Flux measurements and maintenance energy for carbon dioxide utilization by Methanococcus maripaludis

Microbial Cell Factories

Volumn 14, Issue 1, 2015, Pages

  Goyal, Nishu ^a   Padhiary, Mrutyunjay ^a   Karimi, Iftekhar A ^a   Zhou, Zhi ^a,b  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b PURDUE UNIVERSITY   (United States)

Author keywords

CO2< inf> utilization; Extracellular fluxes; Hydrogenotrophic methanogen; M. maripaludis; Maintenance energy

Indexed keywords

ADENOSINE TRIPHOSPHATE; ALANINE; AMINO ACID; CARBON DIOXIDE; HYDROGEN; METHANE;

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; CARBON DIOXIDE TRANSPORT; CARBON DIOXIDE UTILIZATION; CHEMICAL PARAMETERS; CONTROLLED STUDY; ENERGY YIELD; GROWTH ASSOCIATED MAINTENANCE; METABOLISM; METHANOCOCCUS MARIPALUDIS; METHANOGEN; METHANOGENESIS; NONGROWTH ASSOCIATED MAINTENANCE; NONHUMAN; BATCH CELL CULTURE; ENERGY METABOLISM; GROWTH, DEVELOPMENT AND AGING; METHANOCOCCUS;

ADENOSINE TRIPHOSPHATE; BATCH CELL CULTURE TECHNIQUES; CARBON DIOXIDE; ENERGY METABOLISM; HYDROGEN; METHANE; METHANOCOCCUS;

EID: 84941790250     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-015-0336-z     Document Type: Article

References (37)

1. Wei W, Jinlong G. Methanation of carbon dioxide: an overview. Front Chem Sci Eng. 2011;5:2-10.
2. Saini R, Kapoor R, Kumar R, Siddiqi TO, Kumar A. CO2 utilizing microbes-a comprehensive review. Biotechnol Adv. 2011;29:949-60.
3. Jones W, Donnelly M, Wolfe R. Evidence of a common pathway of carbon dioxide reduction to methane in methanogens. J Bacteriol. 1985;163:126-31.
4. Jones WJ, Paynter MJB, Gupta R. Characterization of Methanococcus maripaludis sp. nov., a new methanogen isolated from salt marsh sediment. Arch Microbiol. 1983;135:91-7.
5. Kessler PS, Daniel C, Leigh JA. Ammonia switch-off of nitrogen fixation in the methanogenic archaeon Methanococcus maripaludis: mechanistic features and requirement for the novel GlnB homologues, Nif I(1) and NifI(2). J Bacteriol. 2001;183:882-9.
6. Lupa B, Hendrickson EL, Leigh JA, Whitman WB. Formate-dependent H2 production by the mesophilic methanogen Methanococcus maripaludis. Appl Environ Microbiol. 2008;74:6584-90.
7. Kessler PS, Leigh JA. Genetics of nitrogen regulation in Methanococcus maripaludis. Genetics. 1999;152:1343-51.
8. Kessler PS, McLarnan J, Leigh JA. Nitrogenase phylogeny and the molybdenum dependence of nitrogen fixation in Methanococcus maripaludis. J Bacteriol. 1997;179:541-3.
9. Pires J, Alvim-Ferraz M, Martins F, Simões M. Carbon dioxide capture from flue gases using microalgae: engineering aspects and biorefinery concept. Renew Sustain Energy Rev. 2012;16:3043-53.
10. Price ND, Reed JL, Palsson BO. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat Rev Microbiol. 2004;2:886-97.
11. Zupke C, Stephanopoulos G. Intracellular flux analysis in hybridomas using mass balances and in vitro 13C NMR. Biotechnol Bioeng. 1995;45:292-303.
12. Wiechert W. Metabolic flux determination by stationary 13C tracer experiments: analysis of sensitivity, identifiability and redundancy. In: Doležal J, Fidler J, editors. System modelling and optimization. USA: Springer; 1996. p. 128-35 (IFIP-The International Federation for Information Processing).
13. Goyal N, Widiastuti H, Karimi IA, Zhou Z. Genome-scale metabolic model of Methanococcus maripaludis S2 for CO2 capture and conversion to methane. Mol BioSyst. 2014;10:1043-54.
14. Kral TA, Brink KM, Miller SL, McKay CP. Hydrogen consumption by methanogens on the early earth. Orig Life Evol Biosph. 1998;28:311-9.
15. Feist AM, Scholten JCM, Palsson BØ, Brockman FJ, Ideker T. Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. Mol Syst Biol. 2006;2. doi: 10.1038/msb4100046 .
16. Taylor GT, Pirt SJ. Nutrition and factors limiting the growth of a methanogenic bacterium (Methanobacterium thermoautotrophicum). Arch Microbiol. 1977;113:17-22.
17. Woese CR, Magrum LJ, Fox GE. Archaebacteria. J Mol Evol. 1978;11:29-30.
18. Smith MR, Mah RA. Growth and methanogenesis by Methanosarcina strain 227 on acetate and methanol. Appl Environ Microbiol. 1978;36:870-9.
19. Weimer P, Zeikus J. One carbon metabolism in methanogenic bacteria. Arch Microbiol. 1978;119:49-57.
20. Pauss A, Andre G, Perrier M, Guiot SR. Liquid-to-gas mass transfer in anaerobic processes: inevitable transfer limitations of methane and hydrogen in the biomethanation process. Appl Environ Microbiol. 1990;56:1636-44.
21. Rozendal RA, Hamelers HV, Buisman CJ. Effects of membrane cation transport on pH and microbial fuel cell performance. Environ Sci Technol. 2006;40:5206-11.
22. Rozendal RA, Hamelers HV, Molenkamp RJ, Buisman CJ. Performance of single chamber biocatalyzed electrolysis with different types of ion exchange membranes. Water Res. 2007;41:1984-94.
23. Verduyn C, Stouthamer AH, Scheffers WA, Dijken JP. A theoretical evaluation of growth yields of yeasts. Antonie Van Leeuwenhoek. 1991;59:49-63.
24. Kates M, Kushner DJ, Matheson A. The biochemistry of archaea (archaebacteria). Amsterdam: Elsevier; 1993.
25. Kaster A-K, Moll J, Parey K, Thauer RK. Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea. Proc Natl Acad Sci. 2011;108:2981-6.
26. Whitman WB, Sohn S, Kuk S, Xing R. Role of amino acids and vitamins in nutrition of mesophilic Methanococcus spp. Appl Environ Microbiol. 1987;53:2373-8.
27. Wang B, Li Y, Wu N, Lan CQ. CO2 bio-mitigation using microalgae. Appl Microbiol Biotechnol. 2008;79:707-18.
28. Yang YL, Glushka JN, Whitman WB. Intracellular pyruvate flux in the methane-producing archaeon Methanococcus maripaludis. Arch Microbiol. 2002;178:493-8.
29. Leigh JA. Nitrogen fixation in methanogens: the archaeal perspective. Curr Issues Mol Biol. 2000;2:125-31.
30. Whitman WB, Shieh J, Sohn S, Caras DS, Premachandran U. Isolation and characterization of 22 mesophilic methanococci. Syst Appl Microbiol. 1986;7:235-40.
31. Burlington MA. HYSYS, ASPEN. A user guide manual. Aspen Technology. 2006.
32. Roberton A, Wolfe R. Adenosine triphosphate pools in Methanobacterium. J Bacteriol. 1970;102:43-51.
33. Zehnder AJB, Wuhrmann K. Physiology of a Methanobacterium strain Az. Arch Microbiol. 1977;111:199-205.
34. Schauer NL, Ferry JG. Metabolism of formate in Methanobacterium formicicum. J Bacteriol. 1980;142:800-7.
35. Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol. 2007;3. doi: 10.1038/msb4100155.
36. Oliveira AP, Nielsen J, Förster J. Modeling Lactococcus lactis using a genome-scale flux model. BMC Microbiol. 2005;5:39.
37. Benedict MN, Gonnerman MC, Metcalf WW, Price ND. Genome-scale metabolic reconstruction and hypothesis testing in the methanogenic archaeon Methanosarcina acetivorans C2A. J Bacteriol. 2012;194:855-65.