The chemical composition of native organic matter influences the response of bacterial community to input of biochar and fresh plant material

Plant and Soil

Volumn 395, Issue 1-2, 2015, Pages 87-104

  Wang, Congying ^a,b   Anderson, Craig ^c   Suárez Abelenda, Manuel ^d   Wang, Tao ^a   Camps Arbestain, Marta ^a   Ahmad, Riaz ^a,e   Herath, H M S K ^a,f  

^a MASSEY UNIVERSITY   (New Zealand)

^b SHANXI UNIVERSITY   (China)

^c THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

^d UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^e PMAS ARID AGRICULTURE UNIVERSITY   (Pakistan)

^f UVA WELLASSA UNIVERSITY   (Sri Lanka)

Author keywords

Bacterial community profile; Molecular composition; Organic amendments; Organic matter; Pyrolysis GC MS

Indexed keywords

ALFISOL; ANDISOL; BACTERIUM; CHARCOAL; CHEMICAL ANALYSIS; CHEMICAL COMPOSITION; COMMUNITY RESPONSE; COMMUNITY STRUCTURE; LEGUME; MAIZE; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; ORGANIC MATTER; PYROLYSIS; ROOT; SOIL AMENDMENT; SOIL ORGANIC MATTER; SOIL TYPE;

BACTERIA (MICROORGANISMS); MEDICAGO SATIVA; ZEA MAYS;

EID: 84942368122     PISSN: 0032079X     EISSN: 15735036     Source Type: Journal    
DOI: 10.1007/s11104-015-2621-3     Document Type: Article

References (64)

1. Bastida F, Kandeler E, Moreno JL, Ros M, García C, Hernández T (2008) Application of fresh and composted organic wastes modifies structure, size and activity of soil microbial community under semiarid climate. Appl Soil Ecol 40:318–329
2. Bending GD, Turner MK, Jones JE (2002) Interactions between crop residue and soil organic matter quality and the functional diversity of soil microbial communities. Soil Biol Biochem 34:1073–1082
3. Buurman P, Van Bergen PF, Jongmans A, Meijer EL, Duran B, Van Lagen B (2005) Spatial and temporal variation in podzol organic matter studied by pyrolysis‐gas chromatography/ mass spectrometry and micromorphology. Eur J Soil Sci 56:253–270
4. Buurman P, Peterse F, Almendros Martin G (2007) Soil organic matter chemistry in allophanic soils: a pyrolysis-GC/MS study of a Costa Rican Andosol catena. Eur J Soil Sci 58:1330–1347
5. Cardinale M, Brusetti L, Quatrini P, Borin S, Puglia AM, Rizzi, A, Zanardini E, Sorlini C, Corselli C, Daffonchio D (2004) Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities. Appl Environ Microbiol 70:6147–6156
6. Carson JK, Campbell L, Rooney D, Clipson N, Gleeson DB (2009) Minerals in soil select distinct bacterial communities in their microhabitats. FEMS Microbiol Ecol 67:381–388
7. Chevalier T, Woignier T, Toucet J, Blanchart E (2010) Organic carbon stabilization in the fractal pore structure of Andosols. Geoderma 159:182–188
8. Costanza R, d’Arge R, de Groot R, Farberk S, Grasso M, Hannon B, Limburg K, Naeem S, O’Neill RV, Paruelo J (1997) The value of the world’s ecosystem services and natural capital. Nature 387:253–260
9. Culman SW, Bukowski R, Gauch HG, Cadillo-Quiroz H, Buckley DH (2009) T-REX: software for the processing and analysis of T-RFLP data. BMC Bioinformatics 10:171
10. Diacono M, Montemurro F (2010) Long-term effects of organic amendments on soil fertility. A review. Agron Sustain Dev 30:401–422
11. Eglinton G, Hamilton RJ (1967) Leaf epicuticular waxes. Science 156:1322–1335
12. Elfstrand S, Båth B, Mårtensson A (2007) Influence of various forms of green manure amendment on soil microbial community composition, enzyme activity and nutrient levels in leek. Appl Soil Ecol 36:70–82
13. Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci U S A 103:626–631
14. Fierer N, Schimel JP, Holden PA (2003) Variations in microbial community composition through two soil depth profiles. Soil Biol Biochem 35:167–176
15. Fontaine S, Mariotti A, Abbadie L (2003) The priming effect of organic matter: a question of microbial competition? Soil Biol Biochem 35:837–843
16. Gomez E, Ferreras L, Toresani S (2006) Soil bacterial functional diversity as influenced by organic amendment application. Bioresour Technol 97:1484–1489
17. Gomez JD, Denef K, Stewart CE, Zheng J, Cotrufo MF (2014) Biochar addition rate influences soil microbial abundance and activity in temperate soils. Eur J Soil Sci 65:28–39
18. Goyal S, Chander K, Mundra MC, Kapoor KK (1999) Influence of inorganic fertilizers and organic amendments on soil organic matter and soil microbial properties under tropical conditions. Biol Fertil Soils 29:196–200
19. Grossman J, O’Neill B, Tsai S, Liang B, Neves E, Lehmann J, Thies J (2010) Amazonian anthrosols support similar microbial communities that differ distinctly from those extant in adjacent, unmodified soils of the same mineralogy. Microb Ecol 60:192–205
20. Hargreaves JC, Adl MS, Warman PR (2008) A review of the use of composted municipal solid waste in agriculture. Agric Ecosyst Environ 123:1–14
21. Havemann SA, Foster JS (2008) Comparative characterization of the microbial diversities of an artificial microbialite model and a natural stromatolite. Appl Environ Microbiol 74:7410–7421
22. Herath HMSK, Camps-Arbestain M, Hedley M (2013) Effect of biochar on soil physical properties in two contrasting soils: an Alfisol and an Andisol. Geoderma 209–210:188–197
23. Herath HMSK, Camps-Arbestain M, Hedley M, Van Hale R, Kaal J (2014a) Fate of biochar in chemically- and physically-defined soil organic carbon pools. Org Geochem 73:35–46
24. 2 emissions from original feedstock and protection of native soil organic matter. GCB Bioenergy. doi:10.1111/gcbb.12183
25. Jansen B, Nierop KGJ, Hageman JA, Cleef AM, Verstraten JM (2006) The straight-chain lipid biomarker composition of plant species responsible for the dominant biomass production along two altitudinal transects in the Ecuadorian Andes. Org Geochem 37:1514–1536
26. 13C CPMAS NMR in conjunction with a molecular mixing model of the Penido Vello peat deposit, NW Spain. Org Geochem 38:1097–1111
27. Kaal J, Martinez Cortizas A, Eckmeier E, Costa Casais M, Santos Estevez M, Boado C (2008) Holocene fire history of black colluvial soils revealed by pyrolysis-GC/MS: a case study from Campo Lameiro (NW Spain). J Archaeol Sci 3:2133–2143
28. Kaal J, Martínez Cortizas A, Nierop KG (2009) Characterisation of aged charcoal using a coil probe pyrolysis-GC/MS method optimised for black carbon. J Anal Appl Pyrolysis 85:408–416
29. Khodadad CLM, Zimmerman AR, Green SJ, Uthandi S, Foster JS (2011) Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments. Soil Biol Biochem 43:385–392
30. Kim J-S, Sparovek G, Longo RM, De Melo WJ, Crowley D (2007) Bacterial diversity of terra preta and pristine forest soil from the Western Amazon. Soil Biol Biochem 39:684–690
31. Kögel-Knabner I (2002) The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biol Biochem 34:139–162
32. Lehmann J, Gaunt J, Rondon M (2006) Bio-char sequestration in terrestrial ecosystems - a review. Mitig Adapt Strateg Glob Chang 11:395–419
33. Lehmann J, Rillig MC, Thies J, Masiello CA, Hockaday WC, Crowley D (2011) Biochar effects on soil biota - a review. Soil Biol Biochem 43:1812–1836
34. Lehmann J, Abiven S, Kleber M, Pan G, Singh BP, Sohi SP, Zimmerman AR (2015) Persistence of biochar in soil. Biochar for Environmental Management: Science, Technology and Implementation 233–280
35. Matsue N, Wada K (1985) A new equilibration method for cation-exchange capacity measurement. Soil Sci Soc Am J 49:574–578
36. Ng EL, Patti AF, Rose MT, Schefe CR, Wilkinson K, Smernik RJ, Cavagnaro TR (2014) Does the chemical nature of soil carbon drive the structure and functioning of soil microbial communities? Soil Biol Biochem 70:54–61
37. Nierop KGJ (1998) Origin of aliphatic compounds in a forest soil. Org Geochem 29:1009–1016
38. Nierop KGJ, Jansen B (2009) Extensive transformation of organic matter and excellent lipid preservation at the upper, superhumid Guandera páramo. Geoderma 151:357–369
39. 7 extractable organic matter in two allophanic volcanic ash soils of the Azores Islands - a pyrolysis GC/MS study. Geoderma 127:36–51
40. Nishiyama M, Sumikawa Y, Guan G, Marumoto T (2001) Relationship between microbial biomass and extractable organic carbon content in volcanic and non-volcanic ash soil. Appl Soil Ecol 17:183–187
41. Parfitt RL (2009) Allophane and imogolite: role in soil biogeochemical processes. Clay Miner 44:135–155
42. Poirier N, Sohi SP, Gaunt JL, Mahieu N, Randall EW, Powlson DS, Evershed RP (2005) The chemical composition of measurable soil organic matter pools. Org Geochem 36:1174–1189
43. Prayogo C, Jones J, Baeyens J, Bending G (2014) Impact of biochar on mineralisation of C and N from soil and willow litter and its relationship with microbial community biomass and structure. Biol Fertil Soils 50:695–702
44. Ramette A (2009) Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities. Appl Environ Microbiol 75:2495–2505
45. Raven AM, Van Bergen PF, Stott AW, Dudd SN, Evershed RP (1997) Formation of long-chain ketones in archaeological pottery vessels by pyrolysis of acyl lipids. J Anal Appl Pyrol 40:267–285
46. Ros M, Klammer S, Knapp B, Aichberger K, Insam H (2006) Long-term effects of compost amendment of soil on functional and structural diversity and microbial activity. Soil Use Manag 22:209–218
47. Rutigliano FA, Romano M, Marzaioli R, Baglivo I, Baronti S, Miglietta F, Castaldi S (2014) Effect of biochar addition on soil microbial community in a wheat crop. Eur J Soil Biol 60:9–15
48. Schellekens J, Buurman P, Pontevedra-Pombal X (2009) Selecting parameters for the environmental interpretation of peat molecular chemistry - A pyrolysis-GC/MS study. Org Geochem 40:678–691
49. Schulten HR, Plage B, Schnitzer M (1991) A chemical structure for humic substances. Naturwissenschaften 78:311–312. doi:10.1007/BF0122 1416
50. Schulten H-R, Sorge-Lewin C, Schnitzer M (1997) Structure of unknown soil nitrogen investigated by analytical pyrolysis. Biol Fertil Soils 24:249–254
51. Schutter M, Dick R (2001) Shifts in substrate utilization potential and structure of soil microbial communities in response to carbon substrates. Soil Biol Biochem 33:1481–1491
52. Stankiewicz BA, Briggs DE, Evershed RP (1997) Chemical composition of Paleozoic and Mesozoic fossil invertebrate cuticles as revealed by pyrolysis-gas chromatography/mass spectrometry. Energy Fuels 11:515–521
53. Stuczynski T, McCarty G, Reeves J, Wright R (1997) Use of pyrolysis GC/MS for assessing changes in soil organic matter quality. Soil Sci 162:97–105
54. Suárez-Abelenda M, Buurman P, Camps Arbestain M, Kaal J, Martinez-Cortizas A, Gartzia-Bengoetxea N, Macías F (2011) Comparing NaOH-extractable organic matter of acid forest soils that differ in their pedogenic trends: a pyrolysis-GC/MS study. Eur J Soil Sci 62:834–848
55. Suárez-Abelenda M, Kaal J, Camps-Arbestain M, Knicker H, Macías F (2014) Molecular characteristics of permanganate- and dichromate-oxidation-resistant soil organic matter from a black-C-rich colluvial soil. Soil Res 52:164–179
56. Suárez-Abelenda M, Ahmad R, Camps-Arbestain M, Herath HMSK (2015) Changes in the chemical composition of soil organic matter over time in the presence and absence of living roots: a pyrolysis GC/MS study. Plant Soil 391:161–177. doi:10.1007/s11104-015-2423-7
57. Tegelaar EW, De Leeuw JW, Sáiz-Jiménez C (1989) Possible origin of aliphatic moieties in humic substances. Sci Total Environ 81:1–17
58. Van Horn DJ, Van Horn ML, Barrett JE, Gooseff MN, Altrichter AE, Geyer KM, Zeglin LH, Takacs-Vesbach CD (2013) Factors controlling soil microbial biomass and bacterial diversity and community composition in a cold desert ecosystem: role of geographic scale. PLoS One 8:e66103. doi:10.1371/journal.pone.0066103
59. Wang T, Camps Arbestain M, Hedley M, Bishop P (2012) Chemical and bioassay characterisation of nitrogen availability in biochar produced from dairy manure and biosolids. Org Geochem 51:45–54
60. Wardle DA, Giller KE (1996) The quest for a contemporary ecological dimension to soil biology. Soil Biol Biochem 28:1549–1554
61. 13C PLFA analyses: results from a short-term incubation and pot experiment. Eur J Soil Sci 65:40–51
62. Zhou J, Xia B, Huang H, Treves DS, Hauser LJ, Mural RJ, Palumbo AV, Tiedje JM (2003) Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils. Soil Biol Biochem 35:915–924
63. Zhou J, Xia B, Treves DS, Wu L-Y, Marsh TL, O’Neill RV, Palumbo AV, Tiedje JM (2002) Spatial and resource factors influencing high microbial diversity in soil. Appl Environ Microbiol 68:326–334
64. Zimmerman AR, Gao B, Ahn M-Y (2011) Positive and negative carbon mineralization priming effects among a variety of biochar-amended soils. Soil Biol Biochem 43:1169–1179