-
1
-
-
84856736515
-
Genome sequencing reveals agronomically important loci in rice using MutMap
-
Abe, A., Kosugi, S., Yoshida, K.K., et al. (2012) Genome sequencing reveals agronomically important loci in rice using MutMap. Nat. Biotechnol. 30, 174-178.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 174-178
-
-
Abe, A.1
Kosugi, S.2
Yoshida, K.K.3
-
2
-
-
0030175185
-
The tomato Dwarf gene isolated by heterologous transposon tagging encodes the first member of a new cytochrome P450 family
-
Bishop, G.J., Harrison, K., and, Jones, J.D., (1996) The tomato Dwarf gene isolated by heterologous transposon tagging encodes the first member of a new cytochrome P450 family. Plant Cell, 8, 959-969.
-
(1996)
Plant Cell
, vol.8
, pp. 959-969
-
-
Bishop, G.J.1
Harrison, K.2
Jones, J.D.3
-
3
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A.M., Lohse, M., and, Usadel, B., (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
4
-
-
0003802206
-
Variations in anatomy, associations, and origins of Kranz tissue
-
Brown, W.V., (1975) Variations in anatomy, associations, and origins of Kranz tissue. Am. J. Bot. 62, 395-402.
-
(1975)
Am. J. Bot.
, vol.62
, pp. 395-402
-
-
Brown, W.V.1
-
5
-
-
4544253370
-
BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis
-
Caño-Delgado, A., Yin, Y., Yu, C., Vafeados, D., Mora-García, S., Cheng, J.-C., Nam, K.H., Li, J., and, Chory, J., (2004) BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis. Development, 131, 5341-5351.
-
(2004)
Development
, vol.131
, pp. 5341-5351
-
-
Caño-Delgado, A.1
Yin, Y.2
Yu, C.3
Vafeados, D.4
Mora-García, S.5
Cheng, J.-C.6
Nam, K.H.7
Li, J.8
Chory, J.9
-
7
-
-
84861544752
-
MergeAlign: Improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments
-
Collingridge, P.W., and, Kelly, S., (2012) MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments. BMC Bioinformatics, 13, 117.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 117
-
-
Collingridge, P.W.1
Kelly, S.2
-
9
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M.A., Banks, E., Poplin, R., et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498.
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
-
10
-
-
84903178904
-
Cracking the Kranz enigma with systems biology
-
Fouracre, J.P., Ando, S., and, Langdale, J.A., (2014) Cracking the Kranz enigma with systems biology. J. Exp. Bot. 65, 3327-3339.
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 3327-3339
-
-
Fouracre, J.P.1
Ando, S.2
Langdale, J.A.3
-
11
-
-
0001284013
-
Developmental genetics of mutants that specify knotted leaves in maize
-
Freeling, M., and, Hake, S., (1985) Developmental genetics of mutants that specify knotted leaves in maize. Genetics, 111, 617-634.
-
(1985)
Genetics
, vol.111
, pp. 617-634
-
-
Freeling, M.1
Hake, S.2
-
13
-
-
0000845599
-
Compartmentation and transport in C4 photosynthesis
-
(Huber, U. and Stockings, U. eds). Berlin/Heidelberg: Springer-Verlag
-
Hatch, M., and, Osmond, C., (1976) Compartmentation and transport in C4 photosynthesis. In Transport in Plants (, Huber, U., and, Stockings, U., eds). Berlin/Heidelberg: Springer-Verlag, pp. 145-184.
-
(1976)
Transport in Plants
, pp. 145-184
-
-
Hatch, M.1
Osmond, C.2
-
14
-
-
0000455404
-
Anatomical parameters for predicting photosynthetic pathways of grass leaves: The 'maximum lateral cell count' and the 'maximum cells distant count'
-
Hattersley, P.W., and, Watson, L., (1975) Anatomical parameters for predicting photosynthetic pathways of grass leaves: the 'maximum lateral cell count' and the 'maximum cells distant count'. Phytomorphology, 25, 325-333.
-
(1975)
Phytomorphology
, vol.25
, pp. 325-333
-
-
Hattersley, P.W.1
Watson, L.2
-
15
-
-
10744223755
-
A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450
-
Hong, Z., Ueguchi-Tanaka, M., Umemura, K., et al. (2003) A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450. Plant Cell, 15, 2900-2910.
-
(2003)
Plant Cell
, vol.15
, pp. 2900-2910
-
-
Hong, Z.1
Ueguchi-Tanaka, M.2
Umemura, K.3
-
16
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X., and, Madan, A., (1999) CAP3: a DNA sequence assembly program. Genome Res. 9, 868-877.
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
17
-
-
69449107449
-
Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles
-
Ibañes, M., Fàbregas, N., Chory, J., and, Caño-Delgado, A.I., (2009) Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. Proc. Natl Acad. Sci. USA, 106, 13630-13635.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 13630-13635
-
-
Ibañes, M.1
Fàbregas, N.2
Chory, J.3
Caño-Delgado, A.I.4
-
19
-
-
84874964884
-
Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
-
Kelly, S., Wickstead, B., and, Gull, K., (2011) Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes. Proc. Biol. Sci. 278, 1009-1018.
-
(2011)
Proc. Biol. Sci.
, vol.278
, pp. 1009-1018
-
-
Kelly, S.1
Wickstead, B.2
Gull, K.3
-
20
-
-
0032145507
-
The rotundifolia gene of Arabidopsis thaliana encodes a new member of the cytochrome P450 family that is required for the regulated polar elongation of leaf cells
-
Kim, G., Tsukaya, H., and, Uchimiya, H., (1998) The rotundifolia gene of Arabidopsis thaliana encodes a new member of the cytochrome P450 family that is required for the regulated polar elongation of leaf cells. Genes Dev. 12, 2381-2391.
-
(1998)
Genes Dev.
, vol.12
, pp. 2381-2391
-
-
Kim, G.1
Tsukaya, H.2
Uchimiya, H.3
-
21
-
-
14844313698
-
CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana
-
Kim, G.T., Fujioka, S., Kozuka, T., Tax, F.E., Takatsuto, S., Yoshida, S., and, Tsukaya, H., (2005) CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana. Plant J. 41, 710-721.
-
(2005)
Plant J.
, vol.41
, pp. 710-721
-
-
Kim, G.T.1
Fujioka, S.2
Kozuka, T.3
Tax, F.E.4
Takatsuto, S.5
Yoshida, S.6
Tsukaya, H.7
-
22
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B., and, Salzberg, S.L., (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
24
-
-
68549104404
-
The sequence alignment/map (SAM) format and SAMtools
-
1000 Genome Project Data Processing Subgroup.
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., and 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
25
-
-
77958036456
-
Involvement of brassinosteroid signals in the floral-induction network of Arabidopsis
-
Li, J., Li, Y., Chen, S., and, An, L., (2010) Involvement of brassinosteroid signals in the floral-induction network of Arabidopsis. J. Exp. Bot. 61, 4221-4230.
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 4221-4230
-
-
Li, J.1
Li, Y.2
Chen, S.3
An, L.4
-
26
-
-
84887056713
-
A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa)
-
Li, H., Jiang, L., Youn, J.H., et al. (2013) A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa). New Phytol. 200, 1076-1088.
-
(2013)
New Phytol.
, vol.200
, pp. 1076-1088
-
-
Li, H.1
Jiang, L.2
Youn, J.H.3
-
28
-
-
0001729828
-
4 metabolic phenotype
-
(Sage, R.F. and Monson, R.K. eds). Millbrae, CA: California Academic Press
-
4 metabolic phenotype. In C4 Plant Biology (, Sage, R.F., and, Monson, R.K., eds). Millbrae, CA: California Academic Press, pp. 377-410.
-
(1999)
C4 Plant Biology
, pp. 377-410
-
-
Monson, R.K.1
-
29
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
Murray, M., and, Thompson, W., (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8, 4321-4326.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 4321-4326
-
-
Murray, M.1
Thompson, W.2
-
30
-
-
79958071052
-
Functional analysis of corn husk photosynthesis
-
Pengelly, J.J.L., Kwasny, S., Bala, S., Evans, J.R., Voznesenskaya, E.V., Koteyeva, N.K., Edwards, G.E., Furbank, R.T., and, von Caemmerer, S., (2011) Functional analysis of corn husk photosynthesis. Plant Physiol. 156, 503-513.
-
(2011)
Plant Physiol.
, vol.156
, pp. 503-513
-
-
Pengelly, J.J.L.1
Kwasny, S.2
Bala, S.3
Evans, J.R.4
Voznesenskaya, E.V.5
Koteyeva, N.K.6
Edwards, G.E.7
Furbank, R.T.8
Von Caemmerer, S.9
-
31
-
-
67649327176
-
FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
-
Price, M.N., Dehal, P.S., and, Arkin, A.P., (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26, 1641-1650.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
32
-
-
84894875741
-
Shortening the breeding cycle of sorghum, a model crop for research
-
Rizal, G., Karki, S., Alcasid, M., Montecillo, F., Acebron, K., Larazo, N., Garcia, R., Slamet-Loedin, I.H., and, Quick, W.P., (2014) Shortening the breeding cycle of sorghum, a model crop for research. Crop Sci. 54, 520-529.
-
(2014)
Crop Sci.
, vol.54
, pp. 520-529
-
-
Rizal, G.1
Karki, S.2
Alcasid, M.3
Montecillo, F.4
Acebron, K.5
Larazo, N.6
Garcia, R.7
Slamet-Loedin, I.H.8
Quick, W.P.9
-
33
-
-
79958832047
-
The C4 plant lineages of planet Earth
-
Sage, R.F., Christin, P.-A., and, Edwards, E.J., (2011) The C4 plant lineages of planet Earth. J. Exp. Bot. 62, 3155-3169.
-
(2011)
J. Exp. Bot.
, vol.62
, pp. 3155-3169
-
-
Sage, R.F.1
Christin, P.-A.2
Edwards, E.J.3
-
34
-
-
84864196888
-
Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro
-
Sakamoto, T., Ohnishi, T., Fujioka, S., Watanabe, B., and, Mizutani, M., (2012) Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro. Plant Physiol. Biochem. 58, 220-226.
-
(2012)
Plant Physiol. Biochem.
, vol.58
, pp. 220-226
-
-
Sakamoto, T.1
Ohnishi, T.2
Fujioka, S.3
Watanabe, B.4
Mizutani, M.5
-
35
-
-
33645892291
-
Control of leaf vascular patterning by polar auxin transport
-
Scarpella, E., Marcos, D., Friml, J., and, Berleth, T., (2006) Control of leaf vascular patterning by polar auxin transport. Genes Dev. 20, 1015-1027.
-
(2006)
Genes Dev.
, vol.20
, pp. 1015-1027
-
-
Scarpella, E.1
Marcos, D.2
Friml, J.3
Berleth, T.4
-
36
-
-
0014572985
-
Distribution of enzymes in mesophyll and parenchyma-sheath chloroplasts of maize leaves in relation to the C4-dicarboxylic acid pathway of photosynthesis
-
Slack, C.R., Hatch, M.D., and, Goodchild, D.J., (1969) Distribution of enzymes in mesophyll and parenchyma-sheath chloroplasts of maize leaves in relation to the C4-dicarboxylic acid pathway of photosynthesis. Biochem. J. 114, 489-498.
-
(1969)
Biochem. J.
, vol.114
, pp. 489-498
-
-
Slack, C.R.1
Hatch, M.D.2
Goodchild, D.J.3
-
37
-
-
84870799409
-
Scarecrow plays a role in establishing Kranz anatomy in maize leaves
-
Slewinski, T.L., Anderson, A.A., Zhang, C., and, Turgeon, R., (2012) Scarecrow plays a role in establishing Kranz anatomy in maize leaves. Plant Cell Physiol. 53, 2030-2037.
-
(2012)
Plant Cell Physiol.
, vol.53
, pp. 2030-2037
-
-
Slewinski, T.L.1
Anderson, A.A.2
Zhang, C.3
Turgeon, R.4
-
38
-
-
84906241924
-
Short-Root1 plays a role in the development of vascular tissue and Kranz anatomy in maize leaves
-
Slewinski, T.L., Anderson, A.A., Price, S., Withee, J.R., Gallagher, K., and, Turgeon, R., (2014) Short-Root1 plays a role in the development of vascular tissue and Kranz anatomy in maize leaves. Mol. Plant, 7, 1388-1392.
-
(2014)
Mol. Plant
, vol.7
, pp. 1388-1392
-
-
Slewinski, T.L.1
Anderson, A.A.2
Price, S.3
Withee, J.R.4
Gallagher, K.5
Turgeon, R.6
-
39
-
-
40549109271
-
Generalised additive models for location scale and shape (GAMLSS) in R
-
Stasinopoulos, D.M., and, Rigby, R.A., (2007) Generalised additive models for location scale and shape (GAMLSS) in R. J. Stat. Soft. 23, 1-46.
-
(2007)
J. Stat. Soft.
, vol.23
, pp. 1-46
-
-
Stasinopoulos, D.M.1
Rigby, R.A.2
-
40
-
-
15844377600
-
Brassinosteroids rescue the deficiency of CYP90, a cytochrome P450, controlling cell elongation and de-etiolation in Arabidopsis
-
Szekeres, M., Németh, K., Koncz-Kálmán, Z., et al. (1996) Brassinosteroids rescue the deficiency of CYP90, a cytochrome P450, controlling cell elongation and de-etiolation in Arabidopsis. Cell, 85, 171-182.
-
(1996)
Cell
, vol.85
, pp. 171-182
-
-
Szekeres, M.1
Németh, K.2
Koncz-Kálmán, Z.3
-
41
-
-
0033396785
-
Disruption of auxin transport is associated with aberrant leaf development in maize
-
Tsiantis, M., Brown, M.I.N., Skibinski, G., and, Langdale, J.A., (1999) Disruption of auxin transport is associated with aberrant leaf development in maize. Plant Physiol. 121, 1163-1168.
-
(1999)
Plant Physiol.
, vol.121
, pp. 1163-1168
-
-
Tsiantis, M.1
Brown, M.I.N.2
Skibinski, G.3
Langdale, J.A.4
-
42
-
-
84908256901
-
Genome-wide study of KNOX regulatory network reveals brassinosteroid catabolic genes important for shoot meristem function in rice
-
Tsuda, K., Kurata, N., Ohyanagi, H., and, Hake, S., (2014) Genome-wide study of KNOX regulatory network reveals brassinosteroid catabolic genes important for shoot meristem function in rice. Plant Cell, 26, 3488-3500.
-
(2014)
Plant Cell
, vol.26
, pp. 3488-3500
-
-
Tsuda, K.1
Kurata, N.2
Ohyanagi, H.3
Hake, S.4
-
43
-
-
84865022311
-
Primer3 - New capabilities and interfaces
-
Untergasser, A., Cutcutache, I., Koressaar, T., Ye, J., Faircloth, B.C., Remm, M., and, Rozen, S.G., (2012) Primer3-new capabilities and interfaces. Nucleic Acids Res. 40, e115.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. e115
-
-
Untergasser, A.1
Cutcutache, I.2
Koressaar, T.3
Ye, J.4
Faircloth, B.C.5
Remm, M.6
Rozen, S.G.7
-
44
-
-
0035969538
-
Kranz anatomy is not essential for terrestrial C4 plant photosynthesis
-
Voznesenskaya, E.V., Franceschi, V.R., Kiirats, O., Freitag, H., and, Edwards, G.E., (2001) Kranz anatomy is not essential for terrestrial C4 plant photosynthesis. Nature, 414, 543-546.
-
(2001)
Nature
, vol.414
, pp. 543-546
-
-
Voznesenskaya, E.V.1
Franceschi, V.R.2
Kiirats, O.3
Freitag, H.4
Edwards, G.E.5
-
45
-
-
84914689868
-
Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement
-
Walker, B.J., Abeel, T., Shea, T., et al. (2014) Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS ONE, 9, e112963.
-
(2014)
PLoS ONE
, vol.9
, pp. e112963
-
-
Walker, B.J.1
Abeel, T.2
Shea, T.3
-
47
-
-
84871279647
-
Brassinosteroid production and signaling differentially control cell division and expansion in the leaf
-
Zhiponova, M.K., Vanhoutte, I., Boudolf, V., et al. (2013) Brassinosteroid production and signaling differentially control cell division and expansion in the leaf. New Phytol. 197, 490-502.
-
(2013)
New Phytol.
, vol.197
, pp. 490-502
-
-
Zhiponova, M.K.1
Vanhoutte, I.2
Boudolf, V.3
|