The potential of circulating extracellular small RNAs (smexRNA) in veterinary diagnostics-Identifying biomarker signatures by multivariate data analysis

Biomolecular Detection and Quantification

Volumn 5, Issue , 2015, Pages 15-22

  Melanie, Spornraft ^a   Benedikt, Kirchner ^a   Pfaffl, Michael W ^a   Irmgard, Riedmaier ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

Biomarker signatures; Circulating small RNAs; Multivariate data analysis; Small RNA Sequencing; Transcriptomics; Veterinary diagnostics

Indexed keywords

BTA MICRORNA 122; BTA MICRORNA 140; BTA MICRORNA 192; BTA MICRORNA 193A 5P; BTA MICRORNA 320A; BTA MICRORNA 3600; BTA MICRORNA 423 3P; BTA MICRORNA 423 5P; BTA MICRORNA 486; BTA MICRORNA 92A; BTA MICRORNA 99A 5P; CLENBUTEROL; EXTRACELLULAR SMALL RNA; MICRORNA; PIWI INTERACTING RNA; PIWI INTERACTING RNA 31038; PIWI INTERACTING RNA 31068; PIWI INTERACTING RNA 33082; PIWI INTERACTING RNA 33151; PIWI INTERACTING RNA 35284; PIWI INTERACTING RNA 35982; PIWI INTERACTING RNA 36243; PIWI INTERACTING RNA 36255; PIWI INTERACTING RNA 36256; PIWI INTERACTING RNA 43771; PIWI INTERACTING RNA 43772; PIWI INTERACTING RNA 43786; PIWI INTERACTING RNA 60565; STEROID HORMONE; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

ANIMAL EXPERIMENT; ARTICLE; BLOOD SAMPLING; CALF (BOVINE); CONTROLLED STUDY; GENE EXPRESSION; GENE MAPPING; MALE; METABOLOMICS; MOLECULAR GENETICS; MULTIVARIATE ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEOMICS; RNA EXTRACTION; RNA SEQUENCE; TRANSCRIPTOMICS; VETERINARY CLINIC;

EID: 84943662356     PISSN: None     EISSN: 22147535     Source Type: Journal    
DOI: 10.1016/j.bdq.2015.08.001     Document Type: Article

References (32)

1. Premanandh J. Food Control 2013, 34:568-569.
2. Le Bizec B., Pinel G., Antignac J.P. J. Chromatogr. A 2009, 1216:8016-8034.
3. Riedmaier I., Pfaffl M.W. Methods 2013, 59:3-9.
4. In: R. Schilt (Ed.), Residues of veterinary drugs in food, Proceedings of the Euroresidue VII Conference, Egmond ann Zee, The Netherlands, 14-16 May, 2012, National Institute of Public Health and the Environment, Egmond aan Zee, 2012.
5. Regal P., Blokland M.H., Fente C.A., Sterk S.S., Cepeda A., van Ginkel Leen A. J. Agric. Food Chem. 2015, 63(1):370-378.
6. Dervilly-Pinel S., Weigel A., Lommen S., Chereau L., Rambaud M., Antignac J.P., Nielen, Michel W.F., Le Bizec B. Anal. Chim. Acta 2011, 700:144-154.
7. Barrey E., Triba M., Messier F., Le Moyec L. Equine Vet. J. 2014, 46:2-3.
8. Boyard-Kieken F., Dervilly-Pinel G., Garcia P., Paris A.C., Popot M.A., Le Bizec B., Bonnaire Y. J. Sep. Sci. 2011, 34:3493-3501.
9. Pfaffl M.W. Methods 2013, 59:1-2.
10. Price C., Chen J. Genes Dis. 2014, 1:53-63.
11. Schwarzenbach H., Nishida N., Calin G.A., Pantel K. Nat. Rev. Clin. Oncol. 2014, 11:145-156.
12. Becker C., Riedmaier I., Reiter M., Tichopad A., Pfaffl M.W., Meyer Heinrich H.D. Analyst 2011, 136:1204-1209.
13. Chim Stephen S.C., Shing Tristan K.F., Hung Emily C.W., Leung T.-Y., Lau T.K., Chiu Rossa W.K., Dennis Lo Y.M. Clin. Chem. 2008, 54:482-490.
14. Weber J.A., Baxter D.H., Zhang S., Huang D.Y., How Huang K., Jen Lee M., Galas D.J., Wang K. Clin. Chem. 2010, 56:1733-1741.
15. Gou L.T., Dai P., Liu M.F. Wiley Interdiscip. Rev. RNA 2014, 5:733-745.
16. Cui L., Lou Y., Zhang X., Zhou H., Deng H., Song H., Yu X., Xiao B., Wang W., Guo J. Clin. Biochem. 2011, 44:1050-1057.
17. Serratosa J., Blass A., Rigau B., Mongrell B., Rigau T., Tortadès M., Tolosa E., Aguilar C., Ribó O., Balagué J. Revue Scientifique Et Technique (Int. Off. Epizoot.) 2006, 25:637-653.
18. R.W. Stephany, Handbook of Experimental Pharmacology, 2010, 355-367.
19. Riedmaier I., Pfaffl M.W., Meyer Heinrich H.D. Drug Test Anal. 2011, 3:676-681.
20. Riedmaier I., Benes V., Blake J., Bretschneider N., Zinser C., Becker C., Meyer H.H.D., Pfaffl M.W. Anal. Chem. 2012, 84:6863-6868.
21. Riedmaier I., Spornraft M., Pfaffl M.W. Food additives & contaminants. Part A. Chem. Anal. Control Expos. Risk Assessment 2014, 31:641-649.
22. Eriksson L., Antti H., Gottfries J., Holmes E., Johansson E., Lindgren F., Long I., Lundstedt T., Trygg J., Wold S. Anal. Bioanal. Chem. 2004, 380:419-429.
23. Boccard J., Rutledge D.N. Anal. Chim. Acta 2013, 769:30-39.
24. Regal P., Anizan S., Antignac J.P., Le Bizec B., Cepeda A., Fente C. Anal. Chim. Acta 2011, 700:16-25.
25. Trygg J., Wold S. J. Chemometr. 2002, 16:119-128.
26. Wold S., Antti H., Lindgren F., Öhman J. Chemometr. Intell. Lab. Sys. 1998, 44:175-185.
27. Bylesjö M., Rantalainen M., Cloarec O., Nicholson J.K., Holmes E., Trygg J. J. Chemometr. 2006, 20:341-351.
28. User Guide to SIMCA By MKS Umetrics Version 13 downloaded from: 1992-2012 MKS Umetrics AB User guide edition date: April 23, 2012 AN MKS COMPANY MKS Umetrics AB Stortorget 21 SE-211 34 Malmö Sweden Phone: +46 (0)40 664 2580 Email:. http://info@umetrics.com.
29. Mitchell P.S., Parkin R.K., Kroh E.M., Fritz B.R., Wyman S.K., Pogosova-Agadjanyan E.L., Peterson A., Noteboom J., O'Briant K.C., Allen A., Lin D.W., Urban N., Drescher C.W., Knudsen B.S., Stirewalt D.L., Gentleman R., Vessella R.L., Nelson P.S., Martin D.B., Tewari M. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:10513-10518.
30. Spornraft M., Kirchner B., Haase B., Benes V., Pfaffl M.W., Riedmaier I. PLoS One 2014, 9:e107259.
31. Mortazavi A., Williams B.A., McCue K., Schaeffer L., Wold B. Nat. Methods 2008, 5:621-628.
32. Spornraft M., Kirchner B., Pfaffl M.W., Riedmaier I. Biotechnol. Lett. 2015, 37(June (6)):1165-1176. Epub 2015 February 21. 10.1007/s10529-015-1788-2.