Spatiotemporal trends in the discovery of new swine infectious agents

Veterinary Research

Volumn 46, Issue 1, 2015, Pages

  Fournié, Guillaume ^a   Kearsley Fleet, Lianne ^a   Otte, Joachim ^b   Pfeiffer, Dirk Udo ^a  

^a ROYAL VETERINARY COLLEGE   (United Kingdom)

^b FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BACTERIUM; CLASSIFICATION; EUKARYOTE; HOST RANGE; ISOLATION AND PURIFICATION; MICROBIOLOGY; PARASITOLOGY; PIG; SWINE DISEASE; VIROLOGY; VIRUS;

ANIMALS; BACTERIA; EUKARYOTA; HOST SPECIFICITY; SWINE; SWINE DISEASES; VIRUSES;

EID: 84942573366     PISSN: 09284249     EISSN: 12979716     Source Type: Journal    
DOI: 10.1186/s13567-015-0226-8     Document Type: Review

References (47)

1. FAOSTAT. http://faostat.fao.org/default.aspx?lang=en. Accessed 14 Jul 2014
2. Leibler JH, Otte J, Roland-Holst D, Pfeiffer DU, Soares Magalhaes R, Rushton J, Graham JP, Silbergeld EK (2009) Industrial food animal production and global health risks: exploring the ecosystems and economics of avian influenza. Ecohealth 6:58-70
3. Graham JP, Leibler JH, Price LB, Otte JM, Pfeiffer DU, Tiensin T, Silbergeld EK (2008) The animal-human interface and infectious disease in industrial food animal production: rethinking biosecurity and biocontainment. Public Health Rep 123:282-299
4. Rose N, Madec F (2002) Occurrence of respiratory disease outbreaks in fattening pigs: relation with the features of a densely and a sparsely populated pig area in France. Vet Res 33:179-190
5. Stegeman A, Bouma A, Elbers AR, de Jong MC, Nodelijk G, de Klerk F, Koch G, Van Boven M (2004) Avian influenza A virus (H7N7) epidemic in The Netherlands in 2003: course of the epidemic and effectiveness of control measures. J Infect Dis 190:2088-2095
6. Alarcon P, Rushton J, Wieland B (2013) Cost of post-weaning multi-systemic wasting syndrome and porcine circovirus type-2 subclinical infection in England - an economic disease model. Prev Vet Med 110:88-102
7. Neumann EJ, Kliebenstein JB, Johnson CD, Mabry JW, Bush EJ, Seitzinger AH, Green AL, Zimmerman JJ (2005) Assessment of the economic impact of porcine reproductive and respiratory syndrome on swine production in the United States. J Am Vet Med Assoc 227:385-392
8. Cleaveland S, Laurenson MK, Taylor LH (2001) Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Philos Trans R Soc Lond B Biol Sci 356:991-999
9. Jones KE, Patel NG, Levy MA, Storeygard A, Balk D, Gittleman JL, Daszak P (2008) Global trends in emerging infectious diseases. Nature 451:990-993
10. Woolhouse ME, Gowtage-Sequeria S (2005) Host range and emerging and reemerging pathogens. Emerg Infect Dis 11:1842-1847
11. Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y, Rambaut A (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459:1122-1125
12. Smith TC, Harper AL, Nair R, Wardyn SE, Hanson BM, Ferguson DD, Dressler AE (2011) Emerging swine zoonoses. Vector Borne Zoonotic Dis 11:1225-1234
13. GenBank. http://www.ncbi.nlm.nih.gov/genbank/. Accessed 10 Jul 2014
14. National Centre for Biotechnology Information. http://www.ncbi.nlm.nih.gov/. Accessed 10 Jul 2014
15. Committee on the Taxonomy of Viruses. http://ictvonline.org/virusTaxonomy.asp?version=2011. Accessed 10 Jul 2014
16. Quinn PJ, Markey BK, Leonard FC, Hartigan P, Fanning S, Fitzpatrick ES (2011) Veterinary microbiology and microbial disease. Wiley, New York
17. Straw BE, Zimmerman JJ, D'Allaire S, Taylor DJ (2006) Diseases of Swine. Wiley, New York
18. Elsheikha HM, Khan NA (2011) Essentials of Veterinary Parasitology. Caister Academic Press, Norfolk, UK
19. The World Bank Country and lending groups. http://data.worldbank.org/about/country-classifications/country-and-lending-groups#High-income. Accessed 14 Jul 2014
20. Aragon TJ (2012) epitools: Epidemiology Tools R package version 0.5-7. http://CRAN.R-project.org/package=epitools. Accessed 20 May 2015
21. R Core Team (2013) R: A Language and Environment for Statistical Computing. http://www.R-project.org/. Accessed 10 Jul 14
22. Laurin MA, Dastor M, L'Homme Y (2011) Detection and genetic characterization of a novel pig astrovirus: relationship to other astroviruses. Arch Virol 156:2095-2099
23. Wang QH, Han MG, Cheetham S, Souza M, Funk JA, Saif LJ (2005) Porcine noroviruses related to human noroviruses. Emerg Infect Dis 11:1874-1881
24. Banyai K, Martella V, Bogdan A, Forgach P, Jakab F, Meleg E, Biro H, Melegh B, Szucs G (2008) Genogroup I picobirnaviruses in pigs: evidence for genetic diversity and relatedness to human strains. J Gen Virol 89:534-539
25. Yang S, Zhang W, Shen Q, Huang F, Wang Y, Zhu J, Cui L, Yang Z, Hua X (2009) Molecular characterization and phylogenetic analysis of the complete genome of a porcine sapovirus from Chinese swine. Virol J 6:216
26. Belak S, Karlsson OE, Blomstrom AL, Berg M, Granberg F (2013) New viruses in veterinary medicine, detected by metagenomic approaches. Vet Microbiol 165:95-101
27. Lipkin WI (2013) The changing face of pathogen discovery and surveillance. Nat Rev Microbiol 11:133-141
28. Bates J, Jordens JZ, Griffiths DT (1994) Farm animals as a putative reservoir for vacomycin-resistant enterococcal infection in man. Antimicrob Agents Chemother 34:507-514
29. Segales J, Martinez-Guino L, Cortey M, Navarro N, Huerta E, Sibila M, Pujols J, Kekarainen T (2009) Retrospective study on swine Torque teno virus genogroups 1 and 2 infection from 1985 to 2005 in Spain. Vet Microbiol 134:199-207
30. Salazar-Schettino PM, Bucio MI, Cabrera M, Bautista J (1997) First case of natural infection in pigs. Review of Trypanosoma cruzi reservoirs in Mexico. Mem Inst Oswaldo Cruz 92:499-502
31. Woolhouse ME (2002) Population biology of emerging and re-emerging pathogens. Trends Microbiol 10:S3-S7
32. Thanapongtharm W, Linard C, Pamaranon N, Kawkalong S, Noimoh T, Chanachai K, Parakgamawongsa T, Gilbert M (2014) Spatial epidemiology of porcine reproductive and respiratory syndrome in Thailand. BMC Vet Res 10:174
33. Fraile L, Calsamiglia M, Mateu E, Espinal A, Cuxart A, Seminati C, Martin M, Domingo M, Segales J (2009) Prevalence of infection with porcine circovirus-2 (PCV-2) and porcine reproductive and respiratory syndrome virus (PRRSV) in an integrated swine production system experiencing postweaning multisystemic wasting syndrome. Can J Vet Res 73:308-312
34. Davies PR: One World, One Health (2012) The Threat of Emerging Swine Diseases. A North American Perspective. Transbound Emerg Dis 59:18-26
35. Springbett AJ, MacKenzie K, Woolliams JA, Bishop SC (2003) The contribution of genetic diversity to the spread of infectious diseases in livestock populations. Genetics 165:1465-1474
36. Williamson S, Strugnell B, Thomson J, Webster G, McOrist S, Clarke H (2013) Emergence of severe porcine epidemic diarrhoea in pigs in the USA. Vet Rec 173:146-148
37. Mole B (2013) Deadly pig virus slips through US borders. Nature 499:388
38. Nelson MI, Viboud C, Vincent AL, Culhane MR, Detmer SE, Wentworth DE, Rambaut A, Suchard MA, Holmes EC, Lemey P (2015) Global migration of influenza A viruses in swine. Nature Commun 6:6696
39. Drew TW (2011) The emergence and evolution of swine viral diseases: to what extent have husbandry systems and global trade contributed to their distribution and diversity? Rev Sci Tech 30:95-106
40. Galvani AP (2003) Epidemiology meets evolutionary ecology. Trends Ecol Evol 18:132-139
41. Mennerat A, Nilsen F, Ebert D, Skorping A (2010) Intensive Farming: Evolutionary Implications for Parasites and Pathogens. Evol Biol 37:59-67
42. Chua KB, Bellini WJ, Rota PA, Harcourt BH, Tamin A, Lam SK, Ksiazek TG, Rollin PE, Zaki SR, Shieh W, Goldsmith CS, Gubler DJ, Roehrig JT, Eaton B, Gould AR, Olson J, Field H, Daniels P, Ling AE, Peters CJ, Anderson LJ, Mahy BW (2000) Nipah virus: a recently emergent deadly paramyxovirus. Science 288:1432-1435
43. Pozio E, Owen IL, La Rosa G, Sacchi L, Rossi P, Corona S (1999) Trichinella papuae n.sp. (Nematoda), a new non-encapsulated species from domestic and sylvatic swine of Papua New Guinea. Int J Parasitol 29:1825-1839
44. Nelson MI, Gramer MR, Vincent AL, Holmes EC (2012) Global transmission of influenza viruses from humans to swine. J Gen Virol 93:2195-2203
45. Vincent A, Awada L, Brown I, Chen H, Claes F, Dauphin G, Donis R, Culhane M, Hamilton K, Lewis N, Mumford E, Nguyen T, Parchariyanon S, Pasick J, Pavade G, Pereda A, Peiris M, Saito T, Swenson S, Van Reeth K, Webby R, Wong F, Ciacci-Zanella J (2013) Review of influenza A virus in swine worldwide: a call for increased surveillance and research. Zoonoses Public Health 61:4-17
46. McOrist S, Khampee K, Guo A (2011) Modern pig farming in the People's Republic of China: growth and veterinary challenges. Rev Sci Tech 30:961-968
47. Pasick J, Berhane Y, Ojkic D, Maxie G, Embury-Hyatt C, Swekla K, Handel K, Fairles J, Alexandersen S (2014) Investigation into the role of potentially contaminated feed as a source of the first-detected outbreaks of porcine epidemic diarrhea in Canada. Transbound Emerg Dis 61:397-410