Fine-mapping of the apple scab resistance locus Rvi12 (Vb) derived from ‘Hansen’s baccata #2’

Molecular Breeding

Volumn 34, Issue 4, 2014, Pages 2119-2129

  Padmarasu, S ^a   Sargent, D J ^a   Jaensch, M ^b   Kellerhals, M ^b   Tartarini, S ^c   Velasco, R ^a   Troggio, M ^a   Patocchi, A ^b  

^a RESEARCH AND INNOVATION CENTRE   (Italy)

^b AGROSCOPE   (Switzerland)

^c UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

Genomics; Marker assisted breeding; Pome fruits; Rosaceae; SNP; SSR

Indexed keywords

DISEASE CONTROL; FRUITS; GENES; LOSSES; MAPPING; PLANTS (BOTANY);

GENOMICS; MARKER-ASSISTED BREEDING; POME FRUIT; RESISTANCE GENES; RESISTANCE LOCUS; ROSACEA; SCAB RESISTANCE; SNP; SSR; SSR MARKERS;

GENOME;

MALUS X DOMESTICA; ROSACEAE;

EID: 84943015453     PISSN: 13803743     EISSN: 15729788     Source Type: Journal    
DOI: 10.1007/s11032-014-0167-3     Document Type: Article

References (32)

1. Bus VGM, Bassett HCM, Bowatte D, Chagné D, Ranatunga CA, Ulluwishewa D, Wiedow C, Gardiner SE (2010) Genome mapping of an apple scab, a powdery mildew and a woolly apple aphid resistance gene from open-pollinated mildew immune selection. Tree Genet Genomes 6:477–487
2. Bus V, Rikkerink E, Caffier V, Durel C, Plummers K (2011) Revision of nomenclature of the differential host-pathogen interactions of Venturia inaequalis and Malus. Annu Rev Phytopathol 49:391–413
3. Chen D, Ronald P (1999) A rapid DNA minipreparation method suitable for AFLP and other PCR applications. Plant Mol Biol Rep 17:53–57
4. Chevalier M, Lespinasse Y, Renaudin S (1991) A microscopic study of the different classes of symptoms coded by the Vf gene in Apple for resistance to scab (Venturia inaequalis). Plant Pathol 40:249–256
5. Crandall C (1926) Apple breeding at the University of Illinois. Illinois Agric Exp Stn Bull 275:341–600
6. Dayton D, Williams E (1968) Independent genes in Malus for resistance to Venturia inaequalis. Proc Am Soc Hortic Sci 92:89–93
7. Dayton D, Mowry J, Hough L, Bailey C, Williams E, Janick J, Emerson F (1970) ‘Prima’, an early fall apple with resistance to scab. Fruit Var Hortic Dig 24:20–22
8. Dunemann F, Egerer J (2010) A major resistance gene from Russian apple ‘Antonovka’ conferring field immunity against apple scab is closely linked to the Vf locus. Tree Genet Genomes 6:627–633
9. Erdin N, Tartarini S, Broggini G, Gennari F, Sansavini S, Gessler C, Patocchi A (2006) Mapping of the apple scab-resistance gene Vb. Genome 49:1238–1245
10. Fernandez-Fernandez F, Evans K, Clarke J, Govan C, James C, Maric S, Tobutt K (2008) Development of an STS map of an interspecific progeny of Malus. Tree Genet Genomes 4:469–479
11. Gessler C, Pertot I (2012) Vf scab resistance of Malus. Trees Struct Funct 26:95–108
12. Gessler C, Patocchi A, Sansavini S, Tartarini S, Gianfranceschi L (2006) Venturia inaequalis resistance in apple. Crit Rev Plant Sci 25:473–503
13. Gygax M, Gianfranceschi L, Liebhard R, Kellerhals M, Gessler C, Patocchi A (2004) Molecular markers linked to the apple scab resistance gene Vbj derived from Malus baccata jackii. Theor Appl Genet 109:1702–1709
14. Hemmat M, Brown S, Aldwinckle H, Mehlenbacher S, Weeden N, Janick J (2003) Identification and mapping of markers for resistance to apple scab from ‘Antonovka’ and ‘Hansen’s baccata #2’. Acta Hortic 622:153–161
15. Hough L, Shay J, Dayton D (1953) Apple scab resistance from Malus floribunda Sieb. Proc Am Soc Hortic Sci 62:341–347
16. Joshi S, Schaart J, Groenwold R, Jacobsen E, Schouten H, Krens F (2011) Functional analysis and expression profiling of HcrVf1 and HcrVf2 for development of scab resistant cisgenic and intragenic apples. Plant Mol Biol 75:579–591
17. Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Zheng P, Yu J, Bombarely A, Cho I, Ru S, Evans K, Peace C, Abbott AG, Mueller LA, Olmstead MA, Main D (2013) The genome database for rosaceae (GDR): year 10 update. Nucleic Acids Res 42:1237–1244
18. Kellerhals M, Furrer B (1994) Approaches for breeding apples with durable disease resistance. Euphytica 77:31–35
19. Koller W, Wilcox W (2001) Evidence for the predisposition of fungicide-resistant isolates of Venturia inaequalis to a preferential selection for resistance to other fungicides. Phytopathology 91:776–781
20. Koller W, Parker D, Turechek W, Avila-Adame C, Cronshaw K (2004) A two-phase resistance response of Venturia inaequalis populations to the QoI fungicides kresoxim-methyl and trifloxystrobin. Plant Dis 88:537–544
21. Liebhard R, Gianfranceschi L, Koller B, Ryder C, Tarchini R, Van De Weg E, Gessler C (2002) Development and characterisation of 140 new microsatellites in apple (Malus × domestica Borkh.). Mol Breed 10:217–241
22. MacHardy W (1996) Apple Scab Biology, Epidemiology, and Management. APS Press, St. Paul
23. Palumbi S, Baker C (1994) Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol Biol Evol 11:426–435
24. Parisi L, Lespinasse Y (1996) Pathogenicity of Venturia inaequalis strains of race 6 on apple clones (Malus sp). Plant Dis 80:1179–1183
25. Parisi L, Lespinasse Y, Guillaumes J, Kruger J (1993) A new race of Venturia inaequalis virulent to apples with resistance due to the Vf gene. Phytopathology 83:533–537
26. Parisi L, Fouillet V, Schouten HJ, Groenwold R, Laurens F, Didelot F, Evans K, Fischer C, Gennari F, Kemp H, Lateur M, Patocchi A, Thissen J, Tsipouridis C (2004) Variability of the pathogenicity of Venturia inaequalis in Europe. Acta Hortic 663:107–113
27. Patocchi A, Walser M, Tartarini S, Broggini G, Gennari F, Sansavini S, Gessler C (2005) Identification by genome scanning approach (GSA) of a microsatellite tightly associated with the apple scab resistance gene Vm. Genome 48:630–636
28. Patocchi A, Frei A, Frey J, Kellerhals M (2009) Towards improvement of marker assisted selection of apple scab resistant cultivars: Venturia inaequalis virulence surveys and standardization of molecular marker alleles associated with resistance genes. Mol Breed 24:337–347
29. Silfverberg-Dilworth E (2004) Identification of HcrV2 as an apple scab resistance gene and characterisation of HcrVf control sequences. Dissertation, ETH
30. Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth B, Remm M, Rozen S (2012) Primer3—new capabilities and interfaces. Nucleic Acids Res 40:115–127
31. Velasco R, Zharkikh A, Affourtit J et al (2010) The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet 42:833–839
32. Voorrips R (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78