-
1
-
-
84900839100
-
Setting limits: maintaining order in a large gene family
-
Abdus-Saboor I., Fleischmann A., Shykind B. Setting limits: maintaining order in a large gene family. Transcription 2014, 5:e28978.
-
(2014)
Transcription
, vol.5
, pp. e28978
-
-
Abdus-Saboor, I.1
Fleischmann, A.2
Shykind, B.3
-
2
-
-
33644521215
-
Automated cell lineage tracing in Caenorhabditis elegans
-
Bao Z., Murray J.I., Boyle T., Ooi S.L., Sandel M.J., Waterston R.H. Automated cell lineage tracing in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 2006, 103:2707-2712.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 2707-2712
-
-
Bao, Z.1
Murray, J.I.2
Boyle, T.3
Ooi, S.L.4
Sandel, M.J.5
Waterston, R.H.6
-
3
-
-
83055180178
-
Predicting mutation outcome from early stochastic variation in genetic interaction partners
-
Burga A., Casanueva M.O., Lehner B. Predicting mutation outcome from early stochastic variation in genetic interaction partners. Nature 2011, 480:250-253.
-
(2011)
Nature
, vol.480
, pp. 250-253
-
-
Burga, A.1
Casanueva, M.O.2
Lehner, B.3
-
4
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang H.H., Hemberg M., Barahona M., Ingber D.E., Huang S. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 2008, 453:544-547.
-
(2008)
Nature
, vol.453
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
5
-
-
84870885923
-
Embryonic priming of a miRNA locus predetermines postmitotic neuronal left/right asymmetry in C. elegans
-
Cochella L., Hobert O. Embryonic priming of a miRNA locus predetermines postmitotic neuronal left/right asymmetry in C. elegans. Cell 2012, 151:1229-1242.
-
(2012)
Cell
, vol.151
, pp. 1229-1242
-
-
Cochella, L.1
Hobert, O.2
-
6
-
-
84892740091
-
De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis
-
Du Z., Santella A., He F., Tiongson M., Bao Z. De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis. Cell 2014, 156:359-372.
-
(2014)
Cell
, vol.156
, pp. 359-372
-
-
Du, Z.1
Santella, A.2
He, F.3
Tiongson, M.4
Bao, Z.5
-
7
-
-
84922599068
-
E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis
-
Du Z., He F., Yu Z., Bowerman B., Bao Z. E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis. Dev. Biol. 2015, 398:267-279.
-
(2015)
Dev. Biol.
, vol.398
, pp. 267-279
-
-
Du, Z.1
He, F.2
Yu, Z.3
Bowerman, B.4
Bao, Z.5
-
8
-
-
65349097905
-
Stem cell states, fates, and the rules of attraction
-
Enver T., Pera M., Peterson C., Andrews P.W. Stem cell states, fates, and the rules of attraction. Cell Stem Cell 2009, 4:387-397.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 387-397
-
-
Enver, T.1
Pera, M.2
Peterson, C.3
Andrews, P.W.4
-
9
-
-
70049108481
-
A model of sequential branching in hierarchical cell fate determination
-
Foster D.V., Foster J.G., Huang S., Kauffman S.A. A model of sequential branching in hierarchical cell fate determination. J. Theor. Biol. 2009, 260:589-597.
-
(2009)
J. Theor. Biol.
, vol.260
, pp. 589-597
-
-
Foster, D.V.1
Foster, J.G.2
Huang, S.3
Kauffman, S.A.4
-
10
-
-
18844460377
-
The myogenic potency of HLH-1 reveals wide-spread developmental plasticity in early C. elegans embryos
-
Fukushige T., Krause M. The myogenic potency of HLH-1 reveals wide-spread developmental plasticity in early C. elegans embryos. Development 2005, 132:1795-1805.
-
(2005)
Development
, vol.132
, pp. 1795-1805
-
-
Fukushige, T.1
Krause, M.2
-
11
-
-
79955549678
-
A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue
-
Green R.A., Kao H.L., Audhya A., Arur S., Mayers J.R., Fridolfsson H.N., Schulman M., Schloissnig S., Niessen S., Laband K., et al. A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue. Cell 2011, 145:470-482.
-
(2011)
Cell
, vol.145
, pp. 470-482
-
-
Green, R.A.1
Kao, H.L.2
Audhya, A.3
Arur, S.4
Mayers, J.R.5
Fridolfsson, H.N.6
Schulman, M.7
Schloissnig, S.8
Niessen, S.9
Laband, K.10
-
12
-
-
23844494458
-
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis
-
Gunsalus K.C., Ge H., Schetter A.J., Goldberg D.S., Han J.D., Hao T., Berriz G.F., Bertin N., Huang J., Chuang L.S., et al. Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. Nature 2005, 436:861-865.
-
(2005)
Nature
, vol.436
, pp. 861-865
-
-
Gunsalus, K.C.1
Ge, H.2
Schetter, A.J.3
Goldberg, D.S.4
Han, J.D.5
Hao, T.6
Berriz, G.F.7
Bertin, N.8
Huang, J.9
Chuang, L.S.10
-
13
-
-
84891752160
-
WormBase 2014: new views of curated biology
-
Harris T.W., Baran J., Bieri T., Cabunoc A., Chan J., Chen W.J., Davis P., Done J., Grove C., Howe K., et al. WormBase 2014: new views of curated biology. Nucleic Acids Res. 2014, 42:D789-D793.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D789-D793
-
-
Harris, T.W.1
Baran, J.2
Bieri, T.3
Cabunoc, A.4
Chan, J.5
Chen, W.J.6
Davis, P.7
Done, J.8
Grove, C.9
Howe, K.10
-
14
-
-
84925497456
-
Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer
-
Hashimshony T., Feder M., Levin M., Hall B.K., Yanai I. Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. Nature 2015, 519:219-222.
-
(2015)
Nature
, vol.519
, pp. 219-222
-
-
Hashimshony, T.1
Feder, M.2
Levin, M.3
Hall, B.K.4
Yanai, I.5
-
15
-
-
0019067386
-
Isolation and genetic characterization of cell-lineage mutants of the nematode Caenorhabditis elegans
-
Horvitz H.R., Sulston J.E. Isolation and genetic characterization of cell-lineage mutants of the nematode Caenorhabditis elegans. Genetics 1980, 96:435-454.
-
(1980)
Genetics
, vol.96
, pp. 435-454
-
-
Horvitz, H.R.1
Sulston, J.E.2
-
16
-
-
18144408736
-
Cell fates as high-dimensional attractor states of a complex gene regulatory network
-
Huang S., Eichler G., Bar-Yam Y., Ingber D.E. Cell fates as high-dimensional attractor states of a complex gene regulatory network. Phys. Rev. Lett. 2005, 94:128701.
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 128701
-
-
Huang, S.1
Eichler, G.2
Bar-Yam, Y.3
Ingber, D.E.4
-
17
-
-
0028343269
-
Glp-1 and inductions establishing embryonic axes in C. elegans
-
Hutter H., Schnabel R. glp-1 and inductions establishing embryonic axes in C. elegans. Development 1994, 120:2051-2064.
-
(1994)
Development
, vol.120
, pp. 2051-2064
-
-
Hutter, H.1
Schnabel, R.2
-
18
-
-
0028788288
-
Establishment of left-right asymmetry in the Caenorhabditis elegans embryo: a multistep process involving a series of inductive events
-
Hutter H., Schnabel R. Establishment of left-right asymmetry in the Caenorhabditis elegans embryo: a multistep process involving a series of inductive events. Development 1995, 121:3417-3424.
-
(1995)
Development
, vol.121
, pp. 3417-3424
-
-
Hutter, H.1
Schnabel, R.2
-
19
-
-
56449123775
-
Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy
-
Keller P.J., Schmidt A.D., Wittbrodt J., Stelzer E.H. Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 2008, 322:1065-1069.
-
(2008)
Science
, vol.322
, pp. 1065-1069
-
-
Keller, P.J.1
Schmidt, A.D.2
Wittbrodt, J.3
Stelzer, E.H.4
-
20
-
-
84888090217
-
Temporal fate specification and neural progenitor competence during development
-
Kohwi M., Doe C.Q. Temporal fate specification and neural progenitor competence during development. Nat. Rev. Neurosci. 2013, 14:823-838.
-
(2013)
Nat. Rev. Neurosci.
, vol.14
, pp. 823-838
-
-
Kohwi, M.1
Doe, C.Q.2
-
21
-
-
57349128823
-
Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration
-
McMahon A., Supatto W., Fraser S.E., Stathopoulos A. Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration. Science 2008, 322:1546-1550.
-
(2008)
Science
, vol.322
, pp. 1546-1550
-
-
McMahon, A.1
Supatto, W.2
Fraser, S.E.3
Stathopoulos, A.4
-
22
-
-
84880257814
-
Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis
-
Moore J.L., Du Z., Bao Z. Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis. Development 2013, 140:3266-3274.
-
(2013)
Development
, vol.140
, pp. 3266-3274
-
-
Moore, J.L.1
Du, Z.2
Bao, Z.3
-
23
-
-
84908431507
-
Dissecting engineered cell types and enhancing cell fate conversion via CellNet
-
Morris S.A., Cahan P., Li H., Zhao A.M., San Roman A.K., Shivdasani R.A., Collins J.J., Daley G.Q. Dissecting engineered cell types and enhancing cell fate conversion via CellNet. Cell 2014, 158:889-902.
-
(2014)
Cell
, vol.158
, pp. 889-902
-
-
Morris, S.A.1
Cahan, P.2
Li, H.3
Zhao, A.M.4
San Roman, A.K.5
Shivdasani, R.A.6
Collins, J.J.7
Daley, G.Q.8
-
24
-
-
84455208056
-
Replication-coupled chromatin assembly generates a neuronal bilateral asymmetry in C. elegans
-
Nakano S., Stillman B., Horvitz H.R. Replication-coupled chromatin assembly generates a neuronal bilateral asymmetry in C. elegans. Cell 2011, 147:1525-1536.
-
(2011)
Cell
, vol.147
, pp. 1525-1536
-
-
Nakano, S.1
Stillman, B.2
Horvitz, H.R.3
-
25
-
-
19944377195
-
The REF-1 family of bHLH transcription factors pattern C. elegans embryos through Notch-dependent and Notch-independent pathways
-
Neves A., Priess J.R. The REF-1 family of bHLH transcription factors pattern C. elegans embryos through Notch-dependent and Notch-independent pathways. Dev. Cell 2005, 8:867-879.
-
(2005)
Dev. Cell
, vol.8
, pp. 867-879
-
-
Neves, A.1
Priess, J.R.2
-
26
-
-
38549150868
-
Notch signaling in the C. elegans embryo
-
Priess J.R. Notch signaling in the C. elegans embryo. WormBook 2005, 1-16.
-
(2005)
WormBook
, pp. 1-16
-
-
Priess, J.R.1
-
27
-
-
77249114260
-
Variability in gene expression underlies incomplete penetrance
-
Raj A., Rifkin S.A., Andersen E., van Oudenaarden A. Variability in gene expression underlies incomplete penetrance. Nature 2010, 463:913-918.
-
(2010)
Nature
, vol.463
, pp. 913-918
-
-
Raj, A.1
Rifkin, S.A.2
Andersen, E.3
van Oudenaarden, A.4
-
28
-
-
78649367847
-
A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D
-
Santella A., Du Z., Nowotschin S., Hadjantonakis A.K., Bao Z. A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. BMC Bioinformatics 2010, 11:580.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 580
-
-
Santella, A.1
Du, Z.2
Nowotschin, S.3
Hadjantonakis, A.K.4
Bao, Z.5
-
29
-
-
84902930332
-
A semi-local neighborhood-based framework for probabilistic cell lineage tracing
-
Santella A., Du Z., Bao Z. A semi-local neighborhood-based framework for probabilistic cell lineage tracing. BMC Bioinformatics 2014, 15:217.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 217
-
-
Santella, A.1
Du, Z.2
Bao, Z.3
-
30
-
-
15844431376
-
Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans
-
Sönnichsen B., Koski L.B., Walsh A., Marschall P., Neumann B., Brehm M., Alleaume A.M., Artelt J., Bettencourt P., Cassin E., et al. Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature 2005, 434:462-469.
-
(2005)
Nature
, vol.434
, pp. 462-469
-
-
Sönnichsen, B.1
Koski, L.B.2
Walsh, A.3
Marschall, P.4
Neumann, B.5
Brehm, M.6
Alleaume, A.M.7
Artelt, J.8
Bettencourt, P.9
Cassin, E.10
-
31
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
Trapnell C., Cacchiarelli D., Grimsby J., Pokharel P., Li S., Morse M., Lennon N.J., Livak K.J., Mikkelsen T.S., Rinn J.L. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol. 2014, 32:381-386.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
Pokharel, P.4
Li, S.5
Morse, M.6
Lennon, N.J.7
Livak, K.J.8
Mikkelsen, T.S.9
Rinn, J.L.10
-
32
-
-
84900529199
-
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
-
Treutlein B., Brownfield D.G., Wu A.R., Neff N.F., Mantalas G.L., Espinoza F.H., Desai T.J., Krasnow M.A., Quake S.R. Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature 2014, 509:371-375.
-
(2014)
Nature
, vol.509
, pp. 371-375
-
-
Treutlein, B.1
Brownfield, D.G.2
Wu, A.R.3
Neff, N.F.4
Mantalas, G.L.5
Espinoza, F.H.6
Desai, T.J.7
Krasnow, M.A.8
Quake, S.R.9
-
33
-
-
84908409740
-
Quantitative imaging of cell dynamics in mouse embryos using light-sheet microscopy
-
Udan R.S., Piazza V.G., Hsu C.W., Hadjantonakis A.K., Dickinson M.E. Quantitative imaging of cell dynamics in mouse embryos using light-sheet microscopy. Development 2014, 141:4406-4414.
-
(2014)
Development
, vol.141
, pp. 4406-4414
-
-
Udan, R.S.1
Piazza, V.G.2
Hsu, C.W.3
Hadjantonakis, A.K.4
Dickinson, M.E.5
-
34
-
-
10644219506
-
Multiple Wnt signaling pathways converge to orient the mitotic spindle in early C. elegans embryos
-
Walston T., Tuskey C., Edgar L., Hawkins N., Ellis G., Bowerman B., Wood W., Hardin J. Multiple Wnt signaling pathways converge to orient the mitotic spindle in early C. elegans embryos. Dev. Cell 2004, 7:831-841.
-
(2004)
Dev. Cell
, vol.7
, pp. 831-841
-
-
Walston, T.1
Tuskey, C.2
Edgar, L.3
Hawkins, N.4
Ellis, G.5
Bowerman, B.6
Wood, W.7
Hardin, J.8
-
35
-
-
84887415312
-
Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy
-
Wu Y., Wawrzusin P., Senseney J., Fischer R.S., Christensen R., Santella A., York A.G., Winter P.W., Waterman C.M., Bao Z., et al. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nat. Biotechnol. 2013, 31:1032-1038.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1032-1038
-
-
Wu, Y.1
Wawrzusin, P.2
Senseney, J.3
Fischer, R.S.4
Christensen, R.5
Santella, A.6
York, A.G.7
Winter, P.W.8
Waterman, C.M.9
Bao, Z.10
-
36
-
-
84876939667
-
Specified neural progenitors sort to form sharp domains after noisy Shh signaling
-
Xiong F., Tentner A.R., Huang P., Gelas A., Mosaliganti K.R., Souhait L., Rannou N., Swinburne I.A., Obholzer N.D., Cowgill P.D., et al. Specified neural progenitors sort to form sharp domains after noisy Shh signaling. Cell 2013, 153:550-561.
-
(2013)
Cell
, vol.153
, pp. 550-561
-
-
Xiong, F.1
Tentner, A.R.2
Huang, P.3
Gelas, A.4
Mosaliganti, K.R.5
Souhait, L.6
Rannou, N.7
Swinburne, I.A.8
Obholzer, N.D.9
Cowgill, P.D.10
-
37
-
-
65549161255
-
The polycomb complex protein mes-2/E(z) promotes the transition from developmental plasticity to differentiation in C. elegans embryos
-
Yuzyuk T., Fakhouri T.H., Kiefer J., Mango S.E. The polycomb complex protein mes-2/E(z) promotes the transition from developmental plasticity to differentiation in C. elegans embryos. Dev. Cell 2009, 16:699-710.
-
(2009)
Dev. Cell
, vol.16
, pp. 699-710
-
-
Yuzyuk, T.1
Fakhouri, T.H.2
Kiefer, J.3
Mango, S.E.4
-
38
-
-
84883821113
-
Eddy current and coupled landscapes for nonadiabatic and nonequilibrium complex system dynamics
-
Zhang K., Sasai M., Wang J. Eddy current and coupled landscapes for nonadiabatic and nonequilibrium complex system dynamics. Proc. Natl. Acad. Sci. USA 2013, 110:14930-14935.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 14930-14935
-
-
Zhang, K.1
Sasai, M.2
Wang, J.3
-
39
-
-
79151474239
-
Understanding gene circuits at cell-fate branch points for rational cell reprogramming
-
Zhou J.X., Huang S. Understanding gene circuits at cell-fate branch points for rational cell reprogramming. Trends Genet. 2011, 27:55-62.
-
(2011)
Trends Genet.
, vol.27
, pp. 55-62
-
-
Zhou, J.X.1
Huang, S.2
-
40
-
-
0032535755
-
Reprogramming of early embryonic blastomeres into endodermal progenitors by a Caenorhabditis elegans GATA factor
-
Zhu J., Fukushige T., McGhee J.D., Rothman J.H. Reprogramming of early embryonic blastomeres into endodermal progenitors by a Caenorhabditis elegans GATA factor. Genes Dev. 1998, 12:3809-3814.
-
(1998)
Genes Dev.
, vol.12
, pp. 3809-3814
-
-
Zhu, J.1
Fukushige, T.2
McGhee, J.D.3
Rothman, J.H.4
|