메뉴 건너뛰기




Volumn 65, Issue 1, 2015, Pages 331-338

Community structure changes in sediment bacterial communities along an organic enrichment gradient associated with fish farming

Author keywords

Bacterial community structure; Fish farming; Marine sediment; Organic pollution

Indexed keywords


EID: 84943589375     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-014-0865-4     Document Type: Article
Times cited : (25)

References (40)
  • 1
    • 77952428653 scopus 로고    scopus 로고
    • Degrading seagrass (Posidonia oceanica) ecosystems: a source of dissolved matter in the Mediterranean
    • COI: 1:CAS:528:DC%2BC3cXmtVyksr0%3D
    • Apostolaki ET, Holmer M, Marbà N, Karakassis I (2010) Degrading seagrass (Posidonia oceanica) ecosystems: a source of dissolved matter in the Mediterranean. Hydrobiologia 649(1):13–23
    • (2010) Hydrobiologia , vol.649 , Issue.1 , pp. 13-23
    • Apostolaki, E.T.1    Holmer, M.2    Marbà, N.3    Karakassis, I.4
  • 2
    • 20444376852 scopus 로고    scopus 로고
    • Accelerated sulfur cycle in coastal marine sediment beneath areas of intensive shellfish aquaculture
    • COI: 1:CAS:528:DC%2BD2MXlt1Okt70%3D, PID: 15932986
    • Asami H, Aida M, Watanabe K (2005) Accelerated sulfur cycle in coastal marine sediment beneath areas of intensive shellfish aquaculture. Appl Environ Microbiol 71(6):2925–2933
    • (2005) Appl Environ Microbiol , vol.71 , Issue.6 , pp. 2925-2933
    • Asami, H.1    Aida, M.2    Watanabe, K.3
  • 3
    • 33644951344 scopus 로고    scopus 로고
    • Bacterial diversity in organically-enriched fish farm sediments
    • COI: 1:CAS:528:DC%2BD28XhvFKrtrw%3D, PID: 16420614
    • Bissett A, Bowman J, Burke C (2006) Bacterial diversity in organically-enriched fish farm sediments. FEMS Microbiol Ecol 55(1):48–56
    • (2006) FEMS Microbiol Ecol , vol.55 , Issue.1 , pp. 48-56
    • Bissett, A.1    Bowman, J.2    Burke, C.3
  • 4
    • 33846097739 scopus 로고    scopus 로고
    • Bacterial community shifts in organically perturbed sediments
    • COI: 1:CAS:528:DC%2BD2sXis1SltL0%3D, PID: 17227411
    • Bissett A, Burke C, Cook PLM, Bowman JP (2007) Bacterial community shifts in organically perturbed sediments. Environ Microbiol 9(1):46–60
    • (2007) Environ Microbiol , vol.9 , Issue.1 , pp. 46-60
    • Bissett, A.1    Burke, C.2    Cook, P.L.M.3    Bowman, J.P.4
  • 5
    • 45949115953 scopus 로고
    • The effect of salmon farming on the benthos of a Scottish sea loch
    • Brown JR, Gowen RJ, McLusky DS (1987) The effect of salmon farming on the benthos of a Scottish sea loch. J Exp Mar Biol Ecol 109(1):39–51
    • (1987) J Exp Mar Biol Ecol , vol.109 , Issue.1 , pp. 39-51
    • Brown, J.R.1    Gowen, R.J.2    McLusky, D.S.3
  • 6
    • 33646827488 scopus 로고    scopus 로고
    • The versatile ε-proteobacteria: key players in sulphidic habitats
    • COI: 1:CAS:528:DC%2BD28Xks1Oru7o%3D, PID: 16652138
    • Campbell BJ, Engel AS, Porter ML, Takai K (2006) The versatile ε-proteobacteria: key players in sulphidic habitats. Nat Rev Microbiol 4(6):458–468
    • (2006) Nat Rev Microbiol , vol.4 , Issue.6 , pp. 458-468
    • Campbell, B.J.1    Engel, A.S.2    Porter, M.L.3    Takai, K.4
  • 7
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18(1):117–143
    • (1993) Aust J Ecol , vol.18 , Issue.1 , pp. 117-143
    • Clarke, K.R.1
  • 8
    • 0032434042 scopus 로고    scopus 로고
    • A taxonomic distinctness index and its statistical properties
    • Clarke KR, Warwick RM (1998) A taxonomic distinctness index and its statistical properties. J Appl Ecol 35(4):523–531
    • (1998) J Appl Ecol , vol.35 , Issue.4 , pp. 523-531
    • Clarke, K.R.1    Warwick, R.M.2
  • 9
    • 0027790373 scopus 로고
    • Deep-sea smokers: windows to a subsurface biosphere?
    • COI: 1:CAS:528:DyaK3sXmtVOnsbw%3D, PID: 11538298
    • Deming JW, Baross JA (1993) Deep-sea smokers: windows to a subsurface biosphere? Geochim Cosmochim Acta 57(14):3219–3230
    • (1993) Geochim Cosmochim Acta , vol.57 , Issue.14 , pp. 3219-3230
    • Deming, J.W.1    Baross, J.A.2
  • 10
    • 0141704589 scopus 로고    scopus 로고
    • Filamentous “Epsilonproteobacteria” dominate microbial mats from sulfidic cave springs
    • COI: 1:CAS:528:DC%2BD3sXntlSisrs%3D, PID: 12957939
    • Engel AS, Lee N, Porter ML, Stern LA, Bennett PC, Wagner M (2003) Filamentous “Epsilonproteobacteria” dominate microbial mats from sulfidic cave springs. Appl Environ Microbiol 69(9):5503–5511
    • (2003) Appl Environ Microbiol , vol.69 , Issue.9 , pp. 5503-5511
    • Engel, A.S.1    Lee, N.2    Porter, M.L.3    Stern, L.A.4    Bennett, P.C.5    Wagner, M.6
  • 11
    • 10644225888 scopus 로고    scopus 로고
    • Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic “Epsilonproteobacteria
    • COI: 1:CAS:528:DC%2BD2cXhtVyqs7bK, PID: 16329854
    • Engel AS, Porter ML, Stern LA, Quinlan S, Bennett PC (2004) Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic “Epsilonproteobacteria”. FEMS Microbiol Ecol 51(1):31–53
    • (2004) FEMS Microbiol Ecol , vol.51 , Issue.1 , pp. 31-53
    • Engel, A.S.1    Porter, M.L.2    Stern, L.A.3    Quinlan, S.4    Bennett, P.C.5
  • 12
    • 0028888117 scopus 로고
    • Environmental impact of salmon net-pen culture on marine benthic communities in Maine: a case study
    • COI: 1:CAS:528:DyaK2MXotFGmsrs%3D
    • Findlay RH, Watling L, Mayer LM (1995) Environmental impact of salmon net-pen culture on marine benthic communities in Maine: a case study. Estuaries 18(1):145–179
    • (1995) Estuaries , vol.18 , Issue.1 , pp. 145-179
    • Findlay, R.H.1    Watling, L.2    Mayer, L.M.3
  • 13
    • 0036272385 scopus 로고    scopus 로고
    • Biological responses to seasonally varying fluxes of organic matter to the ocean floor: a review
    • COI: 1:CAS:528:DC%2BD38XjtlSqtr0%3D
    • Gooday AJ (2002) Biological responses to seasonally varying fluxes of organic matter to the ocean floor: a review. J Oceanogr 58(2):305–332
    • (2002) J Oceanogr , vol.58 , Issue.2 , pp. 305-332
    • Gooday, A.J.1
  • 14
    • 0027847824 scopus 로고
    • Seasonal changes in benthic fluxes of dissolved oxygen and ammonium associated with marine cultured Atlantic salmon
    • Hargrave BT, Duplisea DE, Pfeiffer E, Wildish DJ (1993) Seasonal changes in benthic fluxes of dissolved oxygen and ammonium associated with marine cultured Atlantic salmon. Mar Ecol Prog Ser 96(3):249–257
    • (1993) Mar Ecol Prog Ser , vol.96 , Issue.3 , pp. 249-257
    • Hargrave, B.T.1    Duplisea, D.E.2    Pfeiffer, E.3    Wildish, D.J.4
  • 16
    • 0032510064 scopus 로고    scopus 로고
    • Seasonal variability in sediment profiles beneath fish farm cages in the Mediterranean
    • Karakassis I, Tsapakis M, Hatziyanni E (1998) Seasonal variability in sediment profiles beneath fish farm cages in the Mediterranean. Mar Ecol Prog Ser 162:243–252
    • (1998) Mar Ecol Prog Ser , vol.162 , pp. 243-252
    • Karakassis, I.1    Tsapakis, M.2    Hatziyanni, E.3
  • 17
    • 0033612706 scopus 로고    scopus 로고
    • Benthic recovery following cessation of fish farming: a series of successes and catastrophes
    • Karakassis I, Hatziyanni E, Tsapakis M, Plaiti W (1999) Benthic recovery following cessation of fish farming: a series of successes and catastrophes. Mar Ecol Prog Ser 184:205–218
    • (1999) Mar Ecol Prog Ser , vol.184 , pp. 205-218
    • Karakassis, I.1    Hatziyanni, E.2    Tsapakis, M.3    Plaiti, W.4
  • 18
  • 19
    • 58049202848 scopus 로고    scopus 로고
    • Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient
    • COI: 1:CAS:528:DC%2BD1MXhsVyntA%3D%3D
    • Kawahara N, Shigematsu K, Miyadai T, Kondo R (2009) Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient. Aquaculture 287(1–2):107–113
    • (2009) Aquaculture , vol.287 , Issue.1-2 , pp. 107-113
    • Kawahara, N.1    Shigematsu, K.2    Miyadai, T.3    Kondo, R.4
  • 20
    • 84862644381 scopus 로고    scopus 로고
    • Comparison of sulphate-reducing bacterial communities in Japanese fish farm sediments with different levels of organic enrichment
    • PID: 22791053
    • Kondo R, Mori Y, Sakami T (2012) Comparison of sulphate-reducing bacterial communities in Japanese fish farm sediments with different levels of organic enrichment. Microbes Environ 27(2):193–199. doi:10.1264/jsme2.ME11278
    • (2012) Microbes Environ , vol.27 , Issue.2 , pp. 193-199
    • Kondo, R.1    Mori, Y.2    Sakami, T.3
  • 21
    • 28444493324 scopus 로고    scopus 로고
    • Cost/benefit analysis of a benthic monitoring programme of organic benthic enrichment using different sampling and analysis methods
    • COI: 1:CAS:528:DC%2BD2MXht1Ohsr3L, PID: 16040056
    • Lampadariou N, Karakassis I, Pearson TH (2005) Cost/benefit analysis of a benthic monitoring programme of organic benthic enrichment using different sampling and analysis methods. Mar Pollut Bull 50(12):1606–1618
    • (2005) Mar Pollut Bull , vol.50 , Issue.12 , pp. 1606-1618
    • Lampadariou, N.1    Karakassis, I.2    Pearson, T.H.3
  • 22
    • 84885926259 scopus 로고    scopus 로고
    • Impacts of mariculture on the diversity of bacterial communities within intertidal sediments in the Northeast of China
    • PID: 23963221
    • Li J, Li F, Yu S, Qin S, Wang G (2013) Impacts of mariculture on the diversity of bacterial communities within intertidal sediments in the Northeast of China. Microb Ecol 66(4):861–870. doi:10.1007/s00248-013-0272-6
    • (2013) Microb Ecol , vol.66 , Issue.4 , pp. 861-870
    • Li, J.1    Li, F.2    Yu, S.3    Qin, S.4    Wang, G.5
  • 24
    • 0032954211 scopus 로고    scopus 로고
    • Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments
    • COI: 1:CAS:528:DyaK1MXjvVygtA%3D%3D, PID: 9872782
    • McCaig AE, Phillips CJ, Stephen JR, Kowalchuk GA, Martyn Harvey S, Herbert RA, Martin Embley T, Prosser JI (1999) Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments. Appl Environ Microbiol 65(1):213–220
    • (1999) Appl Environ Microbiol , vol.65 , Issue.1 , pp. 213-220
    • McCaig, A.E.1    Phillips, C.J.2    Stephen, J.R.3    Kowalchuk, G.A.4    Martyn Harvey, S.5    Herbert, R.A.6    Martin Embley, T.7    Prosser, J.I.8
  • 25
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • COI: 1:CAS:528:DyaK1cXjsVaqtbs%3D
    • Muyzer G, Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Anton Leeuw Int J Gen Mol Microbiol 73(1):127–141
    • (1998) Anton Leeuw Int J Gen Mol Microbiol , vol.73 , Issue.1 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 26
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • COI: 1:CAS:528:DyaK3sXit1Kktrk%3D, PID: 7683183
    • Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59(3):695–700
    • (1993) Appl Environ Microbiol , vol.59 , Issue.3 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 27
    • 77952674604 scopus 로고    scopus 로고
    • Effects of fish farming on the biological and geochemical properties of muddy and sandy sediments in the Mediterranean Sea
    • COI: 1:CAS:528:DC%2BC3cXlvVaqtbg%3D, PID: 20085847
    • Papageorgiou N, Kalantzi I, Karakassis I (2010) Effects of fish farming on the biological and geochemical properties of muddy and sandy sediments in the Mediterranean Sea. Mar Environ Res 69(5):326–336
    • (2010) Mar Environ Res , vol.69 , Issue.5 , pp. 326-336
    • Papageorgiou, N.1    Kalantzi, I.2    Karakassis, I.3
  • 28
    • 0029124948 scopus 로고
    • Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site
    • COI: 1:CAS:528:DyaK2MXntlKmtrw%3D, PID: 7543678
    • Polz MF, Cavanaugh CM (1995) Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc Natl Acad Sci 92(16):7232–7236
    • (1995) Proc Natl Acad Sci , vol.92 , Issue.16 , pp. 7232-7236
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 29
    • 0038107873 scopus 로고    scopus 로고
    • Microbial community variation in pristine and polluted nearshore Antarctic sediments
    • COI: 1:CAS:528:DC%2BD3sXlsVaju7o%3D, PID: 19719624
    • Powell SM, Bowman JP, Snape I, Stark JS (2003) Microbial community variation in pristine and polluted nearshore Antarctic sediments. FEMS Microbiol Ecol 45(2):135–145
    • (2003) FEMS Microbiol Ecol , vol.45 , Issue.2 , pp. 135-145
    • Powell, S.M.1    Bowman, J.P.2    Snape, I.3    Stark, J.S.4
  • 30
    • 34648816563 scopus 로고    scopus 로고
    • Comparison of different denaturing gradient gel electrophoresis primer sets for the study of marine bacterioplankton communities
    • PID: 17660308
    • Sánchez O, Gasol JM, Massana R, Mas J, Pedrós-Alió C (2007) Comparison of different denaturing gradient gel electrophoresis primer sets for the study of marine bacterioplankton communities. Appl Environ Microbiol 73(18):5962–5967
    • (2007) Appl Environ Microbiol , vol.73 , Issue.18 , pp. 5962-5967
    • Sánchez, O.1    Gasol, J.M.2    Massana, R.3    Mas, J.4    Pedrós-Alió, C.5
  • 31
    • 84865788196 scopus 로고    scopus 로고
    • Bacterioplankton groups involved in the uptake of phosphate and dissolved organic phosphorus in a mesocosm experiment with P-starved Mediterranean waters
    • COI: 1:CAS:528:DC%2BC38Xht1ylsLrP, PID: 22564346
    • Sebastian M, Pitta P, Gonzalez JM, Thingstad TF, Gasol JM (2012) Bacterioplankton groups involved in the uptake of phosphate and dissolved organic phosphorus in a mesocosm experiment with P-starved Mediterranean waters. Environ Microbiol 14(9):2334–2347. doi:10.1111/j.1462-2920.2012.02772.x
    • (2012) Environ Microbiol , vol.14 , Issue.9 , pp. 2334-2347
    • Sebastian, M.1    Pitta, P.2    Gonzalez, J.M.3    Thingstad, T.F.4    Gasol, J.M.5
  • 32
    • 79952073190 scopus 로고    scopus 로고
    • Differences in bacterial community composition in Baltic Sea sediment in response to fish farming
    • Tamminen M, Karkman A, Corander J, Paulin L, Virta M (2011) Differences in bacterial community composition in Baltic Sea sediment in response to fish farming. Aquaculture 313(1–4):15–23. doi:10.1016/j.aquaculture.2011.01.020
    • (2011) Aquaculture , vol.313 , Issue.1-4 , pp. 15-23
    • Tamminen, M.1    Karkman, A.2    Corander, J.3    Paulin, L.4    Virta, M.5
  • 33
    • 79953220476 scopus 로고    scopus 로고
    • Changes in bacterioplankton and phytoplankton community composition in response to nutrient additions in coastal waters off the NW Iberian Peninsula
    • COI: 1:CAS:528:DC%2BC3MXms1Snt7Y%3D
    • Teira E, Martínez-García S, Carreira C, Morán XAG (2011) Changes in bacterioplankton and phytoplankton community composition in response to nutrient additions in coastal waters off the NW Iberian Peninsula. Mar Ecol Prog Ser 426:87–104. doi:10.3354/meps09008
    • (2011) Mar Ecol Prog Ser , vol.426 , pp. 87-104
    • Teira, E.1    Martínez-García, S.2    Carreira, C.3    Morán, X.A.G.4
  • 35
    • 0030497690 scopus 로고    scopus 로고
    • Total bacterial diversity in soil and sediment communities—A review
    • COI: 1:CAS:528:DyaK2sXltFOksQ%3D%3D
    • Torsvik V, Sørheim R, Goksøyr J (1996) Total bacterial diversity in soil and sediment communities—A review. J Ind Microbiol Biotechnol 17(3–4):170–178
    • (1996) J Ind Microbiol Biotechnol , vol.17 , Issue.3-4 , pp. 170-178
    • Torsvik, V.1    Sørheim, R.2    Goksøyr, J.3
  • 36
    • 0036968290 scopus 로고    scopus 로고
    • Bacterial community structure and activity in fish farm sediments of the Ligurian Sea (Western Mediterranean)
    • COI: 1:CAS:528:DC%2BD38Xpt1CisLc%3D
    • Vezzulli L, Chelossi E, Riccardi G, Fabiano M (2002) Bacterial community structure and activity in fish farm sediments of the Ligurian Sea (Western Mediterranean). Aquac Int 10(2):123–141
    • (2002) Aquac Int , vol.10 , Issue.2 , pp. 123-141
    • Vezzulli, L.1    Chelossi, E.2    Riccardi, G.3    Fabiano, M.4
  • 37
    • 33746716094 scopus 로고    scopus 로고
    • Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
    • COI: 1:CAS:528:DC%2BD28XhtVOmtrfJ, PID: 16958909
    • Webster G, John Parkes R, Cragg BA, Newberry CJ, Weightman AJ, Fry JC (2006) Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol Ecol 58(1):65–85
    • (2006) FEMS Microbiol Ecol , vol.58 , Issue.1 , pp. 65-85
    • Webster, G.1    John Parkes, R.2    Cragg, B.A.3    Newberry, C.J.4    Weightman, A.J.5    Fry, J.C.6
  • 38
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • COI: 1:CAS:528:DyaK3MXhsl2lurY%3D, PID: 1987160
    • Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173(2):697–703
    • (1991) J Bacteriol , vol.173 , Issue.2 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 39
    • 0034976587 scopus 로고    scopus 로고
    • Cost-effective monitoring of organic enrichment resulting from salmon mariculture
    • COI: 1:CAS:528:DC%2BD3MXmvV2qtbw%3D
    • Wildish DJ, Hargrave BT, Pohle G (2001) Cost-effective monitoring of organic enrichment resulting from salmon mariculture. ICES J Mar Sci 58(2):469–476
    • (2001) ICES J Mar Sci , vol.58 , Issue.2 , pp. 469-476
    • Wildish, D.J.1    Hargrave, B.T.2    Pohle, G.3
  • 40
    • 37649011443 scopus 로고    scopus 로고
    • Microbial diversity in polluted harbor sediments I: bacterial community assessment based on four clone libraries of 16S rDNA
    • Zhang W, Ki JS, Qian PY (2008) Microbial diversity in polluted harbor sediments I: bacterial community assessment based on four clone libraries of 16S rDNA. Estuar Coast Shelf Sci 76(3):668–681
    • (2008) Estuar Coast Shelf Sci , vol.76 , Issue.3 , pp. 668-681
    • Zhang, W.1    Ki, J.S.2    Qian, P.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.