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Volumn 68, Issue 1, 2012, Pages 1-11

A Statistical Framework for eQTL Mapping Using RNA-seq Data

Author keywords

Allele specific expression (ASE); EQTL; RNA seq; Total read count (TReC)

Indexed keywords

DNA SEQUENCES; GENE ENCODING; GENE EXPRESSION; MAPPING; MICROARRAYS;

EID: 84856753476     PISSN: 0006341X     EISSN: 15410420     Source Type: Journal    
DOI: 10.1111/j.1541-0420.2011.01654.x     Document Type: Article
Times cited : (108)

References (29)
  • 2
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem, R. B., Yvert, G., Clinton, R., and Kruglyak, L. (2002). Genetic dissection of transcriptional regulation in budding yeast. Science 296, 752-755.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 3
  • 4
    • 67849118749 scopus 로고    scopus 로고
    • Expression quantitative trait loci mapping with multivariate sparse partial least squares regression
    • Chun, H. and Keles, S. (2009). Expression quantitative trait loci mapping with multivariate sparse partial least squares regression. Genetics 182, 79-90.
    • (2009) Genetics , vol.182 , pp. 79-90
    • Chun, H.1    Keles, S.2
  • 6
    • 0040606893 scopus 로고
    • Testing for overdispersion in Poisson and binomial regression models
    • Dean, C. (1992). Testing for overdispersion in Poisson and binomial regression models. Journal of the American Statistical Association 87, 451-457.
    • (1992) Journal of the American Statistical Association , vol.87 , pp. 451-457
    • Dean, C.1
  • 7
    • 19844366096 scopus 로고    scopus 로고
    • Cis-acting expression quantitative trait loci in mice
    • Doss, S., Schadt, E., Drake, T., and Lusis, A. (2005). Cis-acting expression quantitative trait loci in mice. Genome Research 15, 681-691.
    • (2005) Genome Research , vol.15 , pp. 681-691
    • Doss, S.1    Schadt, E.2    Drake, T.3    Lusis, A.4
  • 10
    • 36749015726 scopus 로고    scopus 로고
    • Proximity model for expression quantitative trait loci (eQTL) detection
    • Gelfond, J., Ibrahim, J., and Zou, F. (2007). Proximity model for expression quantitative trait loci (eQTL) detection. Biometrics 63, 1108-1116.
    • (2007) Biometrics , vol.63 , pp. 1108-1116
    • Gelfond, J.1    Ibrahim, J.2    Zou, F.3
  • 11
    • 0015824327 scopus 로고
    • Maximum likelihood estimation for the beta-binomial distribution and an application to the household distribution of the total number of cases of a disease
    • Griffiths, D. (1973). Maximum likelihood estimation for the beta-binomial distribution and an application to the household distribution of the total number of cases of a disease. Biometrics 29, 637-648.
    • (1973) Biometrics , vol.29 , pp. 637-648
    • Griffiths, D.1
  • 12
    • 34548573179 scopus 로고    scopus 로고
    • Mapping quantitative trait loci for expression abundance
    • Jia, Z. and Xu, S. (2007). Mapping quantitative trait loci for expression abundance. Genetics 176, 611-623.
    • (2007) Genetics , vol.176 , pp. 611-623
    • Jia, Z.1    Xu, S.2
  • 13
    • 33745220961 scopus 로고    scopus 로고
    • A review of statistical methods for expression quantitative trait loci mapping
    • Kendziorski, C. and Wang, P. (2006). A review of statistical methods for expression quantitative trait loci mapping. Mammalian genome 17, 509-517.
    • (2006) Mammalian genome , vol.17 , pp. 509-517
    • Kendziorski, C.1    Wang, P.2
  • 14
    • 33645068841 scopus 로고    scopus 로고
    • Statistical methods for expression quantitative trait loci (eQTL) mapping
    • Kendziorski, C., Chen, M., Yuan, M., Lan, H., and Attie, A. (2006). Statistical methods for expression quantitative trait loci (eQTL) mapping. Biometrics 62, 19-27.
    • (2006) Biometrics , vol.62 , pp. 19-27
    • Kendziorski, C.1    Chen, M.2    Yuan, M.3    Lan, H.4    Attie, A.5
  • 18
    • 65649099694 scopus 로고    scopus 로고
    • Network-based multiple locus linkage analysis of expression traits
    • Pan, W. (2009). Network-based multiple locus linkage analysis of expression traits. Bioinformatics 25, 1390-1396.
    • (2009) Bioinformatics , vol.25 , pp. 1390-1396
    • Pan, W.1
  • 19
    • 77954763156 scopus 로고    scopus 로고
    • Genome-wide allele-specific analysis: Insights into regulatory variation
    • Pastinen, T. (2010). Genome-wide allele-specific analysis: Insights into regulatory variation. Nature Reviews Genetics 11, 533-538.
    • (2010) Nature Reviews Genetics , vol.11 , pp. 533-538
    • Pastinen, T.1
  • 21
  • 22
    • 48949094754 scopus 로고    scopus 로고
    • Local regulatory variation inSaccharomyces cerevisiae
    • Ronald, J., Brem, R., Whittle, J., and Kruglyak, L. (2005). Local regulatory variation inSaccharomyces cerevisiae. PLoS Genet 1, e25.
    • (2005) PLoS Genet , vol.1
    • Ronald, J.1    Brem, R.2    Whittle, J.3    Kruglyak, L.4
  • 23
    • 0345822598 scopus 로고    scopus 로고
    • The positive false discovery rate: A Bayesian interpretation and the q-value
    • Storey, J. (2003). The positive false discovery rate: A Bayesian interpretation and the q-value. The Annals of Statistics 31, 2013-2035.
    • (2003) The Annals of Statistics , vol.31 , pp. 2013-2035
    • Storey, J.1
  • 24
    • 77956644615 scopus 로고    scopus 로고
    • Genomewide multiple-loci mapping in experimental crosses by iterative adaptive penalized regression
    • Sun, W., Ibrahim, J., and Zou, F. (2010). Genomewide multiple-loci mapping in experimental crosses by iterative adaptive penalized regression. Genetics 185, 349-359.
    • (2010) Genetics , vol.185 , pp. 349-359
    • Sun, W.1    Ibrahim, J.2    Zou, F.3
  • 26
    • 78651276230 scopus 로고    scopus 로고
    • Allele-specific DNA methylation: Beyond imprinting
    • Tycko, B. (2010). Allele-specific DNA methylation: Beyond imprinting. Human Molecular Genetics 19, R210-R220.
    • (2010) Human Molecular Genetics , vol.19
    • Tycko, B.1
  • 27
    • 57749195712 scopus 로고    scopus 로고
    • Rna-seq: A revolutionary tool for transcriptomics
    • Wang, Z., Gerstein, M., and Snyder, M. (2009). Rna-seq: A revolutionary tool for transcriptomics. Nature Reviews Genetics 10, 57-63.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 28
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • Wittkopp, P., Haerum, B., and Clark, A. (2004). Evolutionary changes in cis and trans gene regulation. Nature 430, 85-88.
    • (2004) Nature , vol.430 , pp. 85-88
    • Wittkopp, P.1    Haerum, B.2    Clark, A.3
  • 29
    • 77951610155 scopus 로고    scopus 로고
    • Genetic analysis of variation in transcription factor binding in yeast
    • Zheng, W., Zhao, H., Mancera, E., Steinmetz, L., and Snyder, M. (2010). Genetic analysis of variation in transcription factor binding in yeast. Nature 464, 1187-1191.
    • (2010) Nature , vol.464 , pp. 1187-1191
    • Zheng, W.1    Zhao, H.2    Mancera, E.3    Steinmetz, L.4    Snyder, M.5


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