Estimation of multiexponential fluorescence decay parameters using compressive sensing

Journal of Biomedical Optics

Volumn 20, Issue 9, 2015, Pages

  Yang, Sejung ^a   Lee, Joohyun ^b   Lee, Youmin ^b   Lee, Minyung ^b   Lee, Byung Uk ^b  

^a Ewha Womans University   (South Korea)

^b Ewha Womans University   (South Korea)

Author keywords

compressive sensing; fluorescence decay parameters; fluorescence lifetime imaging microscopy; multiexponential decay

Indexed keywords

ALGORITHMS; BIOMEDICAL SIGNAL PROCESSING; COMPRESSED SENSING; FLUORESCENCE; IMAGING TECHNIQUES; POISSON DISTRIBUTION; SIGNAL RECONSTRUCTION;

COMPRESSIVE SENSING; FLUORESCENCE DECAYS; FLUORESCENCE LIFETIME IMAGING MICROSCOPY; FLUOROPHORE CONCENTRATION; FLUOROPHORE LIFETIMES; MULTI-EXPONENTIAL DECAY; SIGNAL DEPENDENT NOISE; SPARSE REPRESENTATION;

FLUOROPHORES;

FLUORESCENT DYE;

ALGORITHM; CHEMISTRY; COMPUTER SIMULATION; FLUORESCENCE MICROSCOPY; HELA CELL LINE; HUMAN; POISSON DISTRIBUTION; PROCEDURES; SIGNAL PROCESSING;

ALGORITHMS; COMPUTER SIMULATION; FLUORESCENT DYES; HELA CELLS; HUMANS; MICROSCOPY, FLUORESCENCE; POISSON DISTRIBUTION; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 84942694194     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.JBO.20.9.096003     Document Type: Article

References (27)

1. J. R. Lakowicz, Principles of Fluorescence Spectroscopy, Springer, New York (2006).
2. B. B. Collier and M. J. McShane, "Dynamic windowing algorithm for the fast and accurate determination of luminescence lifetimes," Anal. Chem. 84, 4725-4731 (2012).
3. M. Wahl, Technical Note on Time-correlated Single Photon Counting, PicoQuant GmbH, Berlin (2009).
4. Y. Won et al., "High-speed confocal fluorescence lifetime imaging microscopy (FLIM) with the analog mean delay (AMD) method," Opt. Express 19(4), 3396-3404 (2011).
5. M. C. Skala et al., "In vivo multiphoton microscopy of NADH and FAD redox states, fluorescence lifetimes, and cellular morphology in precancerous epithelia," Proc. Natl. Acad. Sci. U.S.A. 104(49), 19494-19499 (2007).
6. M. S. Roberts et al., "Non-invasive imaging of skin physiology and percutaneous penetration using fluorescence spectral and lifetime imaging with multiphoton and confocal microscopy," Eur. J. Pharm. Biopharm. 77, 469-488 (2011).
7. G. Deka, W. W. Wu, and F. J. Kao, "In vivo wound healing diagnosis with second harmonic and fluorescence lifetime imaging," J. Biomed. Opt. 18(6), 061222 (2013).
8. D. V. OConnor and D. Phillips, Time-Correlated Single Photon Counting, Academic Press, London (1984).
9. A. E. McKinnon, A. G. Szabo, and D. R. Millar, "The deconvolution of photoluminescence data," J. Phys. Chem. 81(16), 1564-1570 (1977).
10. D. V. OConnor, W. R. Ware, and J. C. Andre, "Deconvolution of fluorescence decay curves. A critical comparison of techniques," J. Phys. Chem. 83, 1333-1343 (1979).
11. J. R. Knutson, J. M. Beechem, and L. Brand, "Simultaneous analysis of multiple fluorescence decay curves: a global approach," Chem. Phys. Lett. 102(6), 501-507 (1983).
12. T. Hauschild and M. Jentschel, "Comparison of maximum likelihood estimation and chi-square statistics applied to counting experiments," Nucl. Instrum. Methods Phys. Res., Sect. A 457, 384-401 (2001).
13. K. Sasaki and H. Masuhara, "Analysis of transient emission curves by a convolved autoregressive model," Appl. Opt. 30(8), 977-980 (1991).
14. V. V. Apanasovich and E. G. Novikov Identification of lifetime characteristics in fluorescence experiments," Proc. SPIE 2388 378-384( 1995).
15. J. Enderlein and R. Erdmann, "Fast fitting of multiexponential decay curves," Opt Commun. 134, 371-378 (1997).
16. J. Kim and J. Seok, "Statistical properties of amplitude and decay parameter estimators for fluorescence lifetime imaging," Opt. Express 21(5), 6061-6074 (2013).
17. Z. T. Harmany, R. F. Marcia, and R. M. Willett, "This is SPIRAL-TAP: sparse Poisson intensity reconstruction algorithms-theory and practice," IEEE Trans. Image Process. 21(3), 1084-1096 (2012).
18. W. Becker, The bh TCSPC Handbook, 5th ed., Becker & Hickl GmbH, Berlin (2012).
19. D. L. Donoho, "Compressed sensing," IEEE Trans. Inf. Theory 52(4) 1289-1306 (2006).
20. E. J. Candes and T. Tao, "Decoding by linear programming," IEEE Trans. Inf. Theory 51(12), 4203-4215 (2006).
21. E. Candes, J. Romberg, and T. Tao, "Near-optimal signal recovery from random projection: universal encoding from highly incomplete frequency information," IEEE Trans. Inf. Theory 52(12), 5406-5425 (2006).
22. R. Willett and M. Raginsky, "Performance bounds for compressed sensing with Poisson noise," in Proc. IEEE Int. Symp. Information Theory, pp. 174-178, (2009).
23. M. Raginsky and Z. T. Harmany, "Compressed sensing performance bounds under Poisson noise," IEEE Trans. Signal Process. 58(8), 3990-4002 (2010).
24. N. S. Caron et al., "Using FLIM-FRET to measure conformational changes of transglutaminase type 2 in live cells," PLoS One 7(8), e44159 (2012).
25. B. Valeur and M. N. Berberan-Santos, Molecular Fluorescence Principles and Applications, Wiley-VCH, (2012).
26. C. A. Swindlehurst and E. W. Voss Jr., "Fluorescence measurements of immune complexes of Mab 4-4-20 with isomeric haptens," Biophys. J. 59, 619-628 (1991).
27. S. Santra et al., "Fluorescence lifetime measurements to determine the core-shell nanostructure of FITC-doped silica nanoparticles: an optical approach to evaluate nanoparticle photostability," J. Lumin. 117, 75-82 (2006).