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Volumn 10, Issue 9, 2015, Pages

Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RESTRICTION SITE ASSOCIATED DNA; UNCLASSIFIED DRUG; GENETIC MARKER;

EID: 84944735506     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0138435     Document Type: Article
Times cited : (73)

References (43)
  • 1
    • 84874630732 scopus 로고    scopus 로고
    • A review of Flavobacterium psychrophilum biology, clinical signs, and bacterial cold water disease prevention and treatment
    • Barnes M, Brown M (2011) A review of Flavobacterium psychrophilum biology, clinical signs, and bacterial cold water disease prevention and treatment. The Open Fish Science Journal 4: 40-48.
    • (2011) The Open Fish Science Journal , vol.4 , pp. 40-48
    • Barnes, M.1    Brown, M.2
  • 3
    • 78649645418 scopus 로고    scopus 로고
    • Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis
    • 20833766
    • Vallejo RL, Wiens GD, Rexroad CE III, Welch TJ, Evenhuis JP, Leeds TD, et al. (2010) Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis. J Anim Sci 88: 3814-3832. doi: 10.2527/jas.2010-2951 PMID: 20833766
    • (2010) J Anim Sci , vol.88 , pp. 3814-3832
    • Vallejo, R.L.1    Wiens, G.D.2    Rexroad, C.E.3    Welch, T.J.4    Evenhuis, J.P.5    Leeds, T.D.6
  • 4
    • 84899486184 scopus 로고    scopus 로고
    • Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum
    • Vallejo RL, Palti Y, Liu S, Evenhuis JP, Gao G, Rexroad CE 3rd, et al. (2014) Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum. Mar Biotechnol (NY) 16: 349-360.
    • (2014) Mar Biotechnol (NY) , vol.16 , pp. 349-360
    • Vallejo, R.L.1    Palti, Y.2    Liu, S.3    Evenhuis, J.P.4    Gao, G.5    Rexroad, C.E.6
  • 5
    • 84939954149 scopus 로고    scopus 로고
    • Identification of single-nucleotide polymorphism markers Associated with Cortisol Response to Crowding in Rainbow Trout
    • 25652693
    • Liu S, Vallejo R, Gao G, Palti Y, Weber G, Hernandez A, et al. (2015) Identification of Single-Nucleotide Polymorphism Markers Associated with Cortisol Response to Crowding in Rainbow Trout. Marine Biotechnology 17: 328-337. doi: 10.1007/s10126-015-9621-4 PMID: 25652693
    • (2015) Marine Biotechnology , vol.17 , pp. 328-337
    • Liu, S.1    Vallejo, R.2    Gao, G.3    Palti, Y.4    Weber, G.5    Hernandez, A.6
  • 6
    • 84881556191 scopus 로고    scopus 로고
    • Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection
    • Rexroad CE, Vallejo RL, Liu S, Palti Y, Weber GM (2013) Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection. Mar Biotechnol (NY) 15: 613-627.
    • (2013) Mar Biotechnol (NY) , vol.15 , pp. 613-627
    • Rexroad, C.E.1    Vallejo, R.L.2    Liu, S.3    Palti, Y.4    Weber, G.M.5
  • 7
    • 84917731160 scopus 로고    scopus 로고
    • Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum
    • Marancik D, Gao G, Paneru B, Ma H, Hernandez AG, Salem M, et al. (2015) Whole-body transcriptome of selectively bred, resistant-, control-, and susceptible-line rainbow trout following experimental challenge with Flavobacterium psychrophilum. Frontiers in Genetics 5.
    • (2015) Frontiers in Genetics , vol.5
    • Marancik, D.1    Gao, G.2    Paneru, B.3    Ma, H.4    Hernandez, A.G.5    Salem, M.6
  • 9
    • 33846874137 scopus 로고    scopus 로고
    • Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
    • 17189378
    • Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA (2007) Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Research 17: 240-248. PMID: 17189378
    • (2007) Genome Research , vol.17 , pp. 240-248
    • Miller, M.R.1    Dunham, J.P.2    Amores, A.3    Cresko, W.A.4    Johnson, E.A.5
  • 11
    • 84898461075 scopus 로고    scopus 로고
    • A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids
    • 24251403
    • Palti Y, Gao G, Miller MR, Vallejo RL, Wheeler PA, Quillet E, et al. (2014) A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids. Molecular Ecology Resources 14: 588-596. doi: 10.1111/1755-0998.12204 PMID: 24251403
    • (2014) Molecular Ecology Resources , vol.14 , pp. 588-596
    • Palti, Y.1    Gao, G.2    Miller, M.R.3    Vallejo, R.L.4    Wheeler, P.A.5    Quillet, E.6
  • 12
    • 84893941532 scopus 로고    scopus 로고
    • Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
    • 24524230
    • Houston R, Taggart J, Cezard T, Bekaert M, Lowe N, Downing A, et al. (2014) Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar). BMC Genomics 15: 90. doi: 10.1186/1471-2164-15-90 PMID: 24524230
    • (2014) BMC Genomics , vol.15 , pp. 90
    • Houston, R.1    Taggart, J.2    Cezard, T.3    Bekaert, M.4    Lowe, N.5    Downing, A.6
  • 13
    • 84896922993 scopus 로고    scopus 로고
    • A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence after an Ancestral Whole Genome Duplication Event
    • Brieuc MSO, Waters CD, Seeb JE, Naish KA (2014) A Dense Linkage Map for Chinook salmon (Oncorhynchus tshawytscha) Reveals Variable Chromosomal Divergence After an Ancestral Whole Genome Duplication Event. G3-Genes Genomes Genetics 4: 447-460.
    • (2014) G3-Genes Genomes Genetics , vol.4 , pp. 447-460
    • Brieuc, M.S.O.1    Waters, C.D.2    Seeb, J.E.3    Naish, K.A.4
  • 14
    • 84897536692 scopus 로고    scopus 로고
    • Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing
    • 24571138
    • Gonen S, Lowe N, Cezard T, Gharbi K, Bishop S, Houston R (2014) Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing. BMC Genomics 15: 166. doi: 10.1186/1471-2164-15-166 PMID: 24571138
    • (2014) BMC Genomics , vol.15 , pp. 166
    • Gonen, S.1    Lowe, N.2    Cezard, T.3    Gharbi, K.4    Bishop, S.5    Houston, R.6
  • 15
    • 84855456602 scopus 로고    scopus 로고
    • A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
    • 21988725
    • Miller MR, Brunelli JP, Wheeler PA, Liu S, Rexroad CE, Palti Y, et al. (2012) A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Molecular Ecology 21: 237-249. doi: 10.1111/j.1365-294X.2011.05305.x PMID: 21988725
    • (2012) Molecular Ecology , vol.21 , pp. 237-249
    • Miller, M.R.1    Brunelli, J.P.2    Wheeler, P.A.3    Liu, S.4    Rexroad, C.E.5    Palti, Y.6
  • 16
    • 84862183890 scopus 로고    scopus 로고
    • Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon
    • Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, et al. (2012) Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon. BMC Genomics 13.
    • (2012) BMC Genomics , vol.13
    • Houston, R.D.1    Davey, J.W.2    Bishop, S.C.3    Lowe, N.R.4    Mota-Velasco, J.C.5    Hamilton, A.6
  • 17
    • 84883236704 scopus 로고    scopus 로고
    • Evaluating Adaptive Divergence between Migratory and Nonmigratory Ecotypes of a Salmonid Fish, Oncorhynchus mykiss
    • 23797103
    • Hale MC, Thrower FP, Berntson EA, Miller MR, Nichols KM (2013) Evaluating Adaptive Divergence Between Migratory and Nonmigratory Ecotypes of a Salmonid Fish, Oncorhynchus mykiss. G3: Genes| Genomes|Genetics 3: 1273-1285. doi: 10.1534/g3.113.006817 PMID: 23797103
    • (2013) G3: Genes| Genomes|Genetics , vol.3 , pp. 1273-1285
    • Hale, M.C.1    Thrower, F.P.2    Berntson, E.A.3    Miller, M.R.4    Nichols, K.M.5
  • 18
    • 84883150910 scopus 로고    scopus 로고
    • Genetic Architecture of Migration-Related Traits in Rainbow and Steelhead Trout, Oncorhynchus mykiss
    • 22973549
    • Hecht BC, Thrower FP, Hale MC, Miller MR, Nichols KM (2012) Genetic Architecture of Migration-Related Traits in Rainbow and Steelhead Trout, Oncorhynchus mykiss. G3: Genes|Genomes|Genetics 2: 1113-1127. doi: 10.1534/g3.112.003137 PMID: 22973549
    • (2012) G3: Genes|Genomes|Genetics , vol.2 , pp. 1113-1127
    • Hecht, B.C.1    Thrower, F.P.2    Hale, M.C.3    Miller, M.R.4    Nichols, K.M.5
  • 19
    • 84916897628 scopus 로고    scopus 로고
    • Association mapping of disease resistance traits in rainbow trout using restriction site associated DNA sequencing
    • 25354781
    • Campbell NR, LaPatra SE, Overturf K, Towner R, Narum SR (2014) Association Mapping of Disease Resistance Traits in Rainbow Trout Using Restriction Site Associated DNA Sequencing. G3: Genes| Genomes|Genetics 4: 2473-2481. doi: 10.1534/g3.114.014621 PMID: 25354781
    • (2014) G3: Genes| Genomes|Genetics , vol.4 , pp. 2473-2481
    • Campbell, N.R.1    LaPatra, S.E.2    Overturf, K.3    Towner, R.4    Narum, S.R.5
  • 20
    • 84878468709 scopus 로고    scopus 로고
    • Thermal adaptation and acclimation of ectotherms from differing aquatic climates
    • 23452191
    • Narum SR, Campbell NR, Meyer KA, Miller MR, Hardy RW (2013) Thermal adaptation and acclimation of ectotherms from differing aquatic climates. Molecular Ecology 22: 3090-3097. doi: 10.1111/mec. 12240 PMID: 23452191
    • (2013) Molecular Ecology , vol.22 , pp. 3090-3097
    • Narum, S.R.1    Campbell, N.R.2    Meyer, K.A.3    Miller, M.R.4    Hardy, R.W.5
  • 21
    • 84878438897 scopus 로고    scopus 로고
    • Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout
    • 23106605
    • Hecht BC, Campbell NR, Holecek DE, Narum SR (2013) Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Molecular Ecology 22: 3061-3076. doi: 10.1111/mec.12082 PMID: 23106605
    • (2013) Molecular Ecology , vol.22 , pp. 3061-3076
    • Hecht, B.C.1    Campbell, N.R.2    Holecek, D.E.3    Narum, S.R.4
  • 22
    • 84899099281 scopus 로고    scopus 로고
    • The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
    • 24755649
    • Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noel B, et al. (2014) The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nat Commun 5: 3657. doi: 10.1038/ncomms4657 PMID: 24755649
    • (2014) Nat Commun , vol.5 , pp. 3657
    • Berthelot, C.1    Brunet, F.2    Chalopin, D.3    Juanchich, A.4    Bernard, M.5    Noel, B.6
  • 23
    • 33646893710 scopus 로고    scopus 로고
    • Evaluation of family growth response to fishmeal and gluten-based diets in rainbow trout (Oncorhynchus mykiss)
    • Palti Y, Silverstein JT, Wieman H, Phillips JG, Barrows FT, Parsons JE (2006) Evaluation of family growth response to fishmeal and gluten-based diets in rainbow trout (Oncorhynchus mykiss). Aquaculture 255: 548-556.
    • (2006) Aquaculture , vol.255 , pp. 548-556
    • Palti, Y.1    Silverstein, J.T.2    Wieman, H.3    Phillips, J.G.4    Barrows, F.T.5    Parsons, J.E.6
  • 24
    • 0028343233 scopus 로고
    • Automated construction of genetic linkage maps using an expert system (MultiMap): A human genome linkage map
    • 8054979
    • Matise TC, Perlin M, Chakravarti A (1994) Automated construction of genetic linkage maps using an expert system (MultiMap): a human genome linkage map. Nat Genet 6: 384-390. PMID: 8054979
    • (1994) Nat Genet , vol.6 , pp. 384-390
    • Matise, T.C.1    Perlin, M.2    Chakravarti, A.3
  • 25
    • 0000732266 scopus 로고
    • The estimation of map distance from recombination values
    • Kosambi DD (1944) The estimation of map distance from recombination values. Annals of Eugenics 12: 172-175.
    • (1944) Annals of Eugenics , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 26
    • 58049215494 scopus 로고    scopus 로고
    • A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    • 19019240
    • Rexroad CE 3rd, Palti Y, Gahr SA, Vallejo RL (2008) A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BMC Genet 9:74. doi: 10.1186/1471-2156-9-74 PMID: 19019240
    • (2008) BMC Genet , vol.9 , pp. 74
    • Rexroad, C.E.1    Palti, Y.2    Gahr, S.A.3    Vallejo, R.L.4
  • 27
    • 84859431356 scopus 로고    scopus 로고
    • A Second Generation Integrated Map of the Rainbow Trout (Oncorhynchus mykiss) Genome: Analysis of Conserved Synteny with Model Fish Genomes
    • 22101344
    • Palti Y, Genet C, Gao G, Hu Y, You F, Boussaha M, et al. (2012) A Second Generation Integrated Map of the Rainbow Trout (Oncorhynchus mykiss) Genome: Analysis of Conserved Synteny with Model Fish Genomes. Marine Biotechnology 14: 343-357. doi: 10.1007/s10126-011-9418-z PMID: 22101344
    • (2012) Marine Biotechnology , vol.14 , pp. 343-357
    • Palti, Y.1    Genet, C.2    Gao, G.3    Hu, Y.4    You, F.5    Boussaha, M.6
  • 29
    • 34447324105 scopus 로고    scopus 로고
    • GenABEL: An R library for genorne-wide association analysis
    • 17384015
    • Aulchenko YS, Ripke S, Isaacs A, Van Duijn CM (2007) GenABEL: an R library for genorne-wide association analysis. Bioinformatics 23: 1294-1296. PMID: 17384015
    • (2007) Bioinformatics , vol.23 , pp. 1294-1296
    • Aulchenko, Y.S.1    Ripke, S.2    Isaacs, A.3    Van Duijn, C.M.4
  • 31
    • 0030982338 scopus 로고    scopus 로고
    • Multiple marker mapping of quantitative trait loci in an outbred pedigree of loblolly pine
    • Knott SA, Neale DB, Sewell MM, Haley CS (1997) Multiple marker mapping of quantitative trait loci in an outbred pedigree of loblolly pine. Theoretical and Applied Genetics 94: 810-820.
    • (1997) Theoretical and Applied Genetics , vol.94 , pp. 810-820
    • Knott, S.A.1    Neale, D.B.2    Sewell, M.M.3    Haley, C.S.4
  • 32
    • 0345109253 scopus 로고    scopus 로고
    • Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa)
    • 10430592
    • de Koning DJ, Janss LLG, Rattink AP, van Oers PAM, de Vries BJ, Groenen MAM, et al. (1999) Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa). Genetics 152: 1679-1690. PMID: 10430592
    • (1999) Genetics , vol.152 , pp. 1679-1690
    • De Koning, D.J.1    Janss, L.L.G.2    Rattink, A.P.3    Van Oers, P.A.M.4    De Vries, B.J.5    Groenen, M.A.M.6
  • 33
    • 0029843418 scopus 로고    scopus 로고
    • Methods for multiple-marker mapping of quantitative trait loci in half-sib populations
    • 24162201
    • Knott SA, Elsen JM, Haley CS (1996) Methods for multiple-marker mapping of quantitative trait loci in half-sib populations. Theoretical and Applied Genetics 93: 71-80. doi: 10.1007/BF00225729 PMID: 24162201
    • (1996) Theoretical and Applied Genetics , vol.93 , pp. 71-80
    • Knott, S.A.1    Elsen, J.M.2    Haley, C.S.3
  • 35
    • 84926435234 scopus 로고    scopus 로고
    • The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout
    • 25294387
    • Palti Y, Gao G, Liu S, Kent MP, Lien S, Miller MR, et al. (2015) The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout. Molecular Ecology Resources 15: 662-672. doi: 10.1111/1755-0998.12337 PMID: 25294387
    • (2015) Molecular Ecology Resources , vol.15 , pp. 662-672
    • Palti, Y.1    Gao, G.2    Liu, S.3    Kent, M.P.4    Lien, S.5    Miller, M.R.6
  • 36
    • 34250076764 scopus 로고
    • Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus
    • 24197326
    • Darvasi A, Soller M (1992) Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theoretical and Applied Genetics 85: 353-359. doi: 10.1007/BF00222881 PMID: 24197326
    • (1992) Theoretical and Applied Genetics , vol.85 , pp. 353-359
    • Darvasi, A.1    Soller, M.2
  • 37
    • 0036625843 scopus 로고    scopus 로고
    • Stress in fishes: A diversity of responses with particular reference to changes in circulating corticosteroids
    • 21708747
    • Barton BA (2002) Stress in fishes: A diversity of responses with particular reference to changes in circulating corticosteroids. Integrative and Comparative Biology 42: 517-525. doi: 10.1093/icb/42.3.517 PMID: 21708747
    • (2002) Integrative and Comparative Biology , vol.42 , pp. 517-525
    • Barton, B.A.1
  • 38
  • 39
    • 84901237658 scopus 로고    scopus 로고
    • Validation of linked QTL for bacterial cold water disease resistance and spleen size on rainbow trout chromosome Omy19
    • Vallejo RL, Palti Y, Liu S, Marancik DP, Wiens GD (2014) Validation of linked QTL for bacterial cold water disease resistance and spleen size on rainbow trout chromosome Omy19. Aquaculture 432: 139-143.
    • (2014) Aquaculture , vol.432 , pp. 139-143
    • Vallejo, R.L.1    Palti, Y.2    Liu, S.3    Marancik, D.P.4    Wiens, G.D.5
  • 40
    • 84885150379 scopus 로고    scopus 로고
    • Assessment of Genetic Correlation between Bacterial Cold Water Disease Resistance and Spleen Index in a Domesticated Population of Rainbow Trout: Identification of QTL on Chromosome Omy19
    • 24130739
    • Wiens GD, Vallejo RL, Leeds TD, Palti Y, Hadidi S, Liu S, et al. (2013) Assessment of Genetic Correlation between Bacterial Cold Water Disease Resistance and Spleen Index in a Domesticated Population of Rainbow Trout: Identification of QTL on Chromosome Omy19. PLoS ONE 8: e75749. doi: 10.1371/journal.pone.0075749 PMID: 24130739
    • (2013) PLoS ONE , vol.8
    • Wiens, G.D.1    Vallejo, R.L.2    Leeds, T.D.3    Palti, Y.4    Hadidi, S.5    Liu, S.6
  • 41
    • 84939230471 scopus 로고    scopus 로고
    • Stress-immune-growth interactions: Cortisol modulates suppressors of cytokine signaling and JAK/STAT pathway in rainbow trout liver
    • 26083490
    • Philip AM, Vijayan MM (2015) Stress-Immune-Growth Interactions: Cortisol Modulates Suppressors of Cytokine Signaling and JAK/STAT Pathway in Rainbow Trout Liver. PLoS ONE 10: e0129299. doi: 10. 1371/journal.pone.0129299 PMID: 26083490
    • (2015) PLoS ONE , vol.10
    • Philip, A.M.1    Vijayan, M.M.2
  • 42
    • 77955509770 scopus 로고    scopus 로고
    • Identification of suppressor of cytokine signalling (SOCS) 6, 7, 9 and CISH in rainbow trout Oncorhynchus mykiss and analysis of their expression in relation to other known trout SOCS
    • Wang T, Gao Q, Nie P, Secombes CJ (2010) Identification of suppressor of cytokine signalling (SOCS) 6, 7, 9 and CISH in rainbow trout Oncorhynchus mykiss and analysis of their expression in relation to other known trout SOCS. Fish & Shellfish Immunology 29: 656-667.
    • (2010) Fish & Shellfish Immunology , vol.29 , pp. 656-667
    • Wang, T.1    Gao, Q.2    Nie, P.3    Secombes, C.J.4
  • 43
    • 84895886978 scopus 로고    scopus 로고
    • RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout
    • 24558395
    • Liu S, Gao G, Palti Y, Cleveland BM, Weber GM, Rexroad CE III (2014) RNA-seq Analysis of Early Hepatic Response to Handling and Confinement Stress in Rainbow Trout. PLoS ONE 9: e88492. doi: 10.1371/journal.pone.0088492 PMID: 24558395
    • (2014) PLoS ONE , vol.9
    • Liu, S.1    Gao, G.2    Palti, Y.3    Cleveland, B.M.4    Weber, G.M.5    Rexroad, C.E.6


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