HIV Transmission Patterns among Immigrant Latinos Illuminated by the Integration of Phylogenetic and Migration Data

AIDS Research and Human Retroviruses

Volumn 31, Issue 10, 2015, Pages 973-980

  Dennis, Ann M ^a   Hué, Stéphane ^b   Pasquale, Dana ^c   Napravnik, Sonia ^a,c   Sebastian, Joseph ^d   Miller, William C ^a,c   Eron, Joseph J ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE   (United Kingdom)

^c University of North Carolina at Chapel Hill   (United States)

^d LABORATORY CORPORATION OF AMERICA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA; POL PROTEIN;

ADULT; AGED; ARTICLE; CD4 LYMPHOCYTE COUNT; CODON; CONTROLLED STUDY; CROSS-SECTIONAL STUDY; FEMALE; HETEROSEXUALITY; HISPANIC; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; IMMIGRANT; IMMIGRATION; MAJOR CLINICAL STUDY; MALE; MAXIMUM LIKELIHOOD METHOD; MEDICAL RECORD REVIEW; MEN WHO HAVE SEX WITH MEN; MEXICAN; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; UNITED STATES; VIRUS LOAD; VIRUS TRANSMISSION; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; EPIDEMIOLOGY; GENETICS; GENOTYPE; HIGH RISK BEHAVIOR; ISOLATION AND PURIFICATION; MIGRANT; MOLECULAR EPIDEMIOLOGY; SEXUAL BEHAVIOR; TRANSMISSION; VIROLOGY; YOUNG ADULT;

ADULT; CLUSTER ANALYSIS; CROSS-SECTIONAL STUDIES; EMIGRANTS AND IMMIGRANTS; FEMALE; GENOTYPE; HISPANIC AMERICANS; HIV; HIV INFECTIONS; HUMANS; MALE; MOLECULAR EPIDEMIOLOGY; PHYLOGENY; POL GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; RISK-TAKING; SEQUENCE ANALYSIS, DNA; SEXUAL BEHAVIOR; UNITED STATES; YOUNG ADULT;

EID: 84941957423     PISSN: 08892229     EISSN: 19318405     Source Type: Journal    
DOI: 10.1089/aid.2015.0089     Document Type: Article

References (28)

1. Pew Hispanic Center: Statistical Profiles of the Hispanics in the United States, 2011. Available from www.pewhispanic .org/2013/02/15/statistical-portrait-of-hispanics-in-The-unitedstates-2011/. Accessed September 10, 2013.
2. Prejean J, Song R, Hernandez A, et al.: Estimated HIV incidence in the United States, 2006-2009. PLoS One 2011;6(8): e17502.
3. Kochhar R, Suro R, and Tafoya S: The New Latino South: The Context and Consequences of Rapid Population Growth. Pew Hispanic Center, Washington, DC, 2005.
4. United States Census Bureau: 2010 Census Briefs: The Hispanic Population. Issued May 2011. Available from www.census.gov/prod/cen2010/briefs/c2010br-04.pdf. Accessed September 10, 2013.
5. North Carolina Department of Health and Human Services: 1999 STD Surveillance Report: Available from www.epi .state.nc.us/epi/hiv. Accessed March 27, 2011.
6. North Carolina Department of Health and Human Services: Epidemiologic Profile for HIV/STD Prevention &Care Planning: Available from www.epi.state.nc.us/epi/hiv/. Published December 2010. Accessed March 27, 2011.
7. Dennis AM, Wheeler JB, Valera E, et al.: HIV risk behaviors and sociodemographic features of HIV-infected Latinos residing in a new Latino settlement area in the Southeastern United States. AIDS Care 2013;25:1-10.
8. Dennis AM, Napravnik S, Sena AC, and Eron JJ: Late entry to HIV care among Latinos compared with non-Latinos in a Southeastern US cohort. Clin Infect Dis 2011;53(5): 480-487.
9. Magis-Rodriguez C, Lemp G, Hernandez MT, et al.: Mexican migrants and their vulnerability to HIV. J Acquir Immune Defic Syndr 2009;51(Suppl 1):S21-25.
10. Prosser AT, Tang T, and Hall HI: HIV in persons born outside the United States, 2007-2010. JAMA 2012;308(6):601-607.
11. Dennis AM, Hue S, Hurt CB, et al.: Phylogenetic insights into regional HIV transmission. AIDS 2012;26(14): 1813-1822.
12. Pond SLK, Posada D, Stawiski E, et al.: An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. PLoS Comp Biol 2009;5(11):e1000581.
13. Bennett DE, Camacho RJ, Otelea D, et al.: drug resistance mutations for surveillance of transmitted HIV-1 drugresistance: 2009 update. PLoS One 2009;4(3):e4724.
14. Edgar RC:MUSCLE:Multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 2004;32(5): 1792-1797.
15. Hall T: BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 98/98/ NT. Nucl Acids Symp Ser 1999;41:95-98.
16. Price MN, Dehal PS, and Arkin AP: FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 2009;26(7):1641-1650.
17. Deng W, Nickle DC, Learn GH, et al.: ViroBLAST: A stand-aloneBLAST web server for flexible queries ofmultiple databases and user's datasets. Bioinformatics 2007;23(17): 2334-2336.
18. Stamatakis A: RAxML-VI-HPC: Maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006;22(21):2688-2690.
19. Oster AM, Russell K, Wiegand RE, et al.: HIV infection and testing among Latino men who have sex with men in the United States: The role of location of birth and other social determinants. PLoS One 2013;8(9):e73779.
20. Diaz R, Ayala G, Bein E, et al.: The impact of homophobia, poverty, and racism on the mental health of gay and bisexual Latino men: Findings from 3 US cities. Am J Public Health 2001;91(6):927-932.
21. Garland JM, Andrade AS, and Page KR: Unique aspects of the care of HIV-positive Latino patients living in the United States. Curr HIV/AIDS Rep 2010;7(3):107-116.
22. Centers for Disease Control and Prevention: HIV Surveillance Report, 2011; Vol. 23. Available from www.cdc.gov/ hiv/topics/surveillance/resources/reports/. Published February 2013. Accessed January 14, 2014.
23. Kramer MA, Cornelissen M, Paraskevis D, et al.: HIV transmission patterns among The Netherlands, Suriname, and The Netherlands Antilles: A molecular epidemiological study. AIDS Res Hum Retroviruses 2010;27(2):123-130.
24. Schulter E, Oette M, Balduin M, et al.: HIV prevalence and route of transmission in Turkish immigrants living in North-Rhine Westphalia, Germany. Med Microbiol Immunol 2011;200:219-223.
25. Ansari AA, Mayne AE, Takahashi Y, and Pattanapanyasat K: Incorporation of innate immune effector mechanisms in the formulation of a vaccine against HIV-1. Adv Exp Med Biol 2011;780:143-159.
26. Gonzalez-Alba JM, Holguin A , Garcia R, et al.: Molecular surveillance of HIV-1 in Madrid, Spain: A phylogeographic analysis. J Virol 2011;85(20):10755-10763.
27. De Gascun CF, Waters A, Regan CM, et al.: Human immunodeficiency virus type 1 in Ireland: Phylogenetic evidence for risk group-specific subepidemics. AIDS Res Hum Retroviruses 2012;28(9):1073-1081.
28. Parczewski M, Leszczyszyn-Pynka M, Bander D, et al.: HIV-1 subtype D infections among caucasians from Northwestern Poland-phylogenetic and clinical analysis. PLoS One 2012;7(2):e31674.