로고    scopus 로고
    • Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects
    • PID: 22733443
    • Technow F, Riedelsheimer C, Schrag T, Melchinger AE (2012) Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects. Theor Appl Genet 125:1181–1194
    • (2012) Theor Appl Genet , vol.125 , pp. 1181-1194
    • Technow, F.1    Riedelsheimer, C.2    Schrag, T.3    Melchinger, A.E.4
  • 43
    • 84883146893 scopus 로고    scopus 로고
    • Genomic prediction of northern corn leaf blight resistance in maize with combined or separated training sets for heterotic groups
    • PID: 23390596
    • Technow F, Bürger A, Melchinger AE (2013) Genomic prediction of northern corn leaf blight resistance in maize with combined or separated training sets for heterotic groups. G3 3:197–203
    • (2013) G3 , vol.3 , pp. 197-203
    • Technow, F.1    Bürger, A.2    Melchinger, A.E.3
  • 44
    • 84905641294 scopus 로고    scopus 로고
    • Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize
    • PID: 24850820
    • Technow F, Schrag T, Schipprack W et al (2014) Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize. Genetics. doi:10.1534/genetics.114.165860
    • (2014) Genetics
    • Technow, F.1    Schrag, T.2    Schipprack, W.3
  • 47
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • COI: 1:CAS:528:DC%2BD1cXhtlajtLzO, PID: 18946147
    • VanRaden PM (2008) Efficient methods to compute genomic predictions. J Dairy Sci 91:4414–4423
    • (2008) J Dairy Sci , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 48
    • 84883177912 scopus 로고    scopus 로고
    • Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments
    • PID: 23173094
    • Windhausen VS, Atlin GN, Hickey JM et al (2012) Effectiveness of genomic prediction of maize hybrid performance in different breeding populations and environments. G3 2:1427–1436
    • (2012) G3 , vol.2 , pp. 1427-1436
    • Windhausen, V.S.1    Atlin, G.N.2    Hickey, J.M.3
  • 49
    • 84879324656 scopus 로고    scopus 로고
    • Pitfalls of predicting complex traits from SNPs
    • COI: 1:CAS:528:DC%2BC3sXpsV2mu70%3D, PID: 23774735
    • Wray NR, Yang J, Hayes BJ et al (2013) Pitfalls of predicting complex traits from SNPs. Nat Rev Genet 14:507–515
    • (2013) Nat Rev Genet , vol.14 , pp. 507-515
    • Wray, N.R.1    Yang, J.2    Hayes, B.J.3
  • 50
    • 84861792509 scopus 로고    scopus 로고
    • Accuracy of genomic selection in European maize elite breeding populations
    • PID: 22075809
    • Zhao Y, Gowda M, Liu W et al (2012) Accuracy of genomic selection in European maize elite breeding populations. Theor Appl Genet 124:769–776
    • (2012) Theor Appl Genet , vol.124 , pp. 769-776
    • Zhao, Y.1    Gowda, M.2    Liu, W.3


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