4d atlas of the mouse embryo for precise morphological staging

Development (Cambridge)

Volumn 142, Issue 20, 2015, Pages 3583-3591

  Wong, Michael D ^a,b   Van Eede, Matthijs C ^a   Spring, Shoshana ^a   Jevtic, Stefan ^a   Boughner, Julia C ^c   Lerch, Jason P ^a,b   Mark Henkelman, R ^a,b  

^a HOSPITAL FOR SICK CHILDREN   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

3D; 4D; Development; Embryo; Imaging; OPT; Staging

Indexed keywords

ANATOMICAL CONCEPTS; ARTICLE; AUTOMATION; DEVELOPMENTAL BIOLOGY; DEVELOPMENTAL STAGE; EMBRYO; EMBRYO DEVELOPMENT; EX VIVO STUDY; FOUR DIMENSIONAL ATLAS STAGING SYSTEM; GESTATIONAL AGE; IMAGE ANALYSIS; MOUSE; NONHUMAN; OPTICAL PROJECTION TOMOGRAPHY; ORGAN GROWTH; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; THREE DIMENSIONAL IMAGING; TOMOGRAPHY; WILD TYPE; ANATOMY AND HISTOLOGY; ANIMAL; GENE EXPRESSION REGULATION; IMAGE PROCESSING; MAMMALIAN EMBRYO; OPTICAL TOMOGRAPHY; PHENOTYPE; PROCEDURES; SOFTWARE; TIME FACTOR;

ANIMALS; AUTOMATION; EMBRYO, MAMMALIAN; EMBRYONIC DEVELOPMENT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MICE; PHENOTYPE; SOFTWARE; TIME FACTORS; TOMOGRAPHY, OPTICAL;

EID: 84944811159     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.125872     Document Type: Article

References (18)

1. Adams, D., Baldock, R., Bhattacharya, S., Copp, A. J., Dickinson, M., Greene, N. D. E., Henkelman, M., Justice, M., Mohun, T., Murray, S. A. et al. (2013). Bloomsbury report on mouse embryo phenotyping: recommendations from the IMPC workshop on embryonic lethal screening. Dis. Model. Mech. 6, 571-579.
2. Boehm, B., Rautschka, M., Quintana, L., Raspopovic, J., Jan, Z. and Sharpe, J. (2011). A landmark-free morphometric staging system for the mouse limb bud. Development 138, 1227-1234.
3. Collins, D. L. and Evans, A. C. (1997). Animal: validation and applications of nonlinear registration-based segmentation. Int. J. Pattern Recogn. Artif. Intell. 11, 1271-1294.
4. Degenhardt, K., Wright, A. C., Horng, D., Padmanabhan, A. and Epstein, J. A. (2010). Rapid 3D phenotyping of cardiovascular development in mouse embryos by micro-CT with iodine staining. Circulation 3, 314-322.
5. Kovacevic, N. (2004). A Three-dimensional MRI Atlas of the Mouse Brain with Estimates of the Average and Variability. Cereb. Cortex 15, 639-645.
6. Metscher, B. D. (2009a). MicroCT for comparative morphology: simple staining methods allow high-contrast 3D imaging of diverse non-mineralized animal tissues. BMC Physiol. 9, 11.
7. Metscher, B. D. (2009b). MicroCT for developmental biology: a versatile tool for high-contrast 3D imaging at histological resolutions. Dev. Dyn. 238, 632-640.
8. Michos, O., Panman, L., Vintersten, K., Beier, K., Zeller, R. and Zuniga, A. (2004). Gremlin-mediated BMP antagonism induces the epithelial-mesenchymal feedback signaling controlling metanephric kidney and limb organogenesis. Development 131, 3401-3410.
9. Pang, S. C., Janzen-Pang, J., Yat Tse, M., Croy, A. and Tse, D. (2014). Implant Site Dissections. The Guide to Investigation of Mouse Pregnancy, pp. 21-42. London: Elsevier Inc.
10. Papaioannou, V. E. and Behringer, R. R. (2005). Mouse Phenotypes: A Handbook of Mutation Analysis, Vol. 5.2, pp. 78.
11. Pluim, J. P. W., Maintz, J. B. A. and Viergever, M. A. (2003). Mutual-informationbased registration of medical images: a survey. IEEE Trans. Med. Imaging 22, 986-1004.
12. Sharpe, J., Ahlgren, U., Perry, P., Hill, B., Ross, A., Hecksher-Sørensen, J., Baldock, R. and Davidson, D. (2002). Optical projection tomography as a tool for 3D microscopy and gene expression studies. Science 296, 541-545.
13. Szulc, K. U., Lerch, J. P., Nieman, B. J., Bartelle, B. B., Friedel, M., Suero-Abreu, G. A., Watson, C., Joyner, A. L. and Turnbull, D. H. (2015). 4D MEMRI atlas of neonatal FVB/N mouse brain development. Neuroimage 118, 49-62.
14. Theiler, K. (1972). The House Mouse. Development and Normal Stages from Fertilization to 4 weeks of Age. Teratology, pp. 248-249. New York: Springer.
15. Walls, J. R., Coultas, L., Rossant, J. and Henkelman, R. M. (2008). Threedimensional analysis of vascular development in the mouse embryo. PLoS ONE 3, e2853.
16. Wong, M. D., Dorr, A. E., Walls, J. R., Lerch, J. P. and Henkelman, R. M. (2012). A novel 3D mouse embryo atlas based on micro-CT. Development 139, 3248-3256.
17. Wong, M. D., Dazai, J., Walls, J. R., Gale, N. W. and Henkelman, R. M. (2013). Design and implementation of a custom built optical projection tomography system. PLoS ONE 8, e73491.
18. Wong, M. D., Maezawa, Y., Lerch, J. P. and Henkelman, R. M. (2014). Automated pipeline for anatomical phenotyping of mouse embryos using micro-CT. Development 141, 2533-2541.