Diversity and distribution of fungal communities in the marine sediments of Kongsfjorden, Svalbard (High Arctic)

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Zhang, Tao ^a   Wang, Neng Fei ^b   Zhang, Yu Qin ^a   Liu, Hong Yu ^a   Yu, Li Yan ^a  

^a INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^b FIRST INSTITUTE OF OCEANOGRAPHY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

SEA WATER;

ARCTIC; CLASSIFICATION; FUNGUS; ISOLATION AND PURIFICATION; MICROBIOLOGY; SEDIMENT; SPECIES DIFFERENCE;

ARCTIC REGIONS; FUNGI; GEOLOGIC SEDIMENTS; SEAWATER; SPECIES SPECIFICITY;

EID: 84945273881     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep14524     Document Type: Article

References (48)

1. Grebmeier, J. M. et al. A major ecosystem shift in the northern Bering Sea. Science 311, 1461-1464 (2006).
2. Post, E. et al. Ecological dynamics across the arctic associated with recent climate change. Science 325, 1355-1358 (2009).
3. Vincent, W. F. Microbial ecosystem responses to rapid climate change in the Arctic. ISME J. 4, 1089-1091 (2010).
4. Kohlmeyer, J. & Kohlmeyer, E. Marine Mycology: The Higher Fungi. (Academic Press, London, 1979).
5. Damare, S., Singh, P. & Raghukumar, S. Biotechnology of Marine Fungi. In Biology of Marine Fungi. (ed. Raghukumar, C.) 278 (Springer-Verlag, Berlin Heidelberg, 2012).
6. Damare, S., Raghukumar, C. & Raghukumar, S. Fungi in deep-sea sediments of the Central Indian Basin. Deep-Sea Res. I. 53, 14-27 (2006).
7. Hyde, K. D. et al. Role of fungi in marine ecosystems. Biodivers. Conserv. 7, 1147-1161 (1998).
8. Cathrine, S. J. & Raghukumar, C. Anaerobic denitrification in fungi from the coastal marine sediments off Goa, India. Mycol. Res. 113, 100-109 (2009).
9. Jebaraj, C. S., Raghukumar, C., Behnke, A. & Stoeck, T. Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation. FEMS Microb. Ecol. 71, 399-412 (2010).
10. Gihring, T. M., Lavik, G., Kuypers, M. M. & Kostka, J. E. Direct determination of nitrogen cycling rates and pathways in Arctic fjord sediments (Svalbard, Norway). Limnol. Oceanogr. 55, 740-752 (2010).
11. Chen, Z. et al. Purification and characterization of a novel antifungal protein secreted by Penicillium chrysogenum from an Arctic sediment. Appl. Microbiol. Biot. 97, 10381-10390 (2013).
12. Singh, P., Raghukumar, C., Meena, R. M., Verma, P. & Shouche, Y. Fungal diversity in deep-sea sediments revealed by culturedependent and culture-independent approaches. Fungal Ecol. 5, 543-553 (2012).
13. Raghukumar, C. et al. Buried in time: culturable fungi in a deep-sea sediment core from the Chagos Trench, Indian Ocean. Deep-Sea Res. Part I. 51, 1759-1768 (2004).
14. Singh, P., Raghukumar, C., Verma, P. & Shouche, Y. Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics. Fungal Divers. 40, 89-102 (2010).
15. Mouton, M., Postma, F., Wilsenach, J. & Botha, A. Diversity and characterization of culturable fungi from marine sediment collected from St. Helena Bay, South Africa. Microb. Ecol. 64, 311-319 (2012).
16. Zhang, X. Y., Zhang, Y., Xu, X. Y. & Qi, S. H. Diverse deep-sea fungi from the South China Sea and their antimicrobial activity. Curr. Microbiol. 67, 525-530 (2013).
17. Soumya et al. Filamentous fungal isolates from the continental shelf and slope sediments of Arabian Sea. Int. J. Res. Mar. Sci. 2, 26-32 (2013).
18. Samuel, P., Prince, L. & Prabakaran, P. Assessment of mycological diversity of marine sediment of south east coast of Tamilnadu, India. Euro. J. Exp. Bio. 1, 130-138 (2011).
19. Khudyakova, Y. V., Pivkin, M. V., Kuzetsova, T. A. & Svetashev, V. I. Fungi in sediments of the sea of Japan and their biologically active metabolites. Microbiology 69, 608-611 (2000).
20. Zhang, X. Y., Tang, G. L., Xu, X. Y., Nong, X. H. & Qi, S. H. Insights into deep-Sea sediment fungal communities from the East Indian Ocean using targeted environmental sequencing combined with traditional cultivation. PLoS ONE 9, e109118 (2014).
21. Singh, P., Raghukumar, C., Verma, P. & Shouche, Y. Fungal community analysis in the deep-sea sediments of the Central Indian Basin by culture-independent approach. Microb. Ecol. 61, 507-517 (2011).
22. Singh, P., Raghukumar, C., Verma, P. & Shouche, Y. Assessment of fungal diversity in deep-sea sediments by multiple primer approach. World J. Microbiol. Biotechnol. 28, 659-667 (2012).
23. Xu, W., Pang, K. L. & Luo, Z. H. High fungal diversity and abundance recovered in the deep-sea sediments of the Pacific Ocean. Microb. Ecol. 68, 688-698 (2014).
24. Rédou, V. et al. In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths. FEMS Microb. Ecol. 90, 908-921 (2014).
25. Nagano, Y. et al. Fungal diversity in deep-sea sediments - the presence of novel fungal groups. Fungal Ecol. 3, 316-325 (2010).
26. Lai, X. et al. Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea. ISME J. 1, 756-762 (2007).
27. Spielhagen, R. F. et al. Enhanced modern heat transfer to the Arctic by warm Atlantic Water. Science 331, 450-453 (2011).
28. Piquet, M. T., Scheepen, J. F., Bolhuis, H., Wiencke, C. & Buma, A. G. J. Variability of protistan and bacterial communities in two Arctic fjords (Spitsbergen). Polar Biol. 33, 1521-1536 (2010).
29. Hop, H. et al. The marine ecosystem of Kongsfjorden, Svalbard. Polar Res. 21, 167-208 (2002).
30. Bass, D. et al. Yeast forms dominate fungal diversity in the deep oceans. Proc. R. Soc. B. 274, 3069-3077 (2007).
31. Le Calvez, T., Burgaud, G., Mahé, S., Barbier, G. & Vandenkoornhuyse, P. Fungal diversity in deep-sea hydrothermal ecosystems. Appl. Environ. Microbiol. 75, 6415-6421 (2009).
32. Botnen, S. et al. Low host specificity of root-associated fungi at an Arctic site. Mol. Ecol. 23, 975-985 (2014).
33. Bjorbækmo, M. F. et al. High diversity of root associated fungi in both alpine and arctic Dryas octopetala. BMC Plant Biol. 10, 244 (2010).
34. Margesin, R. & Buzzini, P. Cold-Adapted Yeast: Biodiversity, Adaptation Strategies and Biotechnological Significance. (Springer-Verlag, Berlin Heidelberg, 2014).
35. Pawar, V. H. & Thirumalachar, M. J. Studies on halophilic soil fungi from Bombay. Nova Hedwigia 12, 497-508 (1966).
36. Maggi, O. et al. Adaptation of fungi, including yeasts, to cold environments. Plant Biosyst. 147, 247-258 (2013).
37. Liu, X. D. et al. Abiotic stress resistance, a novel moonlighting function of ribosomal protein RPL44 in the halophilic fungus Aspergillus glaucus. Appl. Environ. Microb. 80, 4294-4300 (2014).
38. Khoa, L. V. & Hatai, K. First case of Fusarium oxysporum infection in culture kuruma prawn, Penaeus japonicus in Japan. Fish Pathol. 40, 195-196 (2005).
39. Khoa, L. V., Hatai, K., Yuasa, A., & Sawada, K. Morphology and molecular phylogeny of Fusarium solani isolated from kuruma prawn Penaeus japonicus with black gills. Fish Pathol. 40, 103-109 (2005).
40. Włodarska-Kowalczuk, M. & Pearson, T. H. Soft-bottom macrobenthic faunal associations and factors affecting species distribution in an Arctic glacial fjord (Kongsfjord, Spitsbergen). Polar Biol. 27, 155-167 (2004).
41. Svendsen, H. et al. The physical environment of Kongsfjorden-Krossfjorden, an Arctic fjord system in Svalbard. Polar Res. 21, 133-166 (2002).
42. Włodarska-Kowalczuk, M., Pearson, T. H. & Kendall, M. A. Benthic response to chronic natural physical disturbance by glacial sedimentation in an Arctic fjord. Mar. Ecol. Prog. Ser. 303, 31-41 (2005).
43. Lefauconnier, B., Hagen, J. O. & Rudant, J. P. Flow speed and calving rate of Kongsbreen glacier, 70°N Spitsbergen, Svalbard, using SPOT images. Polar Res. 13, 59-66 (1994).
44. White, T. J., Bruns, T. D., Lee, S. & Taylor, J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols: a guide to methods and applications: (eds Innis, M. A. et al.) 315-322 (Academic Press, London, 1990).
45. Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
46. Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996-998 (2013).
47. Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200 (2011).
48. Bastian, M., Heymann, S. & Jacomy, M. Gephi, an open source software for exploring and manipulating networks. Third International AAAI Conference on Weblogs and Social Media: San Jose, California. Palo Alto: AAAI Press. (2009, May 17).