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Volumn 12, Issue 11, 2015, Pages 1853-1864

Cytoplasmic Control of Sense-Antisense mRNA Pairs

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY RNA; EXORIBONUCLEASE; MESSENGER RNA; POR1 PROTEIN, S CEREVISIAE; PORIN; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 84942831756     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2015.08.016     Document Type: Article
Times cited : (27)

References (45)
  • 1
    • 0000577868 scopus 로고    scopus 로고
    • The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
    • Anderson J.S., Parker R.P. The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex. EMBO J. 1998, 17:1497-1506.
    • (1998) EMBO J. , vol.17 , pp. 1497-1506
    • Anderson, J.S.1    Parker, R.P.2
  • 2
    • 29244490062 scopus 로고    scopus 로고
    • Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
    • Borsani O., Zhu J., Verslues P.E., Sunkar R., Zhu J.K. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005, 123:1279-1291.
    • (2005) Cell , vol.123 , pp. 1279-1291
    • Borsani, O.1    Zhu, J.2    Verslues, P.E.3    Sunkar, R.4    Zhu, J.K.5
  • 3
    • 60149088848 scopus 로고    scopus 로고
    • Origins and Mechanisms of miRNAs and siRNAs
    • Carthew R.W., Sontheimer E.J. Origins and Mechanisms of miRNAs and siRNAs. Cell 2009, 136:642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 4
    • 84155195139 scopus 로고    scopus 로고
    • The Ccr4--not complex
    • Collart M.A., Panasenko O.O. The Ccr4--not complex. Gene 2012, 492:42-53.
    • (2012) Gene , vol.492 , pp. 42-53
    • Collart, M.A.1    Panasenko, O.O.2
  • 5
    • 0030726285 scopus 로고    scopus 로고
    • Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes
    • Dichtl B., Stevens A., Tollervey D. Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes. EMBO J. 1997, 16:7184-7195.
    • (1997) EMBO J. , vol.16 , pp. 7184-7195
    • Dichtl, B.1    Stevens, A.2    Tollervey, D.3
  • 7
    • 33645277360 scopus 로고    scopus 로고
    • Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
    • Doma M.K., Parker R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 2006, 440:561-564.
    • (2006) Nature , vol.440 , pp. 561-564
    • Doma, M.K.1    Parker, R.2
  • 8
    • 36049041612 scopus 로고    scopus 로고
    • RNA quality control in eukaryotes
    • Doma M.K., Parker R. RNA quality control in eukaryotes. Cell 2007, 131:660-668.
    • (2007) Cell , vol.131 , pp. 660-668
    • Doma, M.K.1    Parker, R.2
  • 10
    • 80052956817 scopus 로고    scopus 로고
    • Compatibility with killer explains the rise of RNAi-deficient fungi
    • Drinnenberg I.A., Fink G.R., Bartel D.P. Compatibility with killer explains the rise of RNAi-deficient fungi. Science 2011, 333:1592.
    • (2011) Science , vol.333 , pp. 1592
    • Drinnenberg, I.A.1    Fink, G.R.2    Bartel, D.P.3
  • 11
    • 69249217649 scopus 로고    scopus 로고
    • Regulatory roles of natural antisense transcripts
    • Faghihi M.A., Wahlestedt C. Regulatory roles of natural antisense transcripts. Nat. Rev. Mol. Cell Biol. 2009, 10:637-643.
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 637-643
    • Faghihi, M.A.1    Wahlestedt, C.2
  • 12
    • 57749090370 scopus 로고    scopus 로고
    • Depurination of Brome mosaic virus RNA3 in vivo results in translation-dependent accelerated degradation of the viral RNA
    • Gandhi R., Manzoor M., Hudak K.A. Depurination of Brome mosaic virus RNA3 in vivo results in translation-dependent accelerated degradation of the viral RNA. J. Biol. Chem. 2008, 283:32218-32228.
    • (2008) J. Biol. Chem. , vol.283 , pp. 32218-32228
    • Gandhi, R.1    Manzoor, M.2    Hudak, K.A.3
  • 13
    • 84896863244 scopus 로고    scopus 로고
    • Dom34 rescues ribosomes in 3' untranslated regions
    • Guydosh N.R., Green R. Dom34 rescues ribosomes in 3' untranslated regions. Cell 2014, 156:950-962.
    • (2014) Cell , vol.156 , pp. 950-962
    • Guydosh, N.R.1    Green, R.2
  • 15
    • 0030712112 scopus 로고    scopus 로고
    • Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels
    • Hastings M.L., Milcarek C., Martincic K., Peterson M.L., Munroe S.H. Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels. Nucleic Acids Res. 1997, 25:4296-4300.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4296-4300
    • Hastings, M.L.1    Milcarek, C.2    Martincic, K.3    Peterson, M.L.4    Munroe, S.H.5
  • 16
    • 0347416978 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast
    • He F., Li X., Spatrick P., Casillo R., Dong S., Jacobson A. Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast. Mol. Cell 2003, 12:1439-1452.
    • (2003) Mol. Cell , vol.12 , pp. 1439-1452
    • He, F.1    Li, X.2    Spatrick, P.3    Casillo, R.4    Dong, S.5    Jacobson, A.6
  • 17
    • 70249141564 scopus 로고    scopus 로고
    • Co-translational mRNA decay in Saccharomyces cerevisiae
    • Hu W., Sweet T.J., Chamnongpol S., Baker K.E., Coller J. Co-translational mRNA decay in Saccharomyces cerevisiae. Nature 2009, 461:225-229.
    • (2009) Nature , vol.461 , pp. 225-229
    • Hu, W.1    Sweet, T.J.2    Chamnongpol, S.3    Baker, K.E.4    Coller, J.5
  • 18
    • 70449953975 scopus 로고    scopus 로고
    • The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs
    • Jacquier A. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat. Rev. Genet. 2009, 10:833-844.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 833-844
    • Jacquier, A.1
  • 19
    • 24644488895 scopus 로고    scopus 로고
    • Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation
    • Jen C.H., Michalopoulos I., Westhead D.R., Meyer P. Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation. Genome Biol. 2005, 6:R51.
    • (2005) Genome Biol. , vol.6 , pp. R51
    • Jen, C.H.1    Michalopoulos, I.2    Westhead, D.R.3    Meyer, P.4
  • 20
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • Kapranov P., Willingham A.T., Gingeras T.R. Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 2007, 8:413-423.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 21
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcription in the mammalian transcriptome
    • RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group)Genome Science Group (Genome Network Project Core Group), FANTOM ConsortiumFANTOM Consortium
    • Katayama S., Tomaru Y., Kasukawa T., Waki K., Nakanishi M., Nakamura M., Nishida H., Yap C.C., Suzuki M., Kawai J., et al. Antisense transcription in the mammalian transcriptome. Science 2005, 309:1564-1566. RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group)Genome Science Group (Genome Network Project Core Group), FANTOM ConsortiumFANTOM Consortium.
    • (2005) Science , vol.309 , pp. 1564-1566
    • Katayama, S.1    Tomaru, Y.2    Kasukawa, T.3    Waki, K.4    Nakanishi, M.5    Nakamura, M.6    Nishida, H.7    Yap, C.C.8    Suzuki, M.9    Kawai, J.10
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 23
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
    • Lapidot M., Pilpel Y. Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep. 2006, 7:1216-1222.
    • (2006) EMBO Rep. , vol.7 , pp. 1216-1222
    • Lapidot, M.1    Pilpel, Y.2
  • 24
    • 50849129426 scopus 로고    scopus 로고
    • Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation
    • Li J.T., Zhang Y., Kong L., Liu Q.R., Wei L. Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation. Nucleic Acids Res. 2008, 36:4833-4844.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 4833-4844
    • Li, J.T.1    Zhang, Y.2    Kong, L.3    Liu, Q.R.4    Wei, L.5
  • 25
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 2011, 18:10-12.
    • (2011) EMBnet.journal , vol.18 , pp. 10-12
    • Martin, M.1
  • 26
    • 33749066576 scopus 로고    scopus 로고
    • Overlapping transcripts, double-stranded RNA and antisense regulation: a genomic perspective
    • Munroe S.H., Zhu J. Overlapping transcripts, double-stranded RNA and antisense regulation: a genomic perspective. Cell. Mol. Life Sci. 2006, 63:2102-2118.
    • (2006) Cell. Mol. Life Sci. , vol.63 , pp. 2102-2118
    • Munroe, S.H.1    Zhu, J.2
  • 29
    • 84887995915 scopus 로고    scopus 로고
    • Gene regulation by antisense transcription
    • Pelechano V., Steinmetz L.M. Gene regulation by antisense transcription. Nat. Rev. Genet. 2013, 14:880-893.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 880-893
    • Pelechano, V.1    Steinmetz, L.M.2
  • 30
    • 84877574893 scopus 로고    scopus 로고
    • Extensive transcriptional heterogeneity revealed by isoform profiling
    • Pelechano V., Wei W., Steinmetz L.M. Extensive transcriptional heterogeneity revealed by isoform profiling. Nature 2013, 497:127-131.
    • (2013) Nature , vol.497 , pp. 127-131
    • Pelechano, V.1    Wei, W.2    Steinmetz, L.M.3
  • 31
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • Ponting C.P., Oliver P.L., Reik W. Evolution and functions of long noncoding RNAs. Cell 2009, 136:629-641.
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 32
    • 0037173089 scopus 로고    scopus 로고
    • Transcriptional collision between convergent genes in budding yeast
    • Prescott E.M., Proudfoot N.J. Transcriptional collision between convergent genes in budding yeast. Proc. Natl. Acad. Sci. USA 2002, 99:8796-8801.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8796-8801
    • Prescott, E.M.1    Proudfoot, N.J.2
  • 33
    • 77953757597 scopus 로고    scopus 로고
    • An exonic splicing enhancer within a bidirectional coding sequence regulates alternative splicing of an antisense mRNA
    • Salato V.K., Rediske N.W., Zhang C., Hastings M.L., Munroe S.H. An exonic splicing enhancer within a bidirectional coding sequence regulates alternative splicing of an antisense mRNA. RNA Biol. 2010, 7:179-190.
    • (2010) RNA Biol. , vol.7 , pp. 179-190
    • Salato, V.K.1    Rediske, N.W.2    Zhang, C.3    Hastings, M.L.4    Munroe, S.H.5
  • 34
    • 42549092747 scopus 로고    scopus 로고
    • Overlapping genes in the human and mouse genomes
    • Sanna C.R., Li W.H., Zhang L. Overlapping genes in the human and mouse genomes. BMC Genomics 2008, 9:169.
    • (2008) BMC Genomics , vol.9 , pp. 169
    • Sanna, C.R.1    Li, W.H.2    Zhang, L.3
  • 35
    • 84861419478 scopus 로고    scopus 로고
    • Activation of 5'-3' exoribonuclease Xrn1 by cofactor Dcs1 is essential for mitochondrial function in yeast
    • Sinturel F., Bréchemier-Baey D., Kiledjian M., Condon C., Bénard L. Activation of 5'-3' exoribonuclease Xrn1 by cofactor Dcs1 is essential for mitochondrial function in yeast. Proc. Natl. Acad. Sci. USA 2012, 109:8264-8269.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 8264-8269
    • Sinturel, F.1    Bréchemier-Baey, D.2    Kiledjian, M.3    Condon, C.4    Bénard, L.5
  • 37
    • 84885359411 scopus 로고    scopus 로고
    • Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels
    • Sun M., Schwalb B., Pirkl N., Maier K.C., Schenk A., Failmezger H., Tresch A., Cramer P. Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels. Mol. Cell 2013, 52:52-62.
    • (2013) Mol. Cell , vol.52 , pp. 52-62
    • Sun, M.1    Schwalb, B.2    Pirkl, N.3    Maier, K.C.4    Schenk, A.5    Failmezger, H.6    Tresch, A.7    Cramer, P.8
  • 38
    • 84883377142 scopus 로고    scopus 로고
    • A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs
    • Tuck A.C., Tollervey D. A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs. Cell 2013, 154:996-1009.
    • (2013) Cell , vol.154 , pp. 996-1009
    • Tuck, A.C.1    Tollervey, D.2
  • 40
    • 24644448635 scopus 로고    scopus 로고
    • Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
    • Wang X.J., Gaasterland T., Chua N.H. Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol. 2005, 6:R30.
    • (2005) Genome Biol. , vol.6 , pp. R30
    • Wang, X.J.1    Gaasterland, T.2    Chua, N.H.3
  • 41
    • 84896692153 scopus 로고    scopus 로고
    • 3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae
    • Wang L., Jiang N., Wang L., Fang O., Leach L.J., Hu X., Luo Z. 3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae. PLoS Genet. 2014, 10:e1004021.
    • (2014) PLoS Genet. , vol.10 , pp. e1004021
    • Wang, L.1    Jiang, N.2    Wang, L.3    Fang, O.4    Leach, L.J.5    Hu, X.6    Luo, Z.7
  • 43
    • 0024117032 scopus 로고
    • Ribosome pausing and stacking during translation of a eukaryotic mRNA
    • Wolin S.L., Walter P. Ribosome pausing and stacking during translation of a eukaryotic mRNA. EMBO J. 1988, 7:3559-3569.
    • (1988) EMBO J. , vol.7 , pp. 3559-3569
    • Wolin, S.L.1    Walter, P.2
  • 45
    • 33746785696 scopus 로고    scopus 로고
    • Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species
    • Zhang Y., Liu X.S., Liu Q.R., Wei L. Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Res. 2006, 34:3465-3475.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 3465-3475
    • Zhang, Y.1    Liu, X.S.2    Liu, Q.R.3    Wei, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.