Creating a specialist protein resource network: A meeting report for the protein bioinformatics and community resources retreat

Database

Volumn 2015, Issue , 2015, Pages

  Babbitt, Patricia C ^a   Bagos, Pantelis G ^b   Bairoch, Amos ^c   Bateman, Alex ^d   Chatonnet, Arnaud ^e   Chen, Mark Jinan ^f,g   Craik, David J ^h   Finn, Robert D ^d   Gloriam, David ⁱ   Haft, Daniel H ^j   Henrissat, Bernard ^k,l   Holliday, Gemma L ^a   Isberg, Vignir ^i,m   Kaas, Quentin ^h   Landsman, David ^j   Lenfant, Nicolas ^e   Manning, Gerard ^f,g   Nagano, Nozomi ⁿ   Srinivasan, Narayanaswamy ^o   O'Donovan, Claire ^d   Pruitt, Kim D ^j   Sowdhamini, Ramanathan ^p   Rawlings, Neil D ^d   Saier, Milton H ^q   Sharman, Joanna L ^r   Spedding, Michael ^s   Tsirigos, Konstantinos D ^t   Vastermark, Ake ^q   Vriend, Gerrit ^m   more..

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF THESSALY   (Greece)

^c SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^d EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^e University of Montpellier   (France)

^f SALK INSTITUTE FOR BIOLOGICAL STUDIES   (United States)

^g GENENTECH INC   (United States)

^h UNIVERSITY OF QUEENSLAND   (Australia)

ⁱ UNIVERSITY OF COPENHAGEN   (Denmark)

^j NATIONAL INSTITUTES OF HEALTH   (United States)

^k AIX MARSEILLE UNIVERSITY   (France)

^l KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

^m RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

ⁿ NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^o INDIAN INSTITUTE OF SCIENCE   (India)

^p TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^q UNIVERSITY OF CALIFORNIA   (United States)

^r UNIVERSITY OF EDINBURGH   (United Kingdom)

^s SPEDDING RESEARCH SOLUTIONS SARL   (France)

^t Stockholm University   (Sweden)

more..

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

BIOLOGY; CHEMISTRY; GENETICS; HUMAN; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; ORGANIZATION; PROTEIN DATABASE;

COMPUTATIONAL BIOLOGY; CONGRESSES AS TOPIC; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; HUMANS; MOLECULAR SEQUENCE ANNOTATION; PROTEINS;

EID: 84943302818     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bav063     Document Type: Conference Paper

References (9)

1. Lombard, V., Golaconda Ramulu, H., Drula, E. et al. (2014) The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res., 42, D490-D495.
2. Saier, M.H. Jr., Reddy, V.S., Tamang, D.G. et al. (2014) The transporter classification database. Nucleic Acids Res., 42, D251-D258.
3. Galperin, M.Y., Rigden, D.J., Fernandez-Suarez, X.M. (2015) The 2015 Nucleic Acids Research Database Issue and molecular biology database collection. Nucleic Acids Res., 43, D1-D5.
4. Holliday, G.L., Bairoch, A., Bagos, P.G. et al. (2015) Key challenges for the creation and maintenance of specialist protein resources. Proteins., 83, 1005-1013.
5. Tsirigos, K.D., Bagos, P.G., Hamodrakas, S.J. (2011) OMPdb: a database of {beta}-barrel outer membrane proteins from Gramnegative bacteria. Nucleic Acids Res., 39, D324-D331.
6. Isberg, V., Vroling, B., van der Kant, R. et al. (2014) GPCRDB: an information system for G protein-coupled receptors. Nucleic Acids Res., 42, D422-D425.
7. Marchler-Bauer, A., Derbyshire, M.K., Gonzales, N.R. et al. (2015) CDD: NCBI's conserved domain database. Nucleic Acids Res., 43, D222-D226.
8. Nagano, N., Nakayama, N., Ikeda, K. et al. (2015) EzCatDB: the enzyme reaction database, 2015 update. Nucleic Acids Res., 43, D453-D458.
9. Chen, J.S., Reddy, V., Chen, J.H. et al. (2011) Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments. J. Mol. Microbiol. Biotechnol., 21, 83-96.