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Volumn 35, Issue 1, 2015, Pages 107-119

Shared Enhancer Activity in the Limbs and Phallus and Functional Divergence of a Limb-Genital cis-Regulatory Element in Snakes

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; CIS REGULATORY ELEMENT; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR TBX4; UNCLASSIFIED DRUG; T BOX TRANSCRIPTION FACTOR; TBX4 PROTEIN, MOUSE;

EID: 84945255277     PISSN: 15345807     EISSN: 18781551     Source Type: Journal    
DOI: 10.1016/j.devcel.2015.09.003     Document Type: Article
Times cited : (60)

References (52)
  • 4
    • 79954996838 scopus 로고    scopus 로고
    • Development of the external genitalia: conserved and divergent mechanisms of appendage patterning
    • Cohn M.J. Development of the external genitalia: conserved and divergent mechanisms of appendage patterning. Dev. Dyn. 2011, 240:1108-1115.
    • (2011) Dev. Dyn. , vol.240 , pp. 1108-1115
    • Cohn, M.J.1
  • 5
    • 0033519674 scopus 로고    scopus 로고
    • Developmental basis of limblessness and axial patterning in snakes
    • Cohn M.J., Tickle C. Developmental basis of limblessness and axial patterning in snakes. Nature 1999, 399:474-479.
    • (1999) Nature , vol.399 , pp. 474-479
    • Cohn, M.J.1    Tickle, C.2
  • 6
    • 84861911346 scopus 로고    scopus 로고
    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
    • Cotney J., Leng J., Oh S., DeMare L.E., Reilly S.K., Gerstein M.B., Noonan J.P. Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. Genome Res. 2012, 22:1069-1080.
    • (2012) Genome Res. , vol.22 , pp. 1069-1080
    • Cotney, J.1    Leng, J.2    Oh, S.3    DeMare, L.E.4    Reilly, S.K.5    Gerstein, M.B.6    Noonan, J.P.7
  • 9
    • 84867345057 scopus 로고    scopus 로고
    • CHANCE: comprehensive software for quality control and validation of ChIP-seq data
    • Diaz A., Nellore A., Song J.S. CHANCE: comprehensive software for quality control and validation of ChIP-seq data. Genome Biol. 2012, 13:R98.
    • (2012) Genome Biol. , vol.13 , pp. R98
    • Diaz, A.1    Nellore, A.2    Song, J.S.3
  • 10
    • 0031906441 scopus 로고    scopus 로고
    • An extensive 3' regulatory region controls expression of Bmp5 in specific anatomical structures of the mouse embryo
    • DiLeone R.J., Russell L.B., Kingsley D.M. An extensive 3' regulatory region controls expression of Bmp5 in specific anatomical structures of the mouse embryo. Genetics 1998, 148:401-408.
    • (1998) Genetics , vol.148 , pp. 401-408
    • DiLeone, R.J.1    Russell, L.B.2    Kingsley, D.M.3
  • 11
    • 4143061808 scopus 로고    scopus 로고
    • Increased incidence of vaginal septum in C57BL/6J mice since 1976
    • Gearhart S., Kalishman J., Melikyan H., Mason C., Kohn D.F. Increased incidence of vaginal septum in C57BL/6J mice since 1976. Comp. Med. 2004, 54:418-421.
    • (2004) Comp. Med. , vol.54 , pp. 418-421
    • Gearhart, S.1    Kalishman, J.2    Melikyan, H.3    Mason, C.4    Kohn, D.F.5
  • 14
    • 77953826984 scopus 로고    scopus 로고
    • Improved pairwise alignment of genomic DNA
    • PhD thesis (State College: The Pennsylvania State University).
    • Harris, R.S. (2007). Improved pairwise alignment of genomic DNA. PhD thesis (State College: The Pennsylvania State University).
    • (2007)
    • Harris, R.S.1
  • 15
    • 2942568227 scopus 로고    scopus 로고
    • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    • Hedges S.B., Blair J.E., Venturi M.L., Shoe J.L. A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol. Biol. 2004, 4:2.
    • (2004) BMC Evol. Biol. , vol.4 , pp. 2
    • Hedges, S.B.1    Blair, J.E.2    Venturi, M.L.3    Shoe, J.L.4
  • 16
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S., Benner C., Spann N., Bertolino E., Lin Y.C., Laslo P., Cheng J.X., Murre C., Singh H., Glass C.K. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 2010, 38:576-589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 17
    • 51149097760 scopus 로고    scopus 로고
    • Shadow enhancers as a source of evolutionary novelty
    • Hong J.W., Hendrix D.A., Levine M.S. Shadow enhancers as a source of evolutionary novelty. Science 2008, 321:1314.
    • (2008) Science , vol.321 , pp. 1314
    • Hong, J.W.1    Hendrix, D.A.2    Levine, M.S.3
  • 18
    • 84872376764 scopus 로고    scopus 로고
    • Pitx1 broadly associates with limb enhancers and is enriched on hindlimb cis-regulatory elements
    • Infante C.R., Park S., Mihala A.G., Kingsley D.M., Menke D.B. Pitx1 broadly associates with limb enhancers and is enriched on hindlimb cis-regulatory elements. Dev. Biol. 2013, 374:234-244.
    • (2013) Dev. Biol. , vol.374 , pp. 234-244
    • Infante, C.R.1    Park, S.2    Mihala, A.G.3    Kingsley, D.M.4    Menke, D.B.5
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 23
    • 84923602575 scopus 로고    scopus 로고
    • Development of hemipenes in the ball python snake Python regius
    • Leal F., Cohn M.J. Development of hemipenes in the ball python snake Python regius. Sex Dev. 2015, 9:6-20.
    • (2015) Sex Dev. , vol.9 , pp. 6-20
    • Leal, F.1    Cohn, M.J.2
  • 24
    • 84878580738 scopus 로고    scopus 로고
    • The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
    • Liao Y., Smyth G.K., Shi W. The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Res. 2013, 41:e108.
    • (2013) Nucleic Acids Res. , vol.41 , pp. e108
    • Liao, Y.1    Smyth, G.K.2    Shi, W.3
  • 25
    • 70450159800 scopus 로고    scopus 로고
    • Temporal and spatial dissection of Shh signaling in genital tubercle development
    • Lin C., Yin Y., Veith G.M., Fisher A.V., Long F., Ma L. Temporal and spatial dissection of Shh signaling in genital tubercle development. Development 2009, 136:3959-3967.
    • (2009) Development , vol.136 , pp. 3959-3967
    • Lin, C.1    Yin, Y.2    Veith, G.M.3    Fisher, A.V.4    Long, F.5    Ma, L.6
  • 27
    • 84911895715 scopus 로고    scopus 로고
    • Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci
    • Lonfat N., Montavon T., Darbellay F., Gitto S., Duboule D. Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci. Science 2014, 346:1004-1006.
    • (2014) Science , vol.346 , pp. 1004-1006
    • Lonfat, N.1    Montavon, T.2    Darbellay, F.3    Gitto, S.4    Duboule, D.5
  • 29
    • 50649114724 scopus 로고    scopus 로고
    • Dual hindlimb control elements in the Tbx4 gene and region-specific control of bone size in vertebrate limbs
    • Menke D.B., Guenther C., Kingsley D.M. Dual hindlimb control elements in the Tbx4 gene and region-specific control of bone size in vertebrate limbs. Development 2008, 135:2543-2553.
    • (2008) Development , vol.135 , pp. 2543-2553
    • Menke, D.B.1    Guenther, C.2    Kingsley, D.M.3
  • 30
    • 70450181790 scopus 로고    scopus 로고
    • Dosage-dependent hedgehog signals integrated with Wnt/beta-catenin signaling regulate external genitalia formation as an appendicular program
    • Miyagawa S., Moon A., Haraguchi R., Inoue C., Harada M., Nakahara C., Suzuki K., Matsumaru D., Kaneko T., Matsuo I., et al. Dosage-dependent hedgehog signals integrated with Wnt/beta-catenin signaling regulate external genitalia formation as an appendicular program. Development 2009, 136:3969-3978.
    • (2009) Development , vol.136 , pp. 3969-3978
    • Miyagawa, S.1    Moon, A.2    Haraguchi, R.3    Inoue, C.4    Harada, M.5    Nakahara, C.6    Suzuki, K.7    Matsumaru, D.8    Kaneko, T.9    Matsuo, I.10
  • 31
    • 0031050961 scopus 로고    scopus 로고
    • Mutation of HOXA13 in hand-foot-genital syndrome
    • Mortlock D.P., Innis J.W. Mutation of HOXA13 in hand-foot-genital syndrome. Nat. Genet. 1997, 15:179-180.
    • (1997) Nat. Genet. , vol.15 , pp. 179-180
    • Mortlock, D.P.1    Innis, J.W.2
  • 32
    • 0041971124 scopus 로고    scopus 로고
    • Loss of Tbx4 blocks hindlimb development and affects vascularization and fusion of the allantois
    • Naiche L.A., Papaioannou V.E. Loss of Tbx4 blocks hindlimb development and affects vascularization and fusion of the allantois. Development 2003, 130:2681-2693.
    • (2003) Development , vol.130 , pp. 2681-2693
    • Naiche, L.A.1    Papaioannou, V.E.2
  • 33
    • 77649239840 scopus 로고    scopus 로고
    • A likelihood method for assessing molecular divergence time estimates and the placement of fossil calibrations
    • Pyron R.A. A likelihood method for assessing molecular divergence time estimates and the placement of fossil calibrations. Syst. Biol. 2010, 59:185-194.
    • (2010) Syst. Biol. , vol.59 , pp. 185-194
    • Pyron, R.A.1
  • 34
    • 84855275864 scopus 로고    scopus 로고
    • Extinction, ecological opportunity, and the origins of global snake diversity
    • Pyron R.A., Burbrink F.T. Extinction, ecological opportunity, and the origins of global snake diversity. Evolution 2012, 66:163-178.
    • (2012) Evolution , vol.66 , pp. 163-178
    • Pyron, R.A.1    Burbrink, F.T.2
  • 35
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan A.R., Hall I.M. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26:841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 37
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson M.D., McCarthy D.J., Smyth G.K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 38
    • 38549088498 scopus 로고    scopus 로고
    • A developmental staging series for the lizard genus Anolis: a new system for the integration of evolution, development, and ecology
    • Sanger T.J., Losos J.B., Gibson-Brown J.J. A developmental staging series for the lizard genus Anolis: a new system for the integration of evolution, development, and ecology. J. Morphol. 2008, 269:129-137.
    • (2008) J. Morphol. , vol.269 , pp. 129-137
    • Sanger, T.J.1    Losos, J.B.2    Gibson-Brown, J.J.3
  • 39
    • 80755165294 scopus 로고    scopus 로고
    • Sonic hedgehog controls growth of external genitalia by regulating cell cycle kinetics
    • Seifert A.W., Zheng Z., Ormerod B.K., Cohn M.J. Sonic hedgehog controls growth of external genitalia by regulating cell cycle kinetics. Nat. Commun. 2010, 1:23.
    • (2010) Nat. Commun. , vol.1 , pp. 23
    • Seifert, A.W.1    Zheng, Z.2    Ormerod, B.K.3    Cohn, M.J.4
  • 41
    • 84879534846 scopus 로고    scopus 로고
    • Baculum morphology predicts reproductive success of male house mice under sexual selection
    • Stockley P., Ramm S.A., Sherborne A.L., Thom M.D.F., Paterson S., Hurst J.L. Baculum morphology predicts reproductive success of male house mice under sexual selection. BMC Biol. 2013, 11:66.
    • (2013) BMC Biol. , vol.11 , pp. 66
    • Stockley, P.1    Ramm, S.A.2    Sherborne, A.L.3    Thom, M.D.F.4    Paterson, S.5    Hurst, J.L.6
  • 42
    • 10744226161 scopus 로고    scopus 로고
    • Regulation of outgrowth and apoptosis for the terminal appendage: external genitalia development by concerted actions of BMP signaling [corrected]
    • Suzuki K., Bachiller D., Chen Y.P., Kamikawa M., Ogi H., Haraguchi R., Ogino Y., Minami Y., Mishina Y., Ahn K., et al. Regulation of outgrowth and apoptosis for the terminal appendage: external genitalia development by concerted actions of BMP signaling [corrected]. Development 2003, 130:6209-6220.
    • (2003) Development , vol.130 , pp. 6209-6220
    • Suzuki, K.1    Bachiller, D.2    Chen, Y.P.3    Kamikawa, M.4    Ogi, H.5    Haraguchi, R.6    Ogino, Y.7    Minami, Y.8    Mishina, Y.9    Ahn, K.10
  • 46
    • 33846112470 scopus 로고    scopus 로고
    • VISTA Enhancer Browser--a database of tissue-specific human enhancers
    • Visel A., Minovitsky S., Dubchak I., Pennacchio L.A. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Nucleic Acids Res. 2007, 35:D88-D92.
    • (2007) Nucleic Acids Res. , vol.35 , pp. D88-D92
    • Visel, A.1    Minovitsky, S.2    Dubchak, I.3    Pennacchio, L.A.4
  • 51
    • 69449108111 scopus 로고    scopus 로고
    • The anatomy of the upper cretaceous snake Najash rionegrina Apesteguía & Zaher, 2006, and the evolution of limblessness in snakes
    • Zaher H., Apesteguía S., Scanferla C.A. The anatomy of the upper cretaceous snake Najash rionegrina Apesteguía & Zaher, 2006, and the evolution of limblessness in snakes. Zool. J. Linn. Soc. 2009, 156:801-826.
    • (2009) Zool. J. Linn. Soc. , vol.156 , pp. 801-826
    • Zaher, H.1    Apesteguía, S.2    Scanferla, C.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.