-
1
-
-
0037224886
-
Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil
-
Anderson IC, Campbell CD, Prosser JI (2003) Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 5: 36-47.
-
(2003)
Environ Microbiol
, vol.5
, pp. 36-47
-
-
Anderson, I.C.1
Campbell, C.D.2
Prosser, J.I.3
-
2
-
-
36849017037
-
Yeast forms dominate fungal diversity in the deep oceans
-
Bass D, Howe A, Brown N, Barton H, Demidova M, Michelle H, Li L, Sander H, Watkinson SC, Willcock S, Richards TA (2007) Yeast forms dominate fungal diversity in the deep oceans. Proc R Soc B 274: 3069-3077.
-
(2007)
Proc R Soc B
, vol.274
, pp. 3069-3077
-
-
Bass, D.1
Howe, A.2
Brown, N.3
Barton, H.4
Demidova, M.5
Michelle, H.6
Li, L.7
Sander, H.8
Watkinson, S.C.9
Willcock, S.10
Richards, T.A.11
-
3
-
-
84995007555
-
The colacosomes: new structures at the host-parasite interface of a mycoparasitic basidiomycete
-
Bauer R, Oberwinkler F (1991) The colacosomes: new structures at the host-parasite interface of a mycoparasitic basidiomycete. Bot Acta 104: 53-57.
-
(1991)
Bot Acta
, vol.104
, pp. 53-57
-
-
Bauer, R.1
Oberwinkler, F.2
-
4
-
-
34247632944
-
Phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data
-
Begerow D, Stoll M, Bauer RA (2006) Phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data. Mycologia 98: 906-916.
-
(2006)
Mycologia
, vol.98
, pp. 906-916
-
-
Begerow, D.1
Stoll, M.2
Bauer, R.A.3
-
5
-
-
0033771173
-
PCR primers that amplify fungal rRNA genes from environmental samples
-
Borneman J, Hartin RJ (2000) PCR primers that amplify fungal rRNA genes from environmental samples. Appl Environ Microbiol 66: 4356-4360.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4356-4360
-
-
Borneman, J.1
Hartin, R.J.2
-
6
-
-
13444304367
-
The ribosomal database project (RDP-II): sequences and tools for high-throughput rRNA analysis
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM (2004) The ribosomal database project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33: D294-D296.
-
(2004)
Nucleic Acids Res
, vol.33
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
7
-
-
71149114917
-
Fungal diversity associated with an active deep-sea volcano: Vailulu'u Seamount, Samoa
-
Connell L, Barrett A, Templeton A, Staudigel H (2009) Fungal diversity associated with an active deep-sea volcano: Vailulu'u Seamount, Samoa. Geomicrobiol J 26: 597-605.
-
(2009)
Geomicrobiol J
, vol.26
, pp. 597-605
-
-
Connell, L.1
Barrett, A.2
Templeton, A.3
Staudigel, H.4
-
9
-
-
0035527414
-
Environmental diversity of bacteria and archaea
-
DeLong EF, Pace NR (2001) Environmental diversity of bacteria and archaea. Syst Biol 50: 470-478.
-
(2001)
Syst Biol
, vol.50
, pp. 470-478
-
-
Delong, E.F.1
Pace, N.R.2
-
10
-
-
78650764281
-
Marine subsurface eukaryotes: the fungal majority
-
Edgcomb VP, Beaudoin D, Gast R, Biddle JF, Teske A (2011) Marine subsurface eukaryotes: the fungal majority. Environ Microbiol 13: 172-183.
-
(2011)
Environ Microbiol
, vol.13
, pp. 172-183
-
-
Edgcomb, V.P.1
Beaudoin, D.2
Gast, R.3
Biddle, J.F.4
Teske, A.5
-
11
-
-
54449086625
-
Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata
-
Gao Z, Li B, Zheng C, Wang G (2008) Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata. Appl Environ Microbiol 74: 6091-6101.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 6091-6101
-
-
Gao, Z.1
Li, B.2
Zheng, C.3
Wang, G.4
-
12
-
-
73449105727
-
Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters
-
Gao Z, Johnson ZI, Wang G (2010) Molecular characterization of the spatial diversity and novel lineages of mycoplankton in Hawaiian coastal waters. ISME J 4: 111-120.
-
(2010)
ISME J
, vol.4
, pp. 111-120
-
-
Gao, Z.1
Johnson, Z.I.2
Wang, G.3
-
13
-
-
40749107421
-
Bacterial diversity in deep-sea sediment from north eastern Pacific Ocean
-
Hongxiang X, Min W, Xiaogu W, Junyi Y, Chunsheng W (2008) Bacterial diversity in deep-sea sediment from north eastern Pacific Ocean. Acta Ecol Sinica 28: 479-485.
-
(2008)
Acta Ecol Sinica
, vol.28
, pp. 479-485
-
-
Hongxiang, X.1
Min, W.2
Xiaogu, W.3
Junyi, Y.4
Chunsheng, W.5
-
14
-
-
76049118198
-
Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation
-
Jebaraj CS, Raghukumar C, Behnke A, Stoeck T (2010) Fungal diversity in oxygen-depleted regions of the Arabian Sea revealed by targeted environmental sequencing combined with cultivation. FEMS Microbiol Ecol 71: 99-412.
-
(2010)
FEMS Microbiol Ecol
, vol.71
, pp. 99-412
-
-
Jebaraj, C.S.1
Raghukumar, C.2
Behnke, A.3
Stoeck, T.4
-
15
-
-
45949109669
-
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
-
Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306.
-
(2008)
Brief Bioinform
, vol.9
, pp. 299-306
-
-
Kumar, S.1
Nei, M.2
Dudley, J.3
Tamura, K.4
-
17
-
-
36849048226
-
Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea
-
Lai X, Cao L, Tan H, Fang S, Huang Y, Zhou S (2007) Fungal communities from methane hydrate-bearing deep-sea marine sediments in South China Sea. ISME J 1: 756-762.
-
(2007)
ISME J
, vol.1
, pp. 756-762
-
-
Lai, X.1
Cao, L.2
Tan, H.3
Fang, S.4
Huang, Y.5
Zhou, S.6
-
18
-
-
0032990367
-
Bacterial diversity in deep-sea sediments from different depths
-
Li L, Kato C, Horikoshi K (1999) Bacterial diversity in deep-sea sediments from different depths. Biodivers Conserv 8: 659-677.
-
(1999)
Biodivers Conserv
, vol.8
, pp. 659-677
-
-
Li, L.1
Kato, C.2
Horikoshi, K.3
-
19
-
-
77956521904
-
Phylogenetic diversity of culturable fungi associated with two marine sponges: Haliclona simulans and Gelliodes carnosa, collected from the Hainan Island coastal waters of the South China Sea
-
Liu WC, Li CQ, Zhu P, Yang JL, Cheng KD (2010) Phylogenetic diversity of culturable fungi associated with two marine sponges: Haliclona simulans and Gelliodes carnosa, collected from the Hainan Island coastal waters of the South China Sea. Fungal Divers 42: 1-15.
-
(2010)
Fungal Divers
, vol.42
, pp. 1-15
-
-
Liu, W.C.1
Li, C.Q.2
Zhu, P.3
Yang, J.L.4
Cheng, K.D.5
-
21
-
-
0037457969
-
Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the mid-Atlantic Ridge
-
López-García P, Philippe H, Gail F, Moreira D (2003) Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the mid-Atlantic Ridge. Proc Natl Acad Sci USA 2: 697-702.
-
(2003)
Proc Natl Acad Sci USA
, vol.2
, pp. 697-702
-
-
López-García, P.1
Philippe, H.2
Gail, F.3
Moreira, D.4
-
22
-
-
33846064724
-
Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field
-
López-García P, Vereshchaka A, Moreira D (2007) Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field. Environ Microbiol 9: 546-554.
-
(2007)
Environ Microbiol
, vol.9
, pp. 546-554
-
-
López-García, P.1
Vereshchaka, A.2
Moreira, D.3
-
23
-
-
68849094913
-
Archaeal diversity in deep-sea sediments estimated by means of different terminal-restriction fragment length polymorphisms (T-RFLP) Protocols
-
Luna GM, Stumm K, Pusceddu A, Danovaro R (2009) Archaeal diversity in deep-sea sediments estimated by means of different terminal-restriction fragment length polymorphisms (T-RFLP) Protocols. Curr Microbiol 59: 356-361.
-
(2009)
Curr Microbiol
, vol.59
, pp. 356-361
-
-
Luna, G.M.1
Stumm, K.2
Pusceddu, A.3
Danovaro, R.4
-
24
-
-
77956909583
-
Fungal diversity in deep-sea sediments-the presence of novel fungal groups
-
Nagano Y, Nagahama T, Hatada Y, Nunoura T, Takami H, Miyazaki J, Takai K, Horikoshi K (2010) Fungal diversity in deep-sea sediments-the presence of novel fungal groups. Fungal Ecol 3: 316-325.
-
(2010)
Fungal Ecol
, vol.3
, pp. 316-325
-
-
Nagano, Y.1
Nagahama, T.2
Hatada, Y.3
Nunoura, T.4
Takami, H.5
Miyazaki, J.6
Takai, K.7
Horikoshi, K.8
-
25
-
-
0024485797
-
Geochemical evidence of terrigenous influence in deep-sea sediments up to 8°S in the in the Central Indian Basin
-
Nath BN, Rao VP, Becker KP (1989) Geochemical evidence of terrigenous influence in deep-sea sediments up to 8°S in the Central Indian Basin. Marine Geol 87: 301-313.
-
(1989)
Marine Geol
, vol.87
, pp. 301-313
-
-
Nath, B.N.1
Rao, V.P.2
Becker, K.P.3
-
26
-
-
25144516095
-
Fungal community analysis by large-scale sequencing of environmental samples
-
O'Brien H, Parrent JL, Jackson JA, Moncalvo J, Vilgalys R (2005) Fungal community analysis by large-scale sequencing of environmental samples. Appl Environ Microbiol 71: 5544-5550.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5544-5550
-
-
O'Brien, H.1
Parrent, J.L.2
Jackson, J.A.3
Moncalvo, J.4
Vilgalys, R.5
-
27
-
-
5644243318
-
Buried in time: culturable fungi in a deep-sea sediment core from the Chagos Trench, Indian Ocean
-
Raghukumar C, Raghukumar S, Sheelu G, Gupta SM, Nath BN, Rao BR (2004) Buried in time: culturable fungi in a deep-sea sediment core from the Chagos Trench, Indian Ocean. Deep-Sea Res PT-1 51: 1759-1768.
-
(2004)
Deep-Sea Res PT-1
, vol.51
, pp. 1759-1768
-
-
Raghukumar, C.1
Raghukumar, S.2
Sheelu, G.3
Gupta, S.M.4
Nath, B.N.5
Rao, B.R.6
-
28
-
-
72949107142
-
Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres W, Thallinger GG, Horn DJV, Weber CF (2009) Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, W.12
Thallinger, G.G.13
Horn, D.J.V.14
Weber, C.F.15
-
30
-
-
78649902508
-
Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics
-
Singh P, Raghukumar C, Verma P, Shouche Y (2010) Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics. Fungal Divers 40: 89-102.
-
(2010)
Fungal Divers
, vol.40
, pp. 89-102
-
-
Singh, P.1
Raghukumar, C.2
Verma, P.3
Shouche, Y.4
-
31
-
-
79953739390
-
Fungal community analysis in the deep-sea sediments of the Central Indian Basin by culture-independent approach
-
Singh P, Raghukumar C, Verma P, Shouche Y (2011) Fungal community analysis in the deep-sea sediments of the Central Indian Basin by culture-independent approach. Microb Ecol 61: 507-517.
-
(2011)
Microb Ecol
, vol.61
, pp. 507-517
-
-
Singh, P.1
Raghukumar, C.2
Verma, P.3
Shouche, Y.4
-
32
-
-
0031474294
-
The importance of marine sediment biodiversity in ecosystem processes
-
Snelgrove PVR, Blackburn TH, Hutchings P, Alongi D, Grassle JF, Hummel H, King G, Koike I, Lambshead PJD, Ramsing NB, Solis-Weiss V, Freckman DW (1997) The importance of marine sediment biodiversity in ecosystem processes. Ambio 26: 578-582.
-
(1997)
Ambio
, vol.26
, pp. 578-582
-
-
Snelgrove, P.V.R.1
Blackburn, T.H.2
Hutchings, P.3
Alongi, D.4
Grassle, J.F.5
Hummel, H.6
King, G.7
Koike, I.8
Lambshead, P.J.D.9
Ramsing, N.B.10
Solis-Weiss, V.11
Freckman, D.W.12
-
33
-
-
33747073504
-
Microbial diversity in the deep sea and underexplored "rare biosphere"
-
Sogin M, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM, Herndl GJ (2006) Microbial diversity in the deep sea and underexplored "rare biosphere". Proc Natl Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
34
-
-
0027441283
-
Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
-
Stackebrandt E, Liesack W, Goebel BM (1993) Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. J FASEB 7: 232-236.
-
(1993)
J FASEB
, vol.7
, pp. 232-236
-
-
Stackebrandt, E.1
Liesack, W.2
Goebel, B.M.3
-
35
-
-
0038221066
-
Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen depleted marine environments
-
Stoeck T, Epstein S (2003) Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen depleted marine environments. Appl Environ Microbiol 69: 2657-2663.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2657-2663
-
-
Stoeck, T.1
Epstein, S.2
-
36
-
-
0141704503
-
Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea)
-
Stoeck T, Taylor GT, Epstein SS (2003) Novel eukaryotes from the permanently anoxic Cariaco Basin (Caribbean Sea). Appl Environ Microbiol 69: 5656-5663.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5656-5663
-
-
Stoeck, T.1
Taylor, G.T.2
Epstein, S.S.3
-
37
-
-
32344437178
-
A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples
-
Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist 157: 31-43.
-
(2006)
Protist
, vol.157
, pp. 31-43
-
-
Stoeck, T.1
Hayward, B.2
Taylor, G.T.3
Varela, R.4
Epstein, S.S.5
-
38
-
-
0344035670
-
Genetic diversity of Archaea in deep-sea hydrothermal vent environments
-
Takai K, Horikoshi K (1999) Genetic diversity of Archaea in deep-sea hydrothermal vent environments. Genetics 152: 1285-1297.
-
(1999)
Genetics
, vol.152
, pp. 1285-1297
-
-
Takai, K.1
Horikoshi, K.2
-
39
-
-
21744431833
-
Genetic diversity of microbial eukaryotes in anoxic sediment around fumaroles on a submarine caldera floor based on the small-subunit rDNA phylogeny
-
Takishita K, Miyake H, Kawato M, Maruyama T (2005) Genetic diversity of microbial eukaryotes in anoxic sediment around fumaroles on a submarine caldera floor based on the small-subunit rDNA phylogeny. Extremophiles 9: 185-196.
-
(2005)
Extremophiles
, vol.9
, pp. 185-196
-
-
Takishita, K.1
Miyake, H.2
Kawato, M.3
Maruyama, T.4
-
40
-
-
33646001384
-
Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep
-
Takishita K, Tsuchiya M, Reimer JD, Maruyama T (2006) Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep. Extremophiles 10: 165-169.
-
(2006)
Extremophiles
, vol.10
, pp. 165-169
-
-
Takishita, K.1
Tsuchiya, M.2
Reimer, J.D.3
Maruyama, T.4
-
41
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
42
-
-
0032696569
-
Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis
-
Urakawa H, Kita-Tsukamoto K, Ohwada K (1999) Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology 145: 3305-3315.
-
(1999)
Microbiology
, vol.145
, pp. 3305-3315
-
-
Urakawa, H.1
Kita-Tsukamoto, K.2
Ohwada, K.3
|