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Volumn 10, Issue 8, 2015, Pages

Diversity of marine-derived fungal cultures exposed by DNA barcodes: The algorithm matters

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RIBOSOMAL SPACER DNA; SEA WATER;

EID: 84943339196     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0136130     Document Type: Article
Times cited : (15)

References (74)
  • 5
    • 84856406381 scopus 로고    scopus 로고
    • Lessons from the past and charting the future of marine natural products drug discovery and chemical biology
    • Gerwick WH, Moore BS. Lessons from the past and charting the future of marine natural products drug discovery and chemical biology. Chemistry & biology. 2012; 19(1): 85-98.
    • (2012) Chemistry & Biology. , vol.19 , Issue.1 , pp. 85-98
    • Gerwick, W.H.1    Moore, B.S.2
  • 6
    • 66449094639 scopus 로고    scopus 로고
    • Broad-spectrum antimicrobial epiphytic and endophytic fungi from marine organisms: Isolation, bioassay and taxonomy
    • PMID: 19597575
    • Zhang Y, Mu J, Feng Y, Kang Y, Zhang J, Gu P-J, et al. Broad-spectrum antimicrobial epiphytic and endophytic fungi from marine organisms: isolation, bioassay and taxonomy. Mar Drugs. 2009; 7(2): 97-112. doi: 10.3390/md7020097 PMID: 19597575
    • (2009) Mar Drugs. , vol.7 , Issue.2 , pp. 97-112
    • Zhang, Y.1    Mu, J.2    Feng, Y.3    Kang, Y.4    Zhang, J.5    Gu, P.-J.6
  • 9
    • 78649450996 scopus 로고    scopus 로고
    • Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
    • PMID: 20520651
    • Thomas T, Rusch D, DeMaere MZ, Yung PY, Lewis M, Halpern A, et al. Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis. The ISME journal. 2010; 4 (12): 1557-67. doi: 10.1038/ismej.2010.74 PMID: 20520651
    • (2010) The ISME Journal. , vol.4 , Issue.12 , pp. 1557-1567
    • Thomas, T.1    Rusch, D.2    DeMaere, M.Z.3    Yung, P.Y.4    Lewis, M.5    Halpern, A.6
  • 10
    • 84883498307 scopus 로고    scopus 로고
    • Phylogeny Drives Large Scale Patterns in Australian Marine Bioactivity and Provides a New Chemical Ecology Rationale for Future Biodiscovery
    • PMID: 24040076
    • Evans-Illidge EA, Logan M, Doyle J, Fromont J, Battershill CN, Ericson G, et al. Phylogeny Drives Large Scale Patterns in Australian Marine Bioactivity and Provides a New Chemical Ecology Rationale for Future Biodiscovery. Plos One. 2013; 8(9): e73800. doi: 10.1371/journal.pone.0073800 PMID: 24040076
    • (2013) Plos One. , vol.8 , Issue.9
    • Evans-Illidge, E.A.1    Logan, M.2    Doyle, J.3    Fromont, J.4    Battershill, C.N.5    Ericson, G.6
  • 16
    • 0037423543 scopus 로고    scopus 로고
    • Biological identifications through DNA barcodes
    • PMID: ISI: 000181064200013
    • Hebert PDN, Cywinska A, Ball SL, de Waard JR. Biological identifications through DNA barcodes. P Roy SocB-Biol Sci. 2003; 270(1512): 313-21. doi: 10.1098/rspb.2002.2218 PMID: ISI: 000181064200013.
    • (2003) P Roy SocB-Biol Sci. , vol.270 , Issue.1512 , pp. 313-321
    • Hebert, P.D.N.1    Cywinska, A.2    Ball, S.L.3    DeWaard, J.R.4
  • 17
    • 84870954185 scopus 로고    scopus 로고
    • Cryptic diversity in flathead fishes (Scorpaeniformes: Platycephalidae) across the Indo-West Pacific uncovered by DNA barcoding
    • PMID: 23006488
    • Puckridge M, Andreakis N, Appleyard SA, Ward RD. Cryptic diversity in flathead fishes (Scorpaeniformes: Platycephalidae) across the Indo-West Pacific uncovered by DNA barcoding. Mol Ecol Resour. 2013; 13(1): 32-42. doi: 10.1111/1755-0998.12022 PMID: 23006488
    • (2013) Mol Ecol Resour. , vol.13 , Issue.1 , pp. 32-42
    • Puckridge, M.1    Andreakis, N.2    Appleyard, S.A.3    Ward, R.D.4
  • 18
    • 8844220527 scopus 로고    scopus 로고
    • Identification of birds through DNA barcodes
    • PMID: ISI: 000224737100022
    • Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. Identification of birds through DNA barcodes. Plos Biol. 2004; 2(10): 1657-63. doi: ARTN e312 doi: 10.1371/journal.pbio.0020312 PMID: ISI: 000224737100022.
    • (2004) Plos Biol. , vol.2 , Issue.10 , pp. 1657-1663
    • Hebert, P.D.N.1    Stoeckle, M.Y.2    Zemlak, T.S.3    Francis, C.M.4
  • 19
    • 84859972408 scopus 로고    scopus 로고
    • Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
    • PMID: ISI: 000303246100068
    • Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, et al. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. P Natl Acad Sci USA. 2012; 109(16): 6241-6. doi: 10.1073/pnas.1117018109 PMID: ISI: 000303246100068.
    • (2012) P Natl Acad Sci USA , vol.109 , Issue.16 , pp. 6241-6246
    • Schoch, C.L.1    Seifert, K.A.2    Huhndorf, S.3    Robert, V.4    Spouge, J.L.5    Levesque, C.A.6
  • 20
    • 77954336858 scopus 로고    scopus 로고
    • ITS as an environmental DNA barcode for fungi: An in silico approach reveals potential PCR biases
    • PMID: ISI: 000280805400003
    • Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P, Kauserud H. ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. Bmc Microbiol. 2010; 10 (1): 189. doi: Artn 189 doi: 10.1186/1471-2180-10-189 PMID: ISI: 000280805400003.
    • (2010) Bmc Microbiol. , vol.10 , Issue.1 , pp. 189
    • Bellemain, E.1    Carlsen, T.2    Brochmann, C.3    Coissac, E.4    Taberlet, P.5    Kauserud, H.6
  • 21
    • 70349482733 scopus 로고    scopus 로고
    • 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    • PMID: 19703112
    • Buée M, Reich M, Murat C, Morin E, Nilsson RH, Uroz S, et al. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytologist. 2009; 184(2): 449-56. doi: 10.1111/j.1469-8137.2009.03003.x PMID: 19703112
    • (2009) New Phytologist , vol.184 , Issue.2 , pp. 449-456
    • Buée, M.1    Reich, M.2    Murat, C.3    Morin, E.4    Nilsson, R.H.5    Uroz, S.6
  • 22
    • 36448929071 scopus 로고    scopus 로고
    • Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland
    • Epub 2007/08/22 PMID: 17710446
    • Smith ME, Douhan GW, Rizzo DM. Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland. Mycorrhiza. 2007; 18(1): 15-22. Epub 2007/08/22. doi: 10.1007/s00572-0070148-z PMID: 17710446.
    • (2007) Mycorrhiza , vol.18 , Issue.1 , pp. 15-22
    • Smith, M.E.1    Douhan, G.W.2    Rizzo, D.M.3
  • 23
    • 79955628963 scopus 로고    scopus 로고
    • Phylogenetic Identification of Fungi Isolated from the Marine Sponge Tethya aurantium and Identification of Their Secondary Metabolites
    • PMID: ISI: 000292632300007
    • Wiese J, Ohlendorf B, Blumel M, Schmaljohann R, Imhoff JF. Phylogenetic Identification of Fungi Isolated from the Marine Sponge Tethya aurantium and Identification of Their Secondary Metabolites. Mar Drugs. 2011; 9(4): 561-85. doi: 10.3390/Md9040561 PMID: ISI: 000292632300007.
    • (2011) Mar Drugs. , vol.9 , Issue.4 , pp. 561-585
    • Wiese, J.1    Ohlendorf, B.2    Blumel, M.3    Schmaljohann, R.4    Imhoff, J.F.5
  • 24
    • 0036208872 scopus 로고    scopus 로고
    • Recent progress in multiple sequence alignment: A survey
    • PMID: 11966409
    • Notredame C. Recent progress in multiple sequence alignment: a survey. Pharmacogenomics. 2002; 3 (1): 131-44. PMID: 11966409
    • (2002) Pharmacogenomics , vol.3 , Issue.1 , pp. 131-144
    • Notredame, C.1
  • 25
    • 84886371266 scopus 로고    scopus 로고
    • Alignment-free analysis of barcode sequences by means of compression-based methods
    • PMID: ISI: 000318869400004
    • La Rosa M, Fiannaca A, Rizzo R, Urso A. Alignment-free analysis of barcode sequences by means of compression-based methods. Bmc Bioinformatics. 2013; 14 (Suppl 7), S4. doi: Artn S4 doi: 10.1186/1471-2105-14-S7-S4 PMID: ISI: 000318869400004.
    • (2013) Bmc Bioinformatics , vol.14 , pp. S4
    • La Rosa, M.1    Fiannaca, A.2    Rizzo, R.3    Urso, A.4
  • 26
    • 28544451130 scopus 로고    scopus 로고
    • Multiple sequence alignment accuracy and evolutionary distance estimation
    • PMID: ISI: 000234142200001
    • Rosenberg MS Multiple sequence alignment accuracy and evolutionary distance estimation. Bmc Bioinformatics. 2005; 6(1), 278. doi: Artn 278 doi: 10.1186/1471-2105-6-278 PMID: ISI: 000234142200001.
    • (2005) Bmc Bioinformatics , vol.6 , Issue.1 , pp. 278
    • Rosenberg, M.S.1
  • 27
    • 25444528241 scopus 로고    scopus 로고
    • Evolutionary distance estimation and fidelity of pair wise sequence alignment
    • PMID: ISI: 000228820700001
    • Rosenberg MS Evolutionary distance estimation and fidelity of pair wise sequence alignment. Bmc Bioinformatics. 2005; 6(1): 102. doi: Artn 102 doi: 10.1186/1471-2105-6-102 PMID: ISI: 000228820700001.
    • (2005) Bmc Bioinformatics , vol.6 , Issue.1 , pp. 102
    • Rosenberg, M.S.1
  • 28
    • 0001464973 scopus 로고
    • Estimation of evolutionary distances between homologous nucleotide sequences
    • Kimura M. Estimation of evolutionary distances between homologous nucleotide sequences. Proceedings of the National Academy of Sciences. 1981; 78(1): 454-8.
    • (1981) Proceedings of the National Academy of Sciences. , vol.78 , Issue.1 , pp. 454-458
    • Kimura, M.1
  • 29
    • 0028108336 scopus 로고
    • Estimation of evolutionary distances between nucleotide sequences
    • PMID: 7932793
    • Zharkikh A. Estimation of evolutionary distances between nucleotide sequences. Journal of molecular evolution. 1994; 39(3): 315-29. PMID: 7932793
    • (1994) Journal of Molecular Evolution , vol.39 , Issue.3 , pp. 315-329
    • Zharkikh, A.1
  • 30
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • PMID: 9918953
    • Posada D, Crandall KA. Modeltest: testing the model of DNA substitution. Bioinformatics. 1998; 14 (9): 817-8. PMID: 9918953
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 59649095778 scopus 로고    scopus 로고
    • Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues
    • PMID: ISI: 000262963400023
    • Lu Y, Sze SH. Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues. Nucleic Acids Research. 2009; 37(2): 463-72. doi: 10.1093/Nar/Gkn945 PMID: ISI: 000262963400023.
    • (2009) Nucleic Acids Research. , vol.37 , Issue.2 , pp. 463-472
    • Lu, Y.1    Sze, S.H.2
  • 32
    • 0005760067 scopus 로고    scopus 로고
    • Dominant fungi from Australian coral reefs
    • Morrison-Gardiner S. Dominant fungi from Australian coral reefs. Fungal Divers. 2002; 9: 105-21.
    • (2002) Fungal Divers. , vol.9 , pp. 105-121
    • Morrison-Gardiner, S.1
  • 34
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium. 1999; 41: 95-8.
    • (1999) Nucleic Acids Symposium. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 35
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    • Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology. 2011; 7(1). doi: http://www.nature.com/msb/journal/v7/n1/suppinfo/msb201175S1.html.
    • (2011) Molecular Systems Biology. , vol.7 , Issue.1
    • Sievers, F.1    Wilm, A.2    Dineen, D.3    Gibson, T.J.4    Karplus, K.5    Li, W.6
  • 36
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • PMID: 12136088
    • Katoh K, Misawa K, Kuma Ki, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research. 2002; 30(14): 3059-66. doi: 10.1093/nar/gkf436 PMID: 12136088
    • (2002) Nucleic Acids Research. , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Ki, K.3    Miyata, T.4
  • 37
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • PMID: ISI: 000220487200025
    • Edgar RC MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research. 2004; 32(5): 1792-7. doi: 10.1093/Nar/Gkh340 PMID: ISI: 000220487200025.
    • (2004) Nucleic Acids Research. , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 38
    • 29244447181 scopus 로고    scopus 로고
    • Kalign - An accurate and fast multiple sequence alignment algorithm
    • Epub 2005/12/14 PMID: 16343337; PubMed Central PMCID: PMC1325270
    • Lassmann T, Sonnhammer EL. Kalign-an accurate and fast multiple sequence alignment algorithm. Bmc Bioinformatics. 2005; 6: 298. Epub 2005/12/14. doi: 10.1186/1471-2105-6-298 PMID: 16343337; PubMed Central PMCID: PMC1325270.
    • (2005) Bmc Bioinformatics , vol.6 , pp. 298
    • Lassmann, T.1    Sonnhammer, E.L.2
  • 40
    • 0027055554 scopus 로고
    • Signal, noise and reliability in molecular phylogenetic analysis
    • PMID: 1624764
    • Hillis DM, Huelsenbeck JP. Signal, noise and reliability in molecular phylogenetic analysis. J Hered. 1992; 83: 189-95. PMID: 1624764
    • (1992) J Hered. , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 41
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • PMID: 7463489
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of molecular evolution. 1980; 16(2): 111-20. PMID: 7463489
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 42
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • PMID: 21546353
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution. 2011; 28(10): 2731-9. doi: 10.1093/molbev/msr121 PMID: 21546353
    • (2011) Molecular Biology and Evolution. , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 43
    • 84859589467 scopus 로고    scopus 로고
    • Automatic Barcode Gap Discovery for primary species delimitation
    • PMID: ISI: 000302616200008
    • Puillandre N, Lambert A, Brouillet S, Achaz G. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Mol Ecol. 2012; 21(8): 1864-77. doi: 10.1111/j.1365-294X.2011.05239.x PMID: ISI: 000302616200008.
    • (2012) Mol Ecol. , vol.21 , Issue.8 , pp. 1864-1877
    • Puillandre, N.1    Lambert, A.2    Brouillet, S.3    Achaz, G.A.B.G.D.4
  • 44
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes3: Bayesian phylogenetic inference under mixed models
    • Epub 2003/08/13. PMID: 12912839
    • Ronquist F, Huelsenbeck JP. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003; 19(12): 1572-4. Epub 2003/08/13. PMID: 12912839.
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 45
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • PMID: 6429346
    • Lanave C, Preparata G, Sacone C, Serio G. A new method for calculating evolutionary substitution rates. Journal of molecular evolution. 1984; 20(1): 86-93. PMID: 6429346
    • (1984) Journal of Molecular Evolution , vol.20 , Issue.1 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Sacone, C.3    Serio, G.4
  • 46
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • PMID: 8336541
    • Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution. 1993; 10(3): 512-26. PMID: 8336541
    • (1993) Molecular Biology and Evolution. , vol.10 , Issue.3 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 49
    • 77951255646 scopus 로고    scopus 로고
    • Yeast biodiversity from oleic ecosystems: Study of their biotechnological properties
    • PMID: ISI: 000278170500007
    • Romo-Sanchez S, Alves-Baffi M, Arevalo-Villena M, Ubeda-Iranzo J, Briones-Perez A. Yeast biodiversity from oleic ecosystems: Study of their biotechnological properties. Food Microbiol. 2010; 27(4): 487-92. doi: 10.1016/J.Fm.2009.12.009 PMID: ISI: 000278170500007.
    • (2010) Food Microbiol. , vol.27 , Issue.4 , pp. 487-492
    • Romo-Sanchez, S.1    Alves-Baffi, M.2    Arevalo-Villena, M.3    Ubeda-Iranzo, J.4    Briones-Perez, A.5
  • 51
    • 67149109995 scopus 로고    scopus 로고
    • The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
    • PMID: 19459974
    • Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E. The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. Fems Microbiol Lett. 2009; 296(1): 97-101. doi: 10.1111/j.1574-6968.2009.01618.x PMID: 19459974
    • (2009) Fems Microbiol Lett. , vol.296 , Issue.1 , pp. 97-101
    • Nilsson, R.H.1    Ryberg, M.2    Abarenkov, K.3    Sjökvist, E.4    Kristiansson, E.5
  • 52
    • 77952574831 scopus 로고    scopus 로고
    • Marine drugs from sponge-microbe association - A review
    • PMID: 20479984
    • Thomas TRA, Kavlekar DP, Loka-Bharathi PA. Marine drugs from sponge-microbe association - A review. Mar Drugs. 2010; 8(4): 1417-68. doi: 10.3390/md8041417 PMID: 20479984
    • (2010) Mar Drugs. , vol.8 , Issue.4 , pp. 1417-1468
    • Thomas, T.R.A.1    Kavlekar, D.P.2    Loka-Bharathi, P.A.3
  • 55
    • 84943227888 scopus 로고    scopus 로고
    • Assessment of mycological diversity of marine sediment of southeast coast of Tamilnadu, India
    • Samuel P, Prince L, Prabakaran P. Assessment of mycological diversity of marine sediment of southeast coast of Tamilnadu, India. European Journal of Experimental Biology. 2011; 1(3): 130-8.
    • (2011) European Journal of Experimental Biology. , vol.1 , Issue.3 , pp. 130-138
    • Samuel, P.1    Prince, L.2    Prabakaran, P.3
  • 56
    • 84872771145 scopus 로고    scopus 로고
    • Intra-annual variation in turbidity in response to terrestrial runoff on near-shore coral reefs of the Great Barrier Reef
    • Fabricius KE, De'ath G, Humphrey C, Zagorskis I, Schaffelke B. Intra-annual variation in turbidity in response to terrestrial runoff on near-shore coral reefs of the Great Barrier Reef. Estuarine, Coastal and Shelf Science. 2013; 116: 57-65.
    • (2013) Estuarine, Coastal and Shelf Science. , vol.116 , pp. 57-65
    • Fabricius, K.E.1    De'Ath, G.2    Humphrey, C.3    Zagorskis, I.4    Schaffelke, B.5
  • 57
  • 59
    • 83555164737 scopus 로고    scopus 로고
    • Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: Impacts on the physiology of a coral reef sponge
    • Bannister R, Battershill C, De Nys R. Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: Impacts on the physiology of a coral reef sponge. Continental Shelf Research. 2012; 32: 86-95.
    • (2012) Continental Shelf Research. , vol.32 , pp. 86-95
    • Bannister, R.1    Battershill, C.2    De Nys, R.3
  • 60
    • 84876187622 scopus 로고    scopus 로고
    • Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities
    • PMID: 23377949
    • Bokulich NA, Mills DA. Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities. Applied and Environmental Microbiology. 2013; 79(8): 2519-26. doi: 10.1128/AEM.03870-12 PMID: 23377949
    • (2013) Applied and Environmental Microbiology , vol.79 , Issue.8 , pp. 2519-2526
    • Bokulich, N.A.1    Mills, D.A.2
  • 61
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • PMID: ISI: 000186738000005
    • Alvarez I, Wendel JF. Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet EVol. 2003; 29(3): 417-34. doi: 10.1016/S1055-7903(03)00208-2 PMID: ISI: 000186738000005.
    • (2003) Mol Phylogenet EVol. , vol.29 , Issue.3 , pp. 417-434
    • Alvarez, I.1    Wendel, J.F.2
  • 62
    • 84861528690 scopus 로고    scopus 로고
    • Phylogenetic relationships among the Caribbean members of the Cliona viridis complex (Porifera, Demospongiae, Hadromerida) using nuclear and mitochondrial DNA sequences
    • PMID: ISI: 000305374600003
    • Escobar D, Zea S, Sanchez JA. Phylogenetic relationships among the Caribbean members of the Cliona viridis complex (Porifera, Demospongiae, Hadromerida) using nuclear and mitochondrial DNA sequences. Mol Phylogenet EVol. 2012; 64(2): 271-84. doi: 10.1016/j.ympev.2012.03.021 PMID: ISI: 000305374600003.
    • (2012) Mol Phylogenet EVol. , vol.64 , Issue.2 , pp. 271-284
    • Escobar, D.1    Zea, S.2    Sanchez, J.A.3
  • 63
    • 84893421058 scopus 로고    scopus 로고
    • Combining morphometrics with molecular taxonomy: How different are similar foliose keratose sponges from the Australian tropics?
    • Epub 2014/01/22 PMID: 24445018
    • Abdul Wahab MA, Fromont J, Whalan S, Webster N, Andreakis N. Combining morphometrics with molecular taxonomy: How different are similar foliose keratose sponges from the Australian tropics? Mol Phylogenet EVol. 2014; 73: 23-39. Epub 2014/01/22. doi: 10.1016/j.ympev.2014.01.004 PMID: 24445018.
    • (2014) Mol Phylogenet EVol. , vol.73 , pp. 23-39
    • Abdul Wahab, M.A.1    Fromont, J.2    Whalan, S.3    Webster, N.4    Andreakis, N.5
  • 64
    • 45749142504 scopus 로고    scopus 로고
    • Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and Its implications for molecular species identification
    • PMID: 19204817
    • Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson K-H. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evolutionary bioinformatics online. 2008; 4: 193. PMID: 19204817
    • (2008) Evolutionary Bioinformatics Online. , vol.4 , pp. 193
    • Nilsson, R.H.1    Kristiansson, E.2    Ryberg, M.3    Hallenberg, N.4    Larsson, K.-H.5
  • 67
    • 41849149675 scopus 로고    scopus 로고
    • Testing the reliability of genetic methods of species identification via simulation
    • Epub 2008/04/10 PMID: 18398767
    • Ross HA, Murugan S, Li WL. Testing the reliability of genetic methods of species identification via simulation. Systematic Biol. 2008; 57(2): 216-30. Epub 2008/04/10. doi: 10.1080/10635150802032990 PMID: 18398767.
    • (2008) Systematic Biol. , vol.57 , Issue.2 , pp. 216-230
    • Ross, H.A.1    Murugan, S.2    Li, W.L.3
  • 68
    • 84902354587 scopus 로고    scopus 로고
    • VIPBarcoding: Composition vector-based software for rapid species identification based on DNAbarcoding
    • Fan L, Hui JH, Yu ZG, Chu KH. VIPBarcoding: composition vector-based software for rapid species identification based on DNAbarcoding. Mol Ecol Resour. 2014.
    • (2014) Mol Ecol Resour.
    • Fan, L.1    Hui, J.H.2    Yu, Z.G.3    Chu, K.H.4
  • 69
    • 70349409998 scopus 로고    scopus 로고
    • Accelerated species inventory on Madagascar using coalescent-based models of species delineation
    • PMID: ISI: 000270004400002
    • Monaghan MT, Wild R, Elliot M, Fujisawa T, Balke M, Inward DJ, et al. Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation. Systematic Biol. 2009; 58 (3): 298-311. doi: 10.1093/sysbio/syp027 PMID: ISI: 000270004400002.
    • (2009) Systematic Biol. , vol.58 , Issue.3 , pp. 298-311
    • Monaghan, M.T.1    Wild, R.2    Elliot, M.3    Fujisawa, T.4    Balke, M.5    Inward, D.J.6
  • 70
    • 78649742492 scopus 로고    scopus 로고
    • Environmental barcoding reveals massive dinoflagellate diversity in marine environments
    • PMID: 21085582
    • Stern RF, Horak A, Andrew RL, Coffroth M-A, Andersen RA, Küpper FC, et al. Environmental barcoding reveals massive dinoflagellate diversity in marine environments. Plos One. 2010; 5(11): e13991. doi: 10.1371/journal.pone.0013991 PMID: 21085582
    • (2010) Plos One. , vol.5 , Issue.11
    • Stern, R.F.1    Horak, A.2    Andrew, R.L.3    Coffroth, M.-A.4    Andersen, R.A.5    Küpper, F.C.6
  • 71
    • 78049240050 scopus 로고    scopus 로고
    • The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies
    • PMID: 20628621
    • Schloss PD The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies. Plos Comput Biol. 2010; 6(7): e1000844. doi: 10.1371/journal.pcbi.1000844 PMID: 20628621
    • (2010) Plos Comput Biol. , vol.6 , Issue.7
    • Schloss, P.D.1
  • 72
    • 0346971259 scopus 로고    scopus 로고
    • ITS secondary structure derived from comparative analysis: Implications for sequence alignment and phylogeny of the Asteraceae
    • PMID: ISI: 000185729200003
    • Goertzen LR, Cannone JJ, Gutell RR, Jansen RK. ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae. Mol Phylogenet EVol. 2003; 29(2): 216-34. doi: 10.1016/S1055-7903(03)00094-0 PMID: ISI: 000185729200003.
    • (2003) Mol Phylogenet EVol. , vol.29 , Issue.2 , pp. 216-234
    • Goertzen, L.R.1    Cannone, J.J.2    Gutell, R.R.3    Jansen, R.K.4
  • 73
    • 84861580425 scopus 로고    scopus 로고
    • Large-scale species delimitation method for hyperdiverse groups
    • PMID: ISI: 000304389500012
    • Puillandre N, Modica MV, Zhang Y, Sirovich L, Boisselier MC, Cruaud C, et al. Large-scale species delimitation method for hyperdiverse groups. Mol Ecol. 2012; 21(11): 2671-91. doi: 10.1111/j.1365-294X.2012.05559.x PMID: ISI: 000304389500012.
    • (2012) Mol Ecol. , vol.21 , Issue.11 , pp. 2671-2691
    • Puillandre, N.1    Modica, M.V.2    Zhang, Y.3    Sirovich, L.4    Boisselier, M.C.5    Cruaud, C.6
  • 74
    • 84962926652 scopus 로고    scopus 로고
    • National Mapping Division, Geoscience Australia, Department of Industry, Tourism and Resources Available under Creative Commons Attribution 40 International Licence
    • Australia G. GEODATA COAST 100K 2004: Product User Guide. National Mapping Division, Geoscience Australia, Department of Industry, Tourism and Resources Available under Creative Commons Attribution 40 International Licence from http://wwwgagovau/metadata-gateway/metadata/record/61395/.2004.
    • GEODATA COAST 100K 2004: Product User Guide
    • Australia, G.1


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