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Volumn 31, Issue 15, 2015, Pages 2497-2504

Assessing allele-specific expression across multiple tissues from RNA-seq read data

Author keywords

[No Author keywords available]

Indexed keywords

ECM1 PROTEIN, HUMAN; ISOPROTEIN; RNA; SCLEROPROTEIN;

EID: 84941725069     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv074     Document Type: Article
Times cited : (53)

References (27)
  • 1
    • 56349112904 scopus 로고    scopus 로고
    • Global survey of genomic imprinting by transcriptome sequencing
    • Babak, T. et al. (2008) Global survey of genomic imprinting by transcriptome sequencing. Curr. Biol., 18, 1735-1741.
    • (2008) Curr. Biol. , vol.18 , pp. 1735-1741
    • Babak, T.1
  • 2
    • 78651015947 scopus 로고
    • The comparison of percentages in matched samples
    • Cochran, W. G. (1950) The comparison of percentages in matched samples. Biometrika, 37, 256-266.
    • (1950) Biometrika , vol.37 , pp. 256-266
    • Cochran, W.G.1
  • 3
    • 70349910898 scopus 로고    scopus 로고
    • Effect of read-mapping biases on detecting allelespecific expression from RNA-sequencing data
    • Degner, J. F. et al. (2009) Effect of read-mapping biases on detecting allelespecific expression from RNA-sequencing data. Bioinformatics, 25, 3207-3212.
    • (2009) Bioinformatics , vol.25 , pp. 3207-3212
    • Degner, J.F.1
  • 4
    • 69949176863 scopus 로고    scopus 로고
    • Common regulatory variation impacts gene expression in a cell type-dependent manner
    • Dimas, A. S. et al. (2009) Common regulatory variation impacts gene expression in a cell type-dependent manner. Science, 325, 1246-1250.
    • (2009) Science , vol.325 , pp. 1246-1250
    • Dimas, A.S.1
  • 5
    • 84878476783 scopus 로고    scopus 로고
    • A statistical framework for joint eQTL analysis in multiple tissues
    • Flutre, T. et al. (2013) A statistical framework for joint eQTL analysis in multiple tissues. PLoS Genet., 9, e1003486.
    • (2013) PLoS Genet. , vol.9 , pp. e1003486
    • Flutre, T.1
  • 6
    • 84866871814 scopus 로고    scopus 로고
    • Mapping cis- and trans-regulatory effects across multiple tissues in twins
    • Grundberg, E. et al. (2012) Mapping cis- and trans-regulatory effects across multiple tissues in twins. Nat. Genet., 44, 1084-1089.
    • (2012) Nat. Genet. , vol.44 , pp. 1084-1089
    • Grundberg, E.1
  • 7
    • 84878682420 scopus 로고    scopus 로고
    • The genotype-tissue expression (GTEx) project
    • GTEx-Consortium (2013) The genotype-tissue expression (GTEx) project. Nat. Genet., 45, 580-585.
    • (2013) Nat. Genet. , vol.45 , pp. 580-585
  • 8
    • 84879055641 scopus 로고    scopus 로고
    • Passive and active DNA methylation and the interplay with genetic variation in gene regulation
    • Gutierrez-Arcelus, M. et al (2013) Passive and active DNA methylation and the interplay with genetic variation in gene regulation. eLife, 2:e00523.
    • (2013) ELife , vol.2 , pp. e00523
    • Gutierrez-Arcelus, M.1
  • 9
    • 0036454821 scopus 로고    scopus 로고
    • Lipoid proteinosis
    • Hamada, T. (2002) Lipoid proteinosis. Clin. Exp. Dermatol., 27, 624-629.
    • (2002) Clin. Exp. Dermatol. , vol.27 , pp. 624-629
    • Hamada, T.1
  • 10
    • 0037338135 scopus 로고    scopus 로고
    • Extracellular matrix protein 1 gene (ECM1) mutations in lipoid proteinosis and genotype-phenotype correlation
    • Hamada, T. et al. (2003) Extracellular matrix protein 1 gene (ECM1) mutations in lipoid proteinosis and genotype-phenotype correlation. J. Invest. Dermatol., 120, 34-350.
    • (2003) J. Invest. Dermatol. , vol.120 , pp. 34-350
    • Hamada, T.1
  • 11
    • 0041876133 scopus 로고    scopus 로고
    • Measuring inconsistency in meta-analyses
    • Higgins, J. P. et al. (2003) Measuring inconsistency in meta-analyses. BMJ, 327, 557-560.
    • (2003) BMJ , vol.327 , pp. 557-560
    • Higgins, J.P.1
  • 12
    • 84901624486 scopus 로고    scopus 로고
    • Allelic expression of deleterious protein-coding variants across human tissues
    • Kukurba, K. R. et al. (2014) Allelic expression of deleterious protein-coding variants across human tissues. PLoS Genet., 10, e1004304.
    • (2014) PLoS Genet. , vol.10 , pp. e1004304
    • Kukurba, K.R.1
  • 13
    • 84885645853 scopus 로고    scopus 로고
    • Transcriptome and genome sequencing uncovers functional variation in humans
    • Lappalainen, T. et al. (2013) Transcriptome and genome sequencing uncovers functional variation in humans. Nature, 501, 506-511.
    • (2013) Nature , vol.501 , pp. 506-511
    • Lappalainen, T.1
  • 14
    • 35548950947 scopus 로고    scopus 로고
    • The efficiency of nonsense-mediated mRNA decay is an inherent character and varies among different cells
    • Linde, L. et al. (2007) The efficiency of nonsense-mediated mRNA decay is an inherent character and varies among different cells. Eur. J. Hum. Genet., 15, 1156-1167.
    • (2007) Eur. J. Hum. Genet. , vol.15 , pp. 1156-1167
    • Linde, L.1
  • 15
    • 84863116742 scopus 로고    scopus 로고
    • A systematic survey of loss-of-function variants in human protein-coding genes
    • MacArthur, D. G. et al. (2012) A systematic survey of loss-of-function variants in human protein-coding genes. Science, 335, 823-828.
    • (2012) Science , vol.335 , pp. 823-828
    • MacArthur, D.G.1
  • 16
    • 50449091647 scopus 로고    scopus 로고
    • Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease
    • McCarroll, S. A. et al. (2008) Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease. Nat. Genet., 40, 1107-1112.
    • (2008) Nat. Genet. , vol.40 , pp. 1107-1112
    • McCarroll, S.A.1
  • 17
    • 77950458649 scopus 로고    scopus 로고
    • Transcriptome genetics using second generation sequencing in a Caucasian population
    • Montgomery, S. B. et al. (2010) Transcriptome genetics using second generation sequencing in a Caucasian population. Nature, 464, 773-777.
    • (2010) Nature , vol.464 , pp. 773-777
    • Montgomery, S.B.1
  • 18
    • 79960946869 scopus 로고    scopus 로고
    • Rare and common regulatory variation in population-scale sequenced human genomes
    • Montgomery, S. B. et al. (2011) Rare and common regulatory variation in population-scale sequenced human genomes. PLoS Genet., 7, e1002144.
    • (2011) PLoS Genet. , vol.7 , pp. e1002144
    • Montgomery, S.B.1
  • 19
    • 84964313016 scopus 로고    scopus 로고
    • Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies
    • Panousis, N. I. et al. (2014) Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies. Genome Biol., 15, 467.
    • (2014) Genome Biol. , vol.15 , pp. 467
    • Panousis, N.I.1
  • 20
    • 77950460661 scopus 로고    scopus 로고
    • Understanding mechanisms underlying human gene expression variation with RNA sequencing
    • Pickrell, J. K. et al. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature, 464, 768-772.
    • (2010) Nature , vol.464 , pp. 768-772
    • Pickrell, J.K.1
  • 21
    • 80054975975 scopus 로고    scopus 로고
    • Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease
    • Rivas, M. A. et al. (2011) Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease. Nat. Genet., 43, 1066-1073.
    • (2011) Nat. Genet. , vol.43 , pp. 1066-1073
    • Rivas, M.A.1
  • 22
    • 84897368044 scopus 로고    scopus 로고
    • Assessing association between protein truncating variants and quantitative traits
    • Rivas, M. A. et al. (2013) Assessing association between protein truncating variants and quantitative traits. Bioinformatics, 29, 2419-2426.
    • (2013) Bioinformatics , vol.29 , pp. 2419-2426
    • Rivas, M.A.1
  • 23
    • 14644432534 scopus 로고    scopus 로고
    • Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
    • Ronald, J. et al. (2005) Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays. Genome Res., 15, 284-291.
    • (2005) Genome Res. , vol.15 , pp. 284-291
    • Ronald, J.1
  • 24
    • 80053522581 scopus 로고    scopus 로고
    • A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
    • Skelly, D. A. et al. (2011) A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data. Genome Res., 21, 1728-1737.
    • (2011) Genome Res. , vol.21 , pp. 1728-1737
    • Skelly, D.A.1
  • 25
    • 84856753476 scopus 로고    scopus 로고
    • A statistical framework for eQTL mapping using RNA-seq data
    • Sun, W. (2012) A statistical framework for eQTL mapping using RNA-seq data. Biometrics, 68, 1-11.
    • (2012) Biometrics , vol.68 , pp. 1-11
    • Sun, W.1
  • 26
    • 68349089152 scopus 로고    scopus 로고
    • Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human
    • Zhang, K. et al. (2009) Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human. Nat. Methods, 6, 613-618.
    • (2009) Nat. Methods , vol.6 , pp. 613-618
    • Zhang, K.1
  • 27
    • 84893378179 scopus 로고    scopus 로고
    • Searching for missing heritability: Designing rare variant association studies
    • Zuk, O. et al. (2014) Searching for missing heritability: Designing rare variant association studies. PNAS, 111, E455-E464.
    • (2014) PNAS , vol.111 , pp. E455-E464
    • Zuk, O.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.