NeuroPep: A comprehensive resource of neuropeptides

Database

Volumn 2015, Issue , 2015, Pages

  Wang, Yan ^a   Wang, Mingxia ^a   Yin, Sanwen ^a   Jang, Richard ^a,b   Wang, Jian ^a   Xue, Zhidong ^a   Xu, Tao ^a,c  

^a HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^c INSTITUTE OF BIOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

NEUROPEPTIDE;

ANIMAL; DATA MINING; HUMAN; MOLECULAR GENETICS; PROTEIN DATABASE;

ANIMALS; DATA MINING; DATABASES, PROTEIN; HUMANS; MOLECULAR SEQUENCE ANNOTATION; NEUROPEPTIDES;

EID: 84943181990     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bav038     Document Type: Article

References (26)

1. Burbach, J.P. (2010) Neuropeptides from concept to online database www.neuropeptides.nl. Eur. J. Pharmacol., 626, 27-48.
2. Hokfelt, T., Broberger, C., Xu, Z.Q. et al. (2000) Neuropeptides-an overview. Neuropharmacology, 39, 1337-1356.
3. Sobrino Crespo, C., Perianes Cachero, A., Puebla Jimenez, L. et al. (2014) Peptides and food intake. Front. Endocrinol., 5, 58.
4. Shahjahan, M., Kitahashi, T. and Parhar, I.S. (2014) Central pathways integrating metabolism and reproduction in teleosts. Front. Endocrinol., 5, 36.
5. Kormos, V. and Gaszner, B. (2013) Role of neuropeptides in anxiety, stress, and depression: from animals to humans. Neuropeptides, 47, 401-419.
6. Malenka, R. (2010) Intercellular Communication in the Nervous System. Academic Press, New York.
7. Fricker, L.D. (2012) Colloquium Series on Neuropeptides, Vol. 1. Morgan & Claypool Life Sciences, San Rafael, pp. 1-122.
8. van Euler, U.S. and Gaddum, J.H. (1931) An unidentified depressor substance in certain tissue extracts. J. Physiol., 72, 74-87.
9. Chang, M.M., Leeman, S.E. and Niall, H.D. (1971) Amino-acid sequence of substance P. Nat. New Biol., 232, 86-87.
10. Hoyer, D. and Bartfai, T. (2012) Neuropeptides and neuropeptide receptors: drug targets, and peptide and nonpeptide ligands: a tribute to Prof. Dieter Seebach. Chem. Biodivers., 9, 2367-2387.
11. Holmes, A., Heilig, M., Rupniak, N.M. et al. (2003) Neuropeptide systems as novel therapeutic targets for depression and anxiety disorders. Trends Pharmacol. Sci., 24, 580-588.
12. Nilsson, A., Falth, M., Zhang, X. et al. (2009) Striatal alterations of secretogranin-1, somatostatin, prodynorphin, and cholecystokinin peptides in an experimental mouse model of Parkinson disease. Mol. Cell. Proteomics, 8, 1094-1104.
13. Zamyatnin, A.A., Borchikov, A.S., Vladimirov, M.G. et al. (2006) The EROP-Moscow oligopeptide database. Nucleic Acids Res., 34, D261-D266.
14. Falth, M., Skold, K., Norrman, M. et al. (2006) SwePep, a database designed for endogenous peptides and mass spectrometry. Mol. Cell. Proteomics, 5, 998-1005.
15. Liu, F., Baggerman, G., Schoofs, L. et al. (2008) The construction of a bioactive peptide database in Metazoa. J. Proteome Res., 7, 4119-4131.
16. Shtatland, T., Guettler, D., Kossodo, M. et al. (2007) PepBank-a database of peptides based on sequence text mining and public peptide data sources. BMC Bioinformatics, 8, 280.
17. Wang, G., Li, X. and Wang, Z. (2009) APD2: the updated antimicrobial peptide database and its application in peptide design. Nucleic Acids Res., 37, D933-D937.
18. Thomas, S., Karnik, S., Barai, R.S. et al. (2010) CAMP: a useful resource for research on antimicrobial peptides. Nucleic Acids Res., 38, D774-D780.
19. Seshadri Sundararajan, V., Gabere, M.N., Pretorius, A. et al. (2012) DAMPD: a manually curated antimicrobial peptide database. Nucleic Acids Res., 40, D1108-D1112.
20. Kim, Y., Bark, S., Hook, V. et al. (2011) NeuroPedia: neuropeptide database and spectral library. Bioinformatics, 27, 2772-2773.
21. Nassel, D.R. (2002) Neuropeptides in the nervous system of Drosophila and other insects: multiple roles as neuromodulators and neurohormones. Prog. Neurobiol., 68, 1-84.
22. O'Shea, M. and Schaffer, M. (1985) Neuropeptide function: the invertebrate contribution. Annu. Rev. Neurosci., 8, 171-198.
23. Hummon, A.B., Amare, A. and Sweedler, J.V. (2006) Discovering new invertebrate neuropeptides using mass spectrometry. Mass Spectrom. Rev., 25, 77-98.
24. Dimmer, E.C., Huntley, R.P., Alam-Faruque, Y. et al. (2012) The UniProt-GO annotation database in 2011. Nucleic Acids Res., 40, D565-D570.
25. Altschul, S.F., Gish, W., Miller, W. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
26. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.