메뉴 건너뛰기




Volumn 11, Issue 6, 2015, Pages 1756-1768

Statistical treatment of 2D NMR COSY spectra in metabolomics: data preparation, clustering-based evaluation of the Metabolomic Informative Content and comparison with 1H-NMR

Author keywords

COSY spectra; Metabolomic Informative Content; Multivariate clustering algorithms; Peak lists; Real data

Indexed keywords

BIOLOGICAL MARKER;

EID: 84944280325     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-015-0830-7     Document Type: Article
Times cited : (33)

References (34)
  • 1
    • 85018143133 scopus 로고    scopus 로고
    • NMR and Chemistry (Manual), Cheltenham UK
    • Akitt J.W., Mann B.E. (2000). NMR and Chemistry (Manual), Cheltenham UK, Stanley Thornes. p. 287.
    • (2000) Stanley Thornes , pp. 287
    • Akitt, J.W.1    Mann, B.E.2
  • 2
    • 0006393051 scopus 로고
    • Two-dimensional spectroscopy. Application to nuclear magnetic resonance
    • COI: 1:CAS:528:DyaE28Xht1yntro%3D
    • Aue, W. P., Bartholdi, E., & Ernst, R. R. (1976). Two-dimensional spectroscopy. Application to nuclear magnetic resonance. The Journal of Chemical Physics, 64, 2229–2246.
    • (1976) The Journal of Chemical Physics , vol.64 , pp. 2229-2246
    • Aue, W.P.1    Bartholdi, E.2    Ernst, R.R.3
  • 3
    • 84856252543 scopus 로고    scopus 로고
    • Deconvolution of chemical mixtures with high complexity by NMR consensus trace clustering
    • PID: 21848333
    • Bruschweiler, R., & Bingol, K. (2011). Deconvolution of chemical mixtures with high complexity by NMR consensus trace clustering. Analytical Chemistry, 83(19), 7412–7417.
    • (2011) Analytical Chemistry , vol.83 , Issue.19 , pp. 7412-7417
    • Bruschweiler, R.1    Bingol, K.2
  • 5
    • 33645663178 scopus 로고    scopus 로고
    • Scaling and normalization effects in NMR spectroscopic metabonomic data sets
    • COI: 1:CAS:528:DC%2BD28XhsFartL0%3D, PID: 16579606
    • Craig, A., Cloarec, O., Holmes, E., Nicholson, J. K., & Lindon, J. C. (2006). Scaling and normalization effects in NMR spectroscopic metabonomic data sets. Analytical Chemistry, 78, 2262–2267.
    • (2006) Analytical Chemistry , vol.78 , pp. 2262-2267
    • Craig, A.1    Cloarec, O.2    Holmes, E.3    Nicholson, J.K.4    Lindon, J.C.5
  • 7
    • 0015644825 scopus 로고
    • A fuzzy relative of the ISODATA process and its use in detecting compact well-separated clusters
    • Dunn, J. C. (1973). A fuzzy relative of the ISODATA process and its use in detecting compact well-separated clusters. Journal of Cybernetics, 3(3), 32–57.
    • (1973) Journal of Cybernetics , vol.3 , Issue.3 , pp. 32-57
    • Dunn, J.C.1
  • 8
    • 58149471995 scopus 로고    scopus 로고
    • Evaluation of Ultrafast 2D NMR for quantitative analysis
    • COI: 1:CAS:528:DC%2BD1cXhsVWrur%2FF, PID: 19117469
    • Giraudeau, P., Remaud, G., & Akoka, S. (2009). Evaluation of Ultrafast 2D NMR for quantitative analysis. Analytical Chemistry, 81(1), 479–484.
    • (2009) Analytical Chemistry , vol.81 , Issue.1 , pp. 479-484
    • Giraudeau, P.1    Remaud, G.2    Akoka, S.3
  • 9
    • 0001138328 scopus 로고
    • A K-means clustering algorithm
    • Hartigan, J. A., & Wong, M. A. (1979). A K-means clustering algorithm. Applied Statistics, 28, 100–108.
    • (1979) Applied Statistics , vol.28 , pp. 100-108
    • Hartigan, J.A.1    Wong, M.A.2
  • 10
    • 0036249270 scopus 로고    scopus 로고
    • Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings
    • COI: 1:CAS:528:DC%2BD38Xjt1amsrs%3D, PID: 11966424
    • Holliday, J. D., Hu, C. Y., & Willett, P. (2002). Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings. Combinatorial Chemistry and High Throughput Screening, 5(2), 155–166.
    • (2002) Combinatorial Chemistry and High Throughput Screening , vol.5 , Issue.2 , pp. 155-166
    • Holliday, J.D.1    Hu, C.Y.2    Willett, P.3
  • 14
    • 84902821405 scopus 로고    scopus 로고
    • Evaluation of fast 2D NMR for metabolomics
    • COI: 1:CAS:528:DC%2BC2cXos1Wmtbs%3D, PID: 24856256
    • Le Guennec, A., Giraudeau, P., & Caldarelli, S. (2014). Evaluation of fast 2D NMR for metabolomics. Analytical chemistry, 86(12), 5946–5954.
    • (2014) Analytical chemistry , vol.86 , Issue.12 , pp. 5946-5954
    • Le Guennec, A.1    Giraudeau, P.2    Caldarelli, S.3
  • 17
    • 84944277173 scopus 로고    scopus 로고
    • MacQueen J. B. (1967). Some Methods for classification and Analysis of Multivariate Observations. In Proceedings of 5th Berkeley Symposium on Mathematical Statistics and Probability, (vol 1), University of California Press, (pp. 281-297).
    • MacQueen J. B. (1967). Some Methods for classification and Analysis of Multivariate Observations. In Proceedings of 5th Berkeley Symposium on Mathematical Statistics and Probability, (vol 1), University of California Press, (pp. 281-297).
  • 18
    • 1542576544 scopus 로고    scopus 로고
    • Phase-shift presaturation for water peak suppression in biomolecular NMR experiments, Science in China
    • COI: 1:CAS:528:DyaK2sXlslyksrw%3D
    • Mao, X., & Ye, C. (1997). Phase-shift presaturation for water peak suppression in biomolecular NMR experiments, Science in China. Series C, Life sciences, 40(4), 345–350.
    • (1997) Series C, Life sciences , vol.40 , Issue.4 , pp. 345-350
    • Mao, X.1    Ye, C.2
  • 19
    • 45449123048 scopus 로고
    • Baseline distortion in real-fourier-transform NMR spectra
    • Marion, D., & Bax, A. (1988). Baseline distortion in real-fourier-transform NMR spectra. Journal of Magnetic Resonance (1969), 79(2), 252–356.
    • (1988) Journal of Magnetic Resonance (1969) , vol.79 , Issue.2 , pp. 252-356
    • Marion, D.1    Bax, A.2
  • 22
    • 0036463681 scopus 로고    scopus 로고
    • Metabonomics: a generic platform for the study of drug toxicity and gene function
    • COI: 1:CAS:528:DC%2BD38Xhs1aksbw%3D, PID: 12120097
    • Nicholson, J., Connelly, J., Lindon, J. C., & Holmes, E. (2002). Metabonomics: a generic platform for the study of drug toxicity and gene function. Nature Reviews Drug Discovery, 1, 153–161.
    • (2002) Nature Reviews Drug Discovery , vol.1 , pp. 153-161
    • Nicholson, J.1    Connelly, J.2    Lindon, J.C.3    Holmes, E.4
  • 23
    • 34548316384 scopus 로고    scopus 로고
    • Combined use of association rules mining and clustering methods to find relevant links between binary rare attributes in a large data set
    • Plasse, M., Niang, N., Saporta, G., Villeminot, A., & Leblond, L. (2007). Combined use of association rules mining and clustering methods to find relevant links between binary rare attributes in a large data set. Computational Statistics and Data Analysis, 52(1), 596–613.
    • (2007) Computational Statistics and Data Analysis , vol.52 , Issue.1 , pp. 596-613
    • Plasse, M.1    Niang, N.2    Saporta, G.3    Villeminot, A.4    Leblond, L.5
  • 24
    • 84878425710 scopus 로고    scopus 로고
    • Optimization and practical implementation of ultrafast 2D NMR experiments
    • Queiroz Junior, L. H. K., Ferreira, A. G., & Giraudeau, P. (2013). Optimization and practical implementation of ultrafast 2D NMR experiments. Quimica Nova, 36(4), 577–581.
    • (2013) Quimica Nova , vol.36 , Issue.4 , pp. 577-581
    • Queiroz Junior, L.H.K.1    Ferreira, A.G.2    Giraudeau, P.3
  • 25
    • 79951726445 scopus 로고    scopus 로고
    • Standardization of factors that influence human urine metabolomics
    • COI: 1:CAS:528:DC%2BC3MXitVOnsrY%3D
    • Rasmussen, L. G., Savorani, F., Larsen, T. M., Dragsted, L. O., Astrup, A., & Engelsen, S. B. (2011). Standardization of factors that influence human urine metabolomics. Metabolomics, 7(1), 71–83.
    • (2011) Metabolomics , vol.7 , Issue.1 , pp. 71-83
    • Rasmussen, L.G.1    Savorani, F.2    Larsen, T.M.3    Dragsted, L.O.4    Astrup, A.5    Engelsen, S.B.6
  • 26
    • 84944281643 scopus 로고    scopus 로고
    • 1H-NMR spectroscopy, PhD Thesis, UCL, (2011).
    • 1H-NMR spectroscopy, PhD Thesis, UCL, http://hdl.handle.net/2078.1/75532 (2011).
  • 30
    • 78449302606 scopus 로고    scopus 로고
    • Fast multidimensional localized parallel NMR spectroscopy for the analysis of samples
    • COI: 1:CAS:528:DC%2BC3cXhtF2msLnJ, PID: 20661940
    • Vega-Vazquez, M., Cobas, J. C., & Martin-Pastor, M. (2010). Fast multidimensional localized parallel NMR spectroscopy for the analysis of samples. Magnetic Resonance in Chemistry, 48(10), 749–752.
    • (2010) Magnetic Resonance in Chemistry , vol.48 , Issue.10 , pp. 749-752
    • Vega-Vazquez, M.1    Cobas, J.C.2    Martin-Pastor, M.3
  • 31
    • 84944178665 scopus 로고
    • Hierarchical Grouping to optimize an objective function
    • Ward, J. H. (1963). Hierarchical Grouping to optimize an objective function. Journal of American Statistical Association, 58(301), 236–244.
    • (1963) Journal of American Statistical Association , vol.58 , Issue.301 , pp. 236-244
    • Ward, J.H.1
  • 32
    • 33846227380 scopus 로고    scopus 로고
    • Automated screening for metabolites in complex mixtures using 2D COSY NMR spectroscopy
    • Xi, Y., deRopp, J. S., Viant, M., Woodruff, D., & Yu, P. (2007). Automated screening for metabolites in complex mixtures using 2D COSY NMR spectroscopy. Metabolomics, 2(4), 221–233.
    • (2007) Metabolomics , vol.2 , Issue.4 , pp. 221-233
    • Xi, Y.1    deRopp, J.S.2    Viant, M.3    Woodruff, D.4    Yu, P.5
  • 33
    • 77956550520 scopus 로고    scopus 로고
    • MetPA: a web-based metabolomics tool for pathway analysis and visualization
    • COI: 1:CAS:528:DC%2BC3cXhtFGhu77I, PID: 20628077
    • Xia, J., & Wishart, D. (2010). MetPA: a web-based metabolomics tool for pathway analysis and visualization. Bioinformatics, 26(18), 2342–2344.
    • (2010) Bioinformatics , vol.26 , Issue.18 , pp. 2342-2344
    • Xia, J.1    Wishart, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.