메뉴 건너뛰기




Volumn 28, Issue 2, 2012, Pages 659-667

Assessment of fungal diversity in deep-sea sediments by multiple primer approach

Author keywords

18S rRNA gene; Central Indian Basin; Deep sea sediments; ITS primers; Uncultured fungi

Indexed keywords

18S RDNA; 18S RRNA; CENTRAL INDIAN BASIN; CUT-OFF; DEEP SEA SEDIMENT; FUNGAL DIVERSITY; FUNGAL GENERA; HYPERSALINE; INTERNAL TRANSCRIBED SPACERS; ITS PRIMERS; OPERATIONAL TAXONOMIC UNITS; PHYLOGENETIC AFFILIATION; PRIMER SETS; SAMPLING SITE; SPECIFIC PRIMERS;

EID: 84856442168     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-011-0859-3     Document Type: Article
Times cited : (54)

References (43)
  • 1
    • 0037224886 scopus 로고    scopus 로고
    • Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil
    • Anderson IC, Campbell CD, Prosser JI (2003) Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 5: 36-47.
    • (2003) Environ Microbiol , vol.5 , pp. 36-47
    • Anderson, I.C.1    Campbell, C.D.2    Prosser, J.I.3
  • 3
    • 84995007555 scopus 로고
    • The colacosomes: new structures at the host-parasite interface of a mycoparasitic basidiomycete
    • Bauer R, Oberwinkler F (1991) The colacosomes: new structures at the host-parasite interface of a mycoparasitic basidiomycete. Bot Acta 104: 53-57.
    • (1991) Bot Acta , vol.104 , pp. 53-57
    • Bauer, R.1    Oberwinkler, F.2
  • 4
    • 34247632944 scopus 로고    scopus 로고
    • Phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data
    • Begerow D, Stoll M, Bauer RA (2006) Phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data. Mycologia 98: 906-916.
    • (2006) Mycologia , vol.98 , pp. 906-916
    • Begerow, D.1    Stoll, M.2    Bauer, R.A.3
  • 5
    • 0033771173 scopus 로고    scopus 로고
    • PCR primers that amplify fungal rRNA genes from environmental samples
    • Borneman J, Hartin RJ (2000) PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 66: 4356-4360.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4356-4360
    • Borneman, J.1    Hartin, R.J.2
  • 7
    • 71149114917 scopus 로고    scopus 로고
    • Fungal diversity associated with an active deep-sea volcano: Vailulu'u Seamount, Samoa
    • Connell L, Barrett A, Templeton A, Staudigel H (2009) Fungal diversity associated with an active deep-sea volcano: Vailulu'u Seamount, Samoa. Geomicrobiol J 26: 597-605.
    • (2009) Geomicrobiol J , vol.26 , pp. 597-605
    • Connell, L.1    Barrett, A.2    Templeton, A.3    Staudigel, H.4
  • 8
    • 30144440085 scopus 로고    scopus 로고
    • Fungi in deep-sea sediments of the Central Indian Basin
    • Damare S, Raghukumar C, Raghukumar S (2006) Fungi in deep-sea sediments of the Central Indian Basin. Deep-Sea Res PT-1 53: 14-27.
    • (2006) Deep-Sea Res PT-1 , vol.53 , pp. 14-27
    • Damare, S.1    Raghukumar, C.2    Raghukumar, S.3
  • 9
    • 0035527414 scopus 로고    scopus 로고
    • Environmental diversity of bacteria and archaea
    • DeLong EF, Pace NR (2001) Environmental diversity of bacteria and archaea. Syst Biol 50: 470-478.
    • (2001) Syst Biol , vol.50 , pp. 470-478
    • Delong, E.F.1    Pace, N.R.2
  • 11
    • 54449086625 scopus 로고    scopus 로고
    • Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata
    • Gao Z, Li B, Zheng C, Wang G (2008) Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata. Appl Environ Microbiol 74: 6091-6101.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6091-6101
    • Gao, Z.1    Li, B.2    Zheng, C.3    Wang, G.4
  • 12
    • 73449105727 scopus 로고    scopus 로고
    • Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters
    • Gao Z, Johnson ZI, Wang G (2010) Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters. ISME J 4: 111-120.
    • (2010) ISME J , vol.4 , pp. 111-120
    • Gao, Z.1    Johnson, Z.I.2    Wang, G.3
  • 13
    • 40749107421 scopus 로고    scopus 로고
    • Bacterial diversity in deep-sea sediment from north eastern Pacific Ocean
    • Hongxiang X, Min W, Xiaogu W, Junyi Y, Chunsheng W (2008) Bacterial diversity in deep-sea sediment from north eastern Pacific Ocean. Acta Ecol Sinica 28: 479-485.
    • (2008) Acta Ecol Sinica , vol.28 , pp. 479-485
    • Hongxiang, X.1    Min, W.2    Xiaogu, W.3    Junyi, Y.4    Chunsheng, W.5
  • 14
    • 76049118198 scopus 로고    scopus 로고
    • Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation
    • Jebaraj CS, Raghukumar C, Behnke A, Stoeck T (2010) Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation. FEMS Microbiol Ecol 71: 99-412.
    • (2010) FEMS Microbiol Ecol , vol.71 , pp. 99-412
    • Jebaraj, C.S.1    Raghukumar, C.2    Behnke, A.3    Stoeck, T.4
  • 15
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306.
    • (2008) Brief Bioinform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 16
    • 76149138878 scopus 로고    scopus 로고
    • Morphological response of the halophilic fungal genus Wallemia to high salinity
    • Kunčič MK, Kogej T, Drobne D, Gunde-Cimerman N (2010) Morphological response of the halophilic fungal genus Wallemia to high salinity. Appl Environ Microbiol 76: 329-337.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 329-337
    • Kunčič, M.K.1    Kogej, T.2    Drobne, D.3    Gunde-Cimerman, N.4
  • 17
    • 36849048226 scopus 로고    scopus 로고
    • Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea
    • Lai X, Cao L, Tan H, Fang S, Huang Y, Zhou S (2007) Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea. ISME J 1: 756-762.
    • (2007) ISME J , vol.1 , pp. 756-762
    • Lai, X.1    Cao, L.2    Tan, H.3    Fang, S.4    Huang, Y.5    Zhou, S.6
  • 18
    • 0032990367 scopus 로고    scopus 로고
    • Bacterial diversity in deep-sea sediments from different depths
    • Li L, Kato C, Horikoshi K (1999) Bacterial diversity in deep-sea sediments from different depths. Biodivers Conserv 8: 659-677.
    • (1999) Biodivers Conserv , vol.8 , pp. 659-677
    • Li, L.1    Kato, C.2    Horikoshi, K.3
  • 19
    • 77956521904 scopus 로고    scopus 로고
    • Phylogenetic diversity of culturable fungi associated with two marine sponges: Haliclona simulans and Gelliodes carnosa, collected from the Hainan Island coastal waters of the South China Sea
    • Liu WC, Li CQ, Zhu P, Yang JL, Cheng KD (2010) Phylogenetic diversity of culturable fungi associated with two marine sponges: Haliclona simulans and Gelliodes carnosa, collected from the Hainan Island coastal waters of the South China Sea. Fungal Divers 42: 1-15.
    • (2010) Fungal Divers , vol.42 , pp. 1-15
    • Liu, W.C.1    Li, C.Q.2    Zhu, P.3    Yang, J.L.4    Cheng, K.D.5
  • 20
  • 21
    • 0037457969 scopus 로고    scopus 로고
    • Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the mid-Atlantic Ridge
    • López-García P, Philippe H, Gail F, Moreira D (2003) Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the mid-Atlantic Ridge. Proc Natl Acad Sci USA 2: 697-702.
    • (2003) Proc Natl Acad Sci USA , vol.2 , pp. 697-702
    • López-García, P.1    Philippe, H.2    Gail, F.3    Moreira, D.4
  • 22
    • 33846064724 scopus 로고    scopus 로고
    • Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field
    • López-García P, Vereshchaka A, Moreira D (2007) Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field. Environ Microbiol 9: 546-554.
    • (2007) Environ Microbiol , vol.9 , pp. 546-554
    • López-García, P.1    Vereshchaka, A.2    Moreira, D.3
  • 23
    • 68849094913 scopus 로고    scopus 로고
    • Archaeal diversity in deep-sea sediments estimated by means of different terminal-restriction fragment length polymorphisms (T-RFLP) Protocols
    • Luna GM, Stumm K, Pusceddu A, Danovaro R (2009) Archaeal diversity in deep-sea sediments estimated by means of different terminal-restriction fragment length polymorphisms (T-RFLP) Protocols. Curr Microbiol 59: 356-361.
    • (2009) Curr Microbiol , vol.59 , pp. 356-361
    • Luna, G.M.1    Stumm, K.2    Pusceddu, A.3    Danovaro, R.4
  • 25
    • 0024485797 scopus 로고
    • Geochemical evidence of terrigenous influence in deep-sea sediments up to 8°S in the in the Central Indian Basin
    • Nath BN, Rao VP, Becker KP (1989) Geochemical evidence of terrigenous influence in deep-sea sediments up to 8°S in the Central Indian Basin. Marine Geol 87: 301-313.
    • (1989) Marine Geol , vol.87 , pp. 301-313
    • Nath, B.N.1    Rao, V.P.2    Becker, K.P.3
  • 27
    • 5644243318 scopus 로고    scopus 로고
    • Buried in time: culturable fungi in a deep-sea sediment core from the Chagos Trench, Indian Ocean
    • Raghukumar C, Raghukumar S, Sheelu G, Gupta SM, Nath BN, Rao BR (2004) Buried in time: culturable fungi in a deep-sea sediment core from the Chagos Trench, Indian Ocean. Deep-Sea Res PT-1 51: 1759-1768.
    • (2004) Deep-Sea Res PT-1 , vol.51 , pp. 1759-1768
    • Raghukumar, C.1    Raghukumar, S.2    Sheelu, G.3    Gupta, S.M.4    Nath, B.N.5    Rao, B.R.6
  • 30
    • 78649902508 scopus 로고    scopus 로고
    • Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics
    • Singh P, Raghukumar C, Verma P, Shouche Y (2010) Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics. Fungal Divers 40: 89-102.
    • (2010) Fungal Divers , vol.40 , pp. 89-102
    • Singh, P.1    Raghukumar, C.2    Verma, P.3    Shouche, Y.4
  • 31
    • 79953739390 scopus 로고    scopus 로고
    • Fungal community analysis in the deep-sea sediments of the Central Indian Basin by culture-independent approach
    • Singh P, Raghukumar C, Verma P, Shouche Y (2011) Fungal community analysis in the deep-sea sediments of the Central Indian Basin by culture-independent approach. Microb Ecol 61: 507-517.
    • (2011) Microb Ecol , vol.61 , pp. 507-517
    • Singh, P.1    Raghukumar, C.2    Verma, P.3    Shouche, Y.4
  • 34
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt E, Liesack W, Goebel BM (1993) Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. J FASEB 7: 232-236.
    • (1993) J FASEB , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 35
    • 0038221066 scopus 로고    scopus 로고
    • Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen depleted marine environments
    • Stoeck T, Epstein S (2003) Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen depleted marine environments. Appl Environ Microbiol 69: 2657-2663.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2657-2663
    • Stoeck, T.1    Epstein, S.2
  • 36
    • 0141704503 scopus 로고    scopus 로고
    • Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea)
    • Stoeck T, Taylor GT, Epstein SS (2003) Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea). Appl Environ Microbiol 69: 5656-5663.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5656-5663
    • Stoeck, T.1    Taylor, G.T.2    Epstein, S.S.3
  • 37
    • 32344437178 scopus 로고    scopus 로고
    • A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
    • Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist 157: 31-43.
    • (2006) Protist , vol.157 , pp. 31-43
    • Stoeck, T.1    Hayward, B.2    Taylor, G.T.3    Varela, R.4    Epstein, S.S.5
  • 38
    • 0344035670 scopus 로고    scopus 로고
    • Genetic diversity of Archaea in deep-sea hydrothermal vent environments
    • Takai K, Horikoshi K (1999) Genetic diversity of Archaea in deep-sea hydrothermal vent environments. Genetics 152: 1285-1297.
    • (1999) Genetics , vol.152 , pp. 1285-1297
    • Takai, K.1    Horikoshi, K.2
  • 39
    • 21744431833 scopus 로고    scopus 로고
    • Genetic diversity of microbial eukaryotes in anoxic sediment around fumaroles on a submarine caldera floor based on the small-subunit rDNA phylogeny
    • Takishita K, Miyake H, Kawato M, Maruyama T (2005) Genetic diversity of microbial eukaryotes in anoxic sediment around fumaroles on a submarine caldera floor based on the small-subunit rDNA phylogeny. Extremophiles 9: 185-196.
    • (2005) Extremophiles , vol.9 , pp. 185-196
    • Takishita, K.1    Miyake, H.2    Kawato, M.3    Maruyama, T.4
  • 40
    • 33646001384 scopus 로고    scopus 로고
    • Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep
    • Takishita K, Tsuchiya M, Reimer JD, Maruyama T (2006) Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep. Extremophiles 10: 165-169.
    • (2006) Extremophiles , vol.10 , pp. 165-169
    • Takishita, K.1    Tsuchiya, M.2    Reimer, J.D.3    Maruyama, T.4
  • 41
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 42
    • 0032696569 scopus 로고    scopus 로고
    • Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis
    • Urakawa H, Kita-Tsukamoto K, Ohwada K (1999) Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology 145: 3305-3315.
    • (1999) Microbiology , vol.145 , pp. 3305-3315
    • Urakawa, H.1    Kita-Tsukamoto, K.2    Ohwada, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.