TiQuant: Software for tissue analysis, quantification and surface reconstruction

Bioinformatics

Volumn 31, Issue 19, 2015, Pages 3234-3236

  Friebel, Adrian ^a   Neitsch, Johannes ^a   Johann, Tim ^a   Hammad, Seddik ^b,c   Hengstler, Jan G ^b   Drasdo, Dirk ^a,d   Hoehme, Stefan ^a,d  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b LEIBNIZ RESEARCH CENTRE FOR WORKING ENVIRONMENT AND HUMAN FACTORS   (Germany)

^c South Valley University   (Egypt)

^d INRIA   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANTIBODY SPECIFICITY; COMPUTER ASSISTED TOMOGRAPHY; COMPUTER GRAPHICS; COMPUTER PROGRAM; HUMAN; IMAGE PROCESSING; PROCEDURES; SYSTEMS BIOLOGY;

ALGORITHMS; COMPUTER GRAPHICS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; ORGAN SPECIFICITY; SOFTWARE; SYSTEMS BIOLOGY; TOMOGRAPHY, X-RAY COMPUTED;

EID: 84943416052     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv346     Document Type: Article

References (7)

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2. Hammad, S. et al. (2014) Protocols for staining of bile canalicular and sinusoidal networks of human, mouse and pig livers, three-dimensional reconstruction and quantification of tissue microarchitecture by image processing and analysis. Arch Toxicol., 88, 1161-183
3. Hoehme, S. and Drasdo, D. (2010) A cell-based simulation software for multicellular systems. Bioinformatics, 26, 2641-2642
4. Hoehme, S. et al (2010) Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration. Proc. Natl. Acad. Sci. USA, 107, 10371-10376
5. Klauschen, F. et al (2009) Computational reconstruction of cell and tissue surfaces for modeling and data analysis. Nat. Protocols, 4, 1006-10012
6. Maurer, C.R. et al. (2003) A linear time algorithm for computing exact euclidean distance transforms of binary images in arbitrary dimensions. IEEE Trans. Pattern Anal. Mach. Intell., 25, 265-270
7. Schliess, F. et al. (2014) Integrated metabolic spatial-temporal model for the prediction of ammonia detoxification during liver damage and regeneration. Hepatology, 60, 2040-2051