-
1
-
-
0032493119
-
Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction
-
Arnosti C., Jørgensen B.B., Sagemann J., and Thamdrup B. Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction. Mar. Ecol. Prog. Ser. 165 (1998) 59-70
-
(1998)
Mar. Ecol. Prog. Ser.
, vol.165
, pp. 59-70
-
-
Arnosti, C.1
Jørgensen, B.B.2
Sagemann, J.3
Thamdrup, B.4
-
2
-
-
20444376852
-
Accelerated sulfur cycle in coastal marine sediment beneath areas of intensive shellfish aquaculture
-
Asami H., Aida M., and Watannabe K. Accelerated sulfur cycle in coastal marine sediment beneath areas of intensive shellfish aquaculture. Appl. Environ. Microbiol. 71 (2005) 2925-2933
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2925-2933
-
-
Asami, H.1
Aida, M.2
Watannabe, K.3
-
3
-
-
33644951344
-
Bacterial diversity in organically-enriched fish farm sediments
-
Bissett A., Bowman J., and Burke C. Bacterial diversity in organically-enriched fish farm sediments. FEMS Microbiol. Ecol. 55 (2006) 48-56
-
(2006)
FEMS Microbiol. Ecol.
, vol.55
, pp. 48-56
-
-
Bissett, A.1
Bowman, J.2
Burke, C.3
-
4
-
-
0038369933
-
Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
-
Bowman J.P., and McCuaig R.D. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl. Environ. Microbiol. 69 (2003) 2463-2483
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2463-2483
-
-
Bowman, J.P.1
McCuaig, R.D.2
-
5
-
-
0037693813
-
Prokaryotic metabolic activity and community structure in Antarctic continental shelf sediments
-
Bowman J.P., McCammon S.A., Gibson J.A.E., Robertson L., and Nichols P.D. Prokaryotic metabolic activity and community structure in Antarctic continental shelf sediments. Appl. Environ. Microbiol. 69 (2003) 2448-2462
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2448-2462
-
-
Bowman, J.P.1
McCammon, S.A.2
Gibson, J.A.E.3
Robertson, L.4
Nichols, P.D.5
-
7
-
-
0037251969
-
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole J.R., Chai B., Marsh T.L., Farris R.J., Wang Q., Kulam S.A., Chandra S., McGarrell D.M., Schmidt T.M., Garrity G.M., and Tiedje J.M. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31 (2003) 442-443
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
McGarrell, D.M.8
Schmidt, T.M.9
Garrity, G.M.10
Tiedje, J.M.11
-
9
-
-
0141704589
-
Filamentous "epsilonproteobacteria" dominate microbial mats from sulfidic cave springs
-
Engel A.S., Lee N., Porter M.L., Stern L.A., Bennett P.C., and Wagner M. Filamentous "epsilonproteobacteria" dominate microbial mats from sulfidic cave springs. Appl. Environ. Microbiol 69 (2003) 5503-5511
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 5503-5511
-
-
Engel, A.S.1
Lee, N.2
Porter, M.L.3
Stern, L.A.4
Bennett, P.C.5
Wagner, M.6
-
10
-
-
10644225888
-
Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic "Epsilonproteobacteria."
-
Engel A.S., Porter M.L., Stern L.A., Quinlan S., and Bennett P.C. Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic "Epsilonproteobacteria.". FEMS Microbiol. Ecol. 51 (2004) 31-53
-
(2004)
FEMS Microbiol. Ecol.
, vol.51
, pp. 31-53
-
-
Engel, A.S.1
Porter, M.L.2
Stern, L.A.3
Quinlan, S.4
Bennett, P.C.5
-
11
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
0242533619
-
Phylum VIII. Nitrospirae phy, nov.
-
Boone D.R., and Castenholz R.W. (Eds), Springer, NY
-
Garrity G.M., and Holt J.G. Phylum VIII. Nitrospirae phy, nov. In: Boone D.R., and Castenholz R.W. (Eds). Bergey's manual of systematic bacteriology. 2nd ed. vol. 1 (2001), Springer, NY 451-464
-
(2001)
Bergey's manual of systematic bacteriology. 2nd ed.
, vol.1
, pp. 451-464
-
-
Garrity, G.M.1
Holt, J.G.2
-
13
-
-
0029660135
-
Phylogenetic analysis of the bacterial communities in marine sediments
-
Grey J.P., and Herwig R.P. Phylogenetic analysis of the bacterial communities in marine sediments. Appl. Environ. Microbiol. 62 (1996) 4049-4059
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4049-4059
-
-
Grey, J.P.1
Herwig, R.P.2
-
14
-
-
0000917309
-
Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size
-
Heck Jr. K.L., Van Bella G., and Simberloff D. Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56 (1975) 1459-1461
-
(1975)
Ecology
, vol.56
, pp. 1459-1461
-
-
Heck Jr., K.L.1
Van Bella, G.2
Simberloff, D.3
-
15
-
-
0029668414
-
Seasonality of sulfate reduction and pore water solutes in a marine fish farm sediment: the importance of temperature and sedimentary organic matter
-
Holmer M., and Kristensen E. Seasonality of sulfate reduction and pore water solutes in a marine fish farm sediment: the importance of temperature and sedimentary organic matter. Biogeochemistry 32 (1996) 13-39
-
(1996)
Biogeochemistry
, vol.32
, pp. 13-39
-
-
Holmer, M.1
Kristensen, E.2
-
16
-
-
33646772105
-
Changes in microbial communities associated with the conditioning of filter material in recirculating aquaculture systems of the pufferfish Takifugu rubripes
-
Itoi S., Niki A., and Sugita H. Changes in microbial communities associated with the conditioning of filter material in recirculating aquaculture systems of the pufferfish Takifugu rubripes. Aquaculture 256 (2006) 287-295
-
(2006)
Aquaculture
, vol.256
, pp. 287-295
-
-
Itoi, S.1
Niki, A.2
Sugita, H.3
-
17
-
-
5444228838
-
Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov., and Psychromonadaceae fam. nov
-
Ivanova E.P., Flavier S., and Christen R. Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov., and Psychromonadaceae fam. nov. Int. J. Syst. Evol. Microbiol. 54 (2004) 1773-1788
-
(2004)
Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 1773-1788
-
-
Ivanova, E.P.1
Flavier, S.2
Christen, R.3
-
19
-
-
0027374388
-
Inhibition of ammonia oxidation in Nitrosomonas europaea by sulfur compounds: thioethers are oxidized to sulfoxides by ammonia monooxygenase
-
Juliette L.Y., Hyman M.R., and Arp D.J. Inhibition of ammonia oxidation in Nitrosomonas europaea by sulfur compounds: thioethers are oxidized to sulfoxides by ammonia monooxygenase. Appl. Environ. Microbiol. 59 (1993) 3718-3727
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3718-3727
-
-
Juliette, L.Y.1
Hyman, M.R.2
Arp, D.J.3
-
20
-
-
41749100580
-
Distribution of sulfate-reducing bacteria in fish farm sediments on the coast of southern Fukui Prefecture, Japan
-
Kawahara N., Shigematsu K., Miura S., Miyadai T., and Kondo R. Distribution of sulfate-reducing bacteria in fish farm sediments on the coast of southern Fukui Prefecture, Japan. Plankton Benthos Res. 3 (2008) 42-45
-
(2008)
Plankton Benthos Res.
, vol.3
, pp. 42-45
-
-
Kawahara, N.1
Shigematsu, K.2
Miura, S.3
Miyadai, T.4
Kondo, R.5
-
21
-
-
0028200507
-
Transformations of aromatic compounds by Nitrosomonas europaea
-
Keener W.K., and Arp D.J. Transformations of aromatic compounds by Nitrosomonas europaea. Appl. Environ. Microbiol. 60 (1994) 1914-1920
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 1914-1920
-
-
Keener, W.K.1
Arp, D.J.2
-
23
-
-
21344495415
-
Effect of temperature on the production of low molecular fatty acids within an anoxic marine sediment slurry
-
Kondo R., Nishijima T., and Hata Y. Effect of temperature on the production of low molecular fatty acids within an anoxic marine sediment slurry. Fish. Sci. 59 (1993) 1189-1194
-
(1993)
Fish. Sci.
, vol.59
, pp. 1189-1194
-
-
Kondo, R.1
Nishijima, T.2
Hata, Y.3
-
24
-
-
85008118532
-
Kinetic study on the mineralization of low molecular fatty acids in an anoxic marine sediment
-
Kondo R., Nishijima T., and Hata Y. Kinetic study on the mineralization of low molecular fatty acids in an anoxic marine sediment. Fish. Sci. 61 (1995) 482-486
-
(1995)
Fish. Sci.
, vol.61
, pp. 482-486
-
-
Kondo, R.1
Nishijima, T.2
Hata, Y.3
-
25
-
-
3242810318
-
MRGA3: integrated software for molecular evolutionary genetic analysis and sequence alignment
-
Kumar S., Tamura T., and Nei M. MRGA3: integrated software for molecular evolutionary genetic analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
-
(2004)
Brief. Bioinform.
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, T.2
Nei, M.3
-
26
-
-
0028091276
-
Oxygen consumption kinetics of Nitrosomonas europaea and Nitrobacter hamburgensis in mixed continuous cultures at different oxygen concentrations
-
Laanbroek H.J., Bodelier P.L.E., and Gerards S. Oxygen consumption kinetics of Nitrosomonas europaea and Nitrobacter hamburgensis in mixed continuous cultures at different oxygen concentrations. Arch. Microbiol. 161 (1994) 156-162
-
(1994)
Arch. Microbiol.
, vol.161
, pp. 156-162
-
-
Laanbroek, H.J.1
Bodelier, P.L.E.2
Gerards, S.3
-
27
-
-
0032954211
-
Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments
-
McCaig A.E., Phillips C.J., Stephen J.R., Kowalchuk G.A., Harvey S.M., Herbert R.A., Embley T.M., and Prosser J.I. Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments. Appl. Environ. Microbiol. 65 (1999) 213-220
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 213-220
-
-
McCaig, A.E.1
Phillips, C.J.2
Stephen, J.R.3
Kowalchuk, G.A.4
Harvey, S.M.5
Herbert, R.A.6
Embley, T.M.7
Prosser, J.I.8
-
29
-
-
0028976712
-
Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
-
Mullins T.D., Britschgi T.B., Krest R.L., and Giovannoni S.T. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40 (1995) 148-158
-
(1995)
Limnol. Oceanogr.
, vol.40
, pp. 148-158
-
-
Mullins, T.D.1
Britschgi, T.B.2
Krest, R.L.3
Giovannoni, S.T.4
-
30
-
-
0029124948
-
Dominance of one bacterial phylotype at a mid-Atlantic ridge hydrothermal vent site
-
Polz M., and Cavanaugh C.M. Dominance of one bacterial phylotype at a mid-Atlantic ridge hydrothermal vent site. Proc. Natl. Acad. Sci. USA 92 (1995) 7232-7236
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 7232-7236
-
-
Polz, M.1
Cavanaugh, C.M.2
-
31
-
-
27744530866
-
Bacterial community composition in different sediments from the eastern Mediterranean sea: a comparison of four 16S ribosomal DNA clone libraries
-
Polymenakou P.N., Bertilsson S., Tselepides A., and Stephanou E.G. Bacterial community composition in different sediments from the eastern Mediterranean sea: a comparison of four 16S ribosomal DNA clone libraries. Microb. Ecol. 50 (2005) 447-462
-
(2005)
Microb. Ecol.
, vol.50
, pp. 447-462
-
-
Polymenakou, P.N.1
Bertilsson, S.2
Tselepides, A.3
Stephanou, E.G.4
-
32
-
-
84986870589
-
The use of DAPI for identifying and counting aquatic microflora
-
Porter K.G., and Feig Y.S. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25 (1980) 943-948
-
(1980)
Limnol. Oceanogr.
, vol.25
, pp. 943-948
-
-
Porter, K.G.1
Feig, Y.S.2
-
33
-
-
0029759760
-
Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
-
Purdy K.J., Embley T.M., Takii S., and Nedwell D.B. Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl. Environ. Microbiol. 62 (1996) 3905-3907
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3905-3907
-
-
Purdy, K.J.1
Embley, T.M.2
Takii, S.3
Nedwell, D.B.4
-
34
-
-
0030621163
-
Comparative description of microbial community structure in surface sediments of eutrophic bays
-
Rajendran N., Matsuda O., Rajendran R., and Urushigawa Y. Comparative description of microbial community structure in surface sediments of eutrophic bays. Mar. Pollut. Bull. 34 (1997) 26-34
-
(1997)
Mar. Pollut. Bull.
, vol.34
, pp. 26-34
-
-
Rajendran, N.1
Matsuda, O.2
Rajendran, R.3
Urushigawa, Y.4
-
35
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook J., Fritsch E.F., and Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1989)
Molecular cloning: a laboratory manual. 2nd ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss P.D., and Handelsman J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71 (2004) 1501-1506
-
(2004)
Appl. Environ. Microbiol.
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
37
-
-
0035463837
-
Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
-
Singleton D., Furlong M.A., Rathbun S.L., and Whitman W.B. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl. Environ. Microbiol. 67 (2001) 4374-4376
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4374-4376
-
-
Singleton, D.1
Furlong, M.A.2
Rathbun, S.L.3
Whitman, W.B.4
-
38
-
-
34547810329
-
Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer
-
Spain A.M., Peacock A.D., Istok J.D., Elshahed M.S., Najar F.Z., Roe B.A., White D.C., and Krumholz L.R. Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer. Appl. Environ. Microbiol. 73 (2007) 4892-4904
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 4892-4904
-
-
Spain, A.M.1
Peacock, A.D.2
Istok, J.D.3
Elshahed, M.S.4
Najar, F.Z.5
Roe, B.A.6
White, D.C.7
Krumholz, L.R.8
-
39
-
-
10644265395
-
Microbial communities associated with filter materials in recirculating aquaculture systems of freshwater fish
-
Sugita H., Nakamura H., and Shimada T. Microbial communities associated with filter materials in recirculating aquaculture systems of freshwater fish. Aquaculture 243 (2005) 403-409
-
(2005)
Aquaculture
, vol.243
, pp. 403-409
-
-
Sugita, H.1
Nakamura, H.2
Shimada, T.3
-
40
-
-
0031574072
-
The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res. 25 (1997) 4876-4882
-
(1997)
Nucleic Acid Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
41
-
-
0032696569
-
Microbial diversity on marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis
-
Urakawa H., Kita-Tsukamoto K., and Ohwada K. Microbial diversity on marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiol 145 (1999) 3305-3315
-
(1999)
Microbiol
, vol.145
, pp. 3305-3315
-
-
Urakawa, H.1
Kita-Tsukamoto, K.2
Ohwada, K.3
-
42
-
-
0034554798
-
Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling
-
Urakawa H., Yoshida T., Nishimura M., and Ohwada K. Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling. Environ. Microbiol 2 (2000) 542-554
-
(2000)
Environ. Microbiol
, vol.2
, pp. 542-554
-
-
Urakawa, H.1
Yoshida, T.2
Nishimura, M.3
Ohwada, K.4
-
43
-
-
0027707186
-
Fish farming and the environment
-
Warner G.F., and Domaniewski J.C.J. Fish farming and the environment. Biologist 40 (1993) 202-205
-
(1993)
Biologist
, vol.40
, pp. 202-205
-
-
Warner, G.F.1
Domaniewski, J.C.J.2
|