-
1
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, et al: Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415(6868):141-147.
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
-
2
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001, 98(8):4569-4574.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
3
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, et al: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415(6868):180-183.
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
-
4
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu HY, Zhong GQ, Guo XH, Ignatchenko A, Li J, Pu SY, Datta N, Tikuisis AP, et al: Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006, 440(7084):637-643.
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.Y.3
Zhong, G.Q.4
Guo, X.H.5
Ignatchenko, A.6
Li, J.7
Pu, S.Y.8
Datta, N.9
Tikuisis, A.P.10
-
5
-
-
30644470508
-
Predicting protein interaction sites from residue spatial sequence profile and evolution rate
-
Wang B, Chen P, Huang DS, Li JJ, Lok TM, Lyu MR: Predicting protein interaction sites from residue spatial sequence profile and evolution rate. Febs Letters 2006, 580(2):380-384.
-
(2006)
Febs Letters
, vol.580
, Issue.2
, pp. 380-384
-
-
Wang, B.1
Chen, P.2
Huang, D.S.3
Li, J.J.4
Lok, T.M.5
Lyu, M.R.6
-
6
-
-
77958498250
-
Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data
-
You ZH, Lei YK, Gui J, Huang DS, Zhou XB: Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data. Bioinformatics 2010, 26(21):2744-2751.
-
(2010)
Bioinformatics
, vol.26
, Issue.21
, pp. 2744-2751
-
-
You, Z.H.1
Lei, Y.K.2
Gui, J.3
Huang, D.S.4
Zhou, X.B.5
-
7
-
-
78449281410
-
Predicting protein-protein interactions from protein sequences using meta predictor
-
Xia JF, Zhao XM, Huang DS: Predicting protein-protein interactions from protein sequences using meta predictor. Amino Acids 2010, 39(5):1595-1599.
-
(2010)
Amino Acids
, vol.39
, Issue.5
, pp. 1595-1599
-
-
Xia, J.F.1
Zhao, X.M.2
Huang, D.S.3
-
8
-
-
77950017573
-
Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor
-
Xia JF, Han K, Huang DS: Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor. Protein Pept Lett 2010, 17(1):137-145.
-
(2010)
Protein Pept Lett
, vol.17
, Issue.1
, pp. 137-145
-
-
Xia, J.F.1
Han, K.2
Huang, D.S.3
-
9
-
-
84875669119
-
LSE: A novel robust geometric approach for modeling protein-protein interaction networks
-
Zhu L, You ZH, Huang DS, Wang B: LSE: A novel robust geometric approach for modeling protein-protein interaction networks. PLoS One 2013, 8(4).
-
(2013)
PLoS One
, vol.8
, Issue.4
-
-
Zhu, L.1
You, Z.H.2
Huang, D.S.3
Wang, B.4
-
10
-
-
84893286042
-
Increasing reliability of protein interactome by fast manifold embedding
-
Lei YK, You ZH, Dong TB, Jiang YX, Yang JA: Increasing reliability of protein interactome by fast manifold embedding. Pattern Recognition Letters 2013, 34(4):372-379.
-
(2013)
Pattern Recognition Letters
, vol.34
, Issue.4
, pp. 372-379
-
-
Lei, Y.K.1
You, Z.H.2
Dong, T.B.3
Jiang, Y.X.4
Yang, J.A.5
-
11
-
-
44349159560
-
Using support vector machine combined with auto covariance to predict proteinprotein interactions from protein sequences
-
Guo YZ, Yu LZ, Wen ZN, Li ML: Using support vector machine combined with auto covariance to predict proteinprotein interactions from protein sequences. Nucleic Acids Res 2008, 36(9):3025-3030.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.9
, pp. 3025-3030
-
-
Guo, Y.Z.1
Yu, L.Z.2
Wen, Z.N.3
Li, M.L.4
-
12
-
-
77955106017
-
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
-
You Z-H, Yin Z, Han K, Huang D-S, Zhou X: A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network. BMC Bioinformatics 2010, 11.
-
(2010)
BMC Bioinformatics
, pp. 11
-
-
You, Z.-H.1
Yin, Z.2
Han, K.3
Huang, D.-S.4
Zhou, X.5
-
13
-
-
34248371273
-
Predictina protein-protein interactions based only on sequences information
-
Shen JW, Zhang J, Luo XM, Zhu WL, Yu KQ, Chen KX, Li YX, Jiang HL: Predictina protein-protein interactions based only on sequences information. Proc Natl Acad Sci USA 2007, 104(11):4337-4341.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.11
, pp. 4337-4341
-
-
Shen, J.W.1
Zhang, J.2
Luo, X.M.3
Zhu, W.L.4
Yu, K.Q.5
Chen, K.X.6
Li, Y.X.7
Jiang, H.L.8
-
14
-
-
34247586171
-
Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
-
Shoemaker BA, Panchenko AR: Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. Plos Computational Biology 2007, 3(4):595-601.
-
(2007)
Plos Computational Biology
, vol.3
, Issue.4
, pp. 595-601
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
15
-
-
39749147033
-
Protein classification with imbalanced data
-
Zhao XM, Li X, Chen L, Aihara K: Protein classification with imbalanced data. Proteins 2008, 70(4):1125-1132.
-
(2008)
Proteins
, vol.70
, Issue.4
, pp. 1125-1132
-
-
Zhao, X.M.1
Li, X.2
Chen, L.3
Aihara, K.4
-
16
-
-
84858991848
-
Discovering functional interdependence relationship in PPI networks for protein complex identification
-
Lam WWM, Chan KCC: Discovering functional interdependence relationship in PPI networks for protein complex identification. IEEE Trans Biomed Eng 2012, 59(4):899-908.
-
(2012)
IEEE Trans Biomed Eng
, vol.59
, Issue.4
, pp. 899-908
-
-
Lam, W.W.M.1
Chan, K.C.C.2
-
17
-
-
84883162967
-
Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis
-
You ZH, Lei YK, Zhu L, Xia JF, Wang B: Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis. BMC Bioinformatics 2013, 14.
-
(2013)
BMC Bioinformatics
, pp. 14
-
-
You, Z.H.1
Lei, Y.K.2
Zhu, L.3
Xia, J.F.4
Wang, B.5
-
18
-
-
84872807629
-
Assessing and predicting protein interactions by combining manifold embedding with multiple information integration
-
Lei YK, You ZH, Ji Z, Zhu L, Huang DS: Assessing and predicting protein interactions by combining manifold embedding with multiple information integration. BMC Bioinformatics 2012, 13.
-
(2012)
BMC Bioinformatics
, pp. 13
-
-
Lei, Y.K.1
You, Z.H.2
Ji, Z.3
Zhu, L.4
Huang, D.S.5
-
19
-
-
80052888681
-
Molecular pattern discovery based on penalized matrix decomposition
-
Zheng CH, Zhang L, Ng VTY, Shiu SCK, Huang DS: Molecular pattern discovery based on penalized matrix decomposition. IEEE-ACM Trans Comput Biol Bioinform 2011, 8(6):1592-1603.
-
(2011)
IEEE-ACM Trans Comput Biol Bioinform
, vol.8
, Issue.6
, pp. 1592-1603
-
-
Zheng, C.H.1
Zhang, L.2
Ng, V.T.Y.3
Shiu, S.C.K.4
Huang, D.S.5
-
20
-
-
79960919498
-
Metasample-based sparse representation for tumor classification
-
Zheng CH, Zhang L, Ng TY, Shiu SCK, Huang DS: Metasample-based sparse representation for tumor classification. IEEE-ACM Trans Comput Biol Bioinform 2011, 8(5):1273-1282.
-
(2011)
IEEE-ACM Trans Comput Biol Bioinform
, vol.8
, Issue.5
, pp. 1273-1282
-
-
Zheng, C.H.1
Zhang, L.2
Ng, T.Y.3
Shiu, S.C.K.4
Huang, D.S.5
-
21
-
-
50949093079
-
Protein function prediction with highthroughput data
-
Zhao XM, Chen LN, Aihara K: Protein function prediction with highthroughput data. Amino Acids 2008, 35(3):517-530.
-
(2008)
Amino Acids
, vol.35
, Issue.3
, pp. 517-530
-
-
Zhao, X.M.1
Chen, L.N.2
Aihara, K.3
-
22
-
-
77951237714
-
A discriminative approach for identifying domain-domain interactions from protein-protein interactions
-
Zhao XM, Chen LN, Aihara K: A discriminative approach for identifying domain-domain interactions from protein-protein interactions. Proteins 2010, 78(5):1243-1253.
-
(2010)
Proteins
, vol.78
, Issue.5
, pp. 1243-1253
-
-
Zhao, X.M.1
Chen, L.N.2
Aihara, K.3
-
23
-
-
26944462332
-
A novel approach to extracting features from motif content and protein composition for protein sequence classification
-
Zhao XM, Cheung YM, Huang DS: A novel approach to extracting features from motif content and protein composition for protein sequence classification. Neural Networks 2005, 18(8):1019-1028.
-
(2005)
Neural Networks
, vol.18
, Issue.8
, pp. 1019-1028
-
-
Zhao, X.M.1
Cheung, Y.M.2
Huang, D.S.3
-
24
-
-
84863018899
-
Robust classification method of tumor subtype by using correlation filters
-
Wang SL, Zhu YH, Jia W, Huang DS: Robust classification method of tumor subtype by using correlation filters. IEEE-ACM Trans Comput Biol Bioinform 2012, 9(2):580-591.
-
(2012)
IEEE-ACM Trans Comput Biol Bioinform
, vol.9
, Issue.2
, pp. 580-591
-
-
Wang, S.L.1
Zhu, Y.H.2
Jia, W.3
Huang, D.S.4
-
27
-
-
84880328224
-
Graphical representation for DNA sequences via joint diagonalization of matrix pencil
-
Yu HJ, Huang DS: Graphical representation for DNA sequences via joint diagonalization of matrix pencil. IEEE J Biomed Health Inform 2013, 17(3):503-511.
-
(2013)
IEEE J Biomed Health Inform
, vol.17
, Issue.3
, pp. 503-511
-
-
Yu, H.J.1
Huang, D.S.2
-
28
-
-
84882954143
-
Normalized Feature Vectors: A novel alignment-free sequence comparison method based on the numbers of adjacent amino acids
-
Huang DS, Yu HJ: Normalized Feature Vectors: A novel alignment-free sequence comparison method based on the numbers of adjacent amino acids. IEEE-ACM Trans Comput Biol Bioinform 2013, 10(2):457-467.
-
(2013)
IEEE-ACM Trans Comput Biol Bioinform
, vol.10
, Issue.2
, pp. 457-467
-
-
Huang, D.S.1
Yu, H.J.2
-
29
-
-
79958028560
-
Adaptive compressive learning for prediction of protein-protein interactions from primary sequence
-
Zhang YN, Pan XY, Huang Y, Shen HB: Adaptive compressive learning for prediction of protein-protein interactions from primary sequence. J Theor Biol 2011, 283(1):44-52.
-
(2011)
J Theor Biol
, vol.283
, Issue.1
, pp. 44-52
-
-
Zhang, Y.N.1
Pan, X.Y.2
Huang, Y.3
Shen, H.B.4
-
30
-
-
77957356489
-
Large-scale prediction of human proteinprotein interactions from amino acid sequence based on latent topic features
-
Pan XY, Zhang YN, Shen HB: Large-scale prediction of human proteinprotein interactions from amino acid sequence based on latent topic features. J Proteome Res 2010, 9(10):4992-5001.
-
(2010)
J Proteome Res
, vol.9
, Issue.10
, pp. 4992-5001
-
-
Pan, X.Y.1
Zhang, Y.N.2
Shen, H.B.3
-
31
-
-
77951667947
-
Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset
-
Shi MG, Xia JF, Li XL, Huang DS: Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset. Amino Acids 2010, 38(3):891-899.
-
(2010)
Amino Acids
, vol.38
, Issue.3
, pp. 891-899
-
-
Shi, M.G.1
Xia, J.F.2
Li, X.L.3
Huang, D.S.4
-
32
-
-
84907417781
-
Large-scale protein-protein interactions detection by integrating big biosensing data with computational model
-
You Z-H, Li S, Gao X, Luo X, Ji Z: Large-scale protein-protein interactions detection by integrating big biosensing data with computational model. BioMed Research International 2014, 2014.
-
(2014)
BioMed Research International
, pp. 2014
-
-
You, Z.-H.1
Li, S.2
Gao, X.3
Luo, X.4
Ji, Z.5
-
33
-
-
24344458137
-
Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and minredundancy
-
Peng HC, Long FH, Ding C: Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and minredundancy. IEEE Trans Pattern Anal Mach Intell 2005, 27(8):1226-1238.
-
(2005)
IEEE Trans Pattern Anal Mach Intell
, vol.27
, Issue.8
, pp. 1226-1238
-
-
Peng, H.C.1
Long, F.H.2
Ding, C.3
-
35
-
-
79960395689
-
Prediction of protein-protein interactions using local description of amino acid sequence
-
Berlin: Springer-Verlag Berlin;Zhou M, Tan HH
-
Zhou YZ, Gao Y, Zheng YY: Prediction of protein-protein interactions using local description of amino acid sequence. In Advances in Computer Science and Education Applications, Pt Ii. Volume 202. Berlin: Springer-Verlag Berlin;Zhou M, Tan HH 2011:254-262.
-
(2011)
Advances in Computer Science and Education Applications, Pt Ii
, vol.202
, pp. 254-262
-
-
Zhou, Y.Z.1
Gao, Y.2
Zheng, Y.Y.3
-
36
-
-
78449307593
-
Prediction of protein-protein interactions from protein sequence using local descriptors
-
Yang L, Xia JF, Gui J: Prediction of protein-protein interactions from protein sequence using local descriptors. Protein Pept Lett 2010, 17(9):1085-1090.
-
(2010)
Protein Pept Lett
, vol.17
, Issue.9
, pp. 1085-1090
-
-
Yang, L.1
Xia, J.F.2
Gui, J.3
-
37
-
-
13444262436
-
Predicting protein-protein interactions using signature products
-
Martin S, Roe D, Faulon JL: Predicting protein-protein interactions using signature products. Bioinformatics 2005, 21(2):218-226.
-
(2005)
Bioinformatics
, vol.21
, Issue.2
, pp. 218-226
-
-
Martin, S.1
Roe, D.2
Faulon, J.L.3
-
38
-
-
0037249217
-
Whole-proteome interaction mining
-
Bock JR, Gough DA: Whole-proteome interaction mining. Bioinformatics 2003, 19(1):125-134.
-
(2003)
Bioinformatics
, vol.19
, Issue.1
, pp. 125-134
-
-
Bock, J.R.1
Gough, D.A.2
-
39
-
-
27844440887
-
Hyperplanes for predicting protein-protein interactions
-
Nanni L: Hyperplanes for predicting protein-protein interactions. Neurocomputing 2005, 69(1-3):257-263.
-
(2005)
Neurocomputing
, vol.69
, Issue.1-3
, pp. 257-263
-
-
Nanni, L.1
-
40
-
-
33646871614
-
An ensemble of K-local hyperplanes for predicting protein-protein interactions
-
Nanni L, Lumini A: An ensemble of K-local hyperplanes for predicting protein-protein interactions. Bioinformatics 2006, 22(10):1207-1210.
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1207-1210
-
-
Nanni, L.1
Lumini, A.2
-
41
-
-
84856347308
-
Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches
-
Li BQ, Hu LL, Niu S, Cai YD, Chou KC: Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches. J Proteomics 2012, 75(5):1654-1665.
-
(2012)
J Proteomics
, vol.75
, Issue.5
, pp. 1654-1665
-
-
Li, B.Q.1
Hu, L.L.2
Niu, S.3
Cai, Y.D.4
Chou, K.C.5
-
42
-
-
0029047319
-
Prediction of protein folding class using global description of amino acid sequence
-
Dubchak I, Muchnik I, Holbrook SR, Kim SH: Prediction of protein folding class using global description of amino acid sequence. Proc Natl Acad Sci USA 1995, 92(19):8700-8704.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, Issue.19
, pp. 8700-8704
-
-
Dubchak, I.1
Muchnik, I.2
Holbrook, S.R.3
Kim, S.H.4
|