Improving the consistency of domain annotation within the Conserved Domain Database

Database

Volumn 2015, Issue , 2015, Pages

  Derbyshire, Myra K ^a   Gonzales, Noreen R ^a   Lu, Shennan ^a   He, Jane ^a   Marchler, Gabriele H ^a   Wang, Zhouxi ^a   Marchler Bauer, Aron ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; MOLECULAR GENETICS; PROCEDURES; PROTEIN DATABASE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ANALYSIS;

ALGORITHMS; DATABASES, PROTEIN; MOLECULAR SEQUENCE ANNOTATION; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, PROTEIN;

EID: 84943162437     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bav012     Document Type: Article

References (12)

1. Marchler-Bauer, A., Zheng, C., Chitsaz, F. et al. (2013) CDD: Conserved domains and protein three-dimensional structure. Nucleic Acids Res., 41(Database issue), D348-D352.
2. Letunic, I., Doerks, T. and Bork, P. (2015) SMART: Recent updates, new developments and status in 2015. Nucleic Acids Res., 43(Database issue), D257-D260.
3. Finn, R.D., Bateman, A., Clements, J. et al. (2014) Pfam: The protein families database. Nucleic Acids Res., 42(Database issue), D222-D230.
4. Tatusov, R.L., Natale, D.A., Garkavtsev, I.V. et al. (2001) The COG database: New developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res., 29, 22-28.
5. Klimke, W., Agarwala, R., Badretdin, A. et al. (2009) The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res., 37(Database issue), D216-D223.
6. Haft, D.H., Selengut, J.D., Richter, P.A. et al. (2013) TIGRFAMS and genome properties in 2013. Nucleic Acids Res., 41(Database issue), D387-D395.
7. Marchler-Bauer, A., Anderson, J.B., Chitsaz, F. et al. (2009) CDD: Specific functional annotation with the Conserved Domain Database. Nucleic Acids Res., 37(Database issue), D205-D210.
8. Marchler-Bauer, A. and Bryant, S.H. (2004) CD-Search: Protein domain annotations on the fly. Nucleic Acids Res., 32, 327-331.
9. Marchler-Bauer, A., Lu, S., Anderson, J.B. et al. (2011) CDD: A conserved domain database for the functional annotation of proteins. Nucleic Acids Res., 39(Database issue), D225-D229.
10. Geer, L.Y., Domrachev, M., Lipman, D.J. et al. (2003) CDART: Protein homology by domain architecture. Genome Res., 12, 1619-1623.
11. Coin, L., Bateman, A., Durbin, R. (2003) Enhanced protein domain discovery by using language modeling techniques from speech recognition. Proc. Natl Acad. Sci. USA, 100, 4516-4520.
12. The UniProt Consortium (2015) UniProt: A hub for protein information. Nucleic Acids Res., 43(Database issue), D204-D212.