A model-based mediator system for scientific data management

Bioinformatics: Managing Scientific Data

Volumn , Issue , 2003, Pages 335-370

  Ludäscher, Bertram ^a   Gupta, Amarnath ^a   Martone, Maryann E ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84941264225     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-155860829-0/50014-0     Document Type: Chapter

References (51)

1. Papakonstantinou Y., Gupta A., Haas L.M. Capabilities-Based Query Rewriting in Mediator Systems. Distributed and Parallel Databases 1998, 6(no. 1):73-110.
2. Li C., Yemeni R., Vassalos V., et al. Capability Based Mediation in TSIMMIS. Proceedings of the ACM International Conference on Management of Data (SIGMOD) 1998, 564-566.
3. National Partnership for Computational Infrastructure (NPACI): Neuroscience Thrust Area, 2001. http://www.npaci.edu/Thrusts/Neuro/.
4. Biomedical Informatics Research Network Coordinating Center (BIRN-CC). University of California, San Diego, http://nbirn.net/', 2001.
5. Kashyap V., Sheth A. Semantic and Schematic Similarities Between Database Objects: A Context-Based Approach. VLDB Journal 1996, 5(no. 4):276-304.
6. Calvanese D., Giacomo G.D., Lenzerini M., et al. Description Logic Framework for Information Integration. Proceedings of the Sixth International Conference on Principles of Knowledge Representation and Reasoning (KR'98) 1998, 2-13. Morgan Kaufmann.
7. Bozdagi O., Shan W., Tanaka H., et al. Increasing Numbers of Synaptic Puncta During Late-Phase LTP: N-Cadherin is Synthesized Recruited to Synaptic Sites and Required for Potentiation. Neuron 2000, 28(no. 1):245-259.
8. Kasahara J., Fukunaga K., Miyamoto E. Activation of Calcium/ Calmodulin-Dependent Protein Kinase IV in Long Term Potentiation in the Rat Hippocampal CA1 Region. Journal of Biological Chemistry 2001, 276(no. 26):24044-24050.
9. Gupta A., Ludäscher B., Martone M.E. An Extensible Model-Based Mediator System with Domain Maps. Demonstration Session of the 21st International Conference on Data Engineering (ICDE) 2001, Heidelberg, Germany.
10. Chakravarthy S., Grant J., Minker J. Logic-Based Approach to Semantic Query Optimization. ACM Transactions on Database Systems (TODS) 1990, 15(no. 2):162-207.
11. Ludäscher B., Papakonstantinou Y., Velikhov P. Navigation-Driven Evaluation of Virtual Mediated Views. Proceedings of the International Conference on Extending Database Technology (EDBT) 2000, 150-165. Lecture Notes in Computer Science 1777, Springer.
12. Papakonstantinou Y., Vassalos V. The Enosys Markets Data Integration Platform: Lessons from the Trenches. International Conference on Information and Knowledge Management (CIKM) 2001.
13. Gupta A., Ludäscher B., Martone M.E. Registering Scientific Information Sources for Semantic Mediation. 21st International Conference on Conceptual Modeling (ER) 2002, Lecture Notes in Computer Science 2503. Springer.
14. Martone M.E., Gupta A., Wong M., et al. A Cell-Centered Database for Electron Tomographie Data. Journal of Structural Biology 2002, 138:145-155. http://ncmir.ucsd.edu/CCDB/.
15. Artale A., Franconi E., Guarino N., et al. Part-Whole Relations in Object-Centered Systems: An Overview. Data and Knowledge Engineering 1996, 20:347-383.
16. Mitra P., Wiederhold G., Kersten M.L. A Graph-Oriented Model for Articulation of Ontology Interdependencies. Proceedings of the International Conference on Extending Database Technology (EDBT) 2000, 86-100.
17. Horrocks I.R. Using an Expressive Description Logic: FaCT or Fiction?. KR'98: Principles of Knowledge Representation and Reasoning 1998, 636-645. Morgan Kaufmann, San Francisco. A.G. Cohn, L. Schubert, S.C. Shapiro (Eds.).
18. Ludäscher B., Gupta A., Martone M.E. Model-Based Mediation with Domain Maps. Proceedings of the 17th International Conference on Data Engineering (ICDE) 2001, IEEE Computer Society, New York.
19. Calvanese D., Giacomo G.D., Lenzerini M., et al. Description Logic Framework for Information Integration. Principles of Knowledge Representation and Reasoning 1998, 2-13.
20. Ludäscher B., Gupta A., Martone M.E. Model-Based Mediation with Domain Maps. Proceedings of the 17th International Conference on Data Engineering (ICDE) 2001, 81-90. IEEE Computer Society, New York.
21. Kifer M., Lausen G., Wu J. Logical Foundations of Object-Oriented and Frame-Based Languages. Journal of the ACM 1995, 42(no. 4):741-843. July.
22. FLORA homepage, http://www.cs.sunysb.edu/~sbprolog/flora/.
23. FLORID homepage, http://www.informatik.uni-freiberg.de/~dbis/florid/.
24. Ludäscher B., Gupta A., Martone M.E. Model-Based Information Integration in a Neuroscience Mediator System. Proceedings of the 26th International Conference on Very Large Data Bases (VLDB) 2000, 639-642. Morgan Kaufmann, San Francisco.
25. Himmeröder R., Lausen G., Ludäscher B., et al. FLORID: A DOOD-System for Querying the Web. Demonstration Session at EDBT 1998, Valencia, Spain.
26. Ludäscher B., Himmeröder R., Lausen G., et al. Managing Semistructured Data with FLORID: A Deductive Object-Oriented Perspective. Information Systems 1998, 23(no. 8):589-613.
27. Lausen G., Ludäscher B., May W. On Active Deductive Databases: The Statelog Approach. Transactions and Change in Logic Databases 1998, 69-106. Lecture Notes in Computer Science 1472, Springer. B. Freitag, H. Decker, M. Kifer (Eds.).
28. Kifer M., Lausen G., Wu J. Logical Foundations of Object-Oriented and Frame-Based Languages. journal of the ACM 1995, 42(no. 4):741-843. July.
29. Qian X., Ludäscher B., Martone M.E., et al. Navigating Virtual Information Sources with Know-ME. EDBT 2002, 739-741. Lecture Notes in Computer Science 2287.
30. Ludäscher B., Gupta A., Martone M.E. Model-Based Information Integration in a Neuroscience Mediator System. Proceedings of the 26th International Conference on Very Large Data Bases (VLDB) 2000, 639-642. Morgan Kaufmann, San Francisco.
31. Yang G., Kifer M. FLORA: Implementing an Efficient DOOD System Using a Tabling Logic Engine. Sixth International Conference on Rules and Objects in Databases (DOOD) 2002.
32. Draxler C. A Powerful Prolog to SQL Compiler 1992, technical report, Centre for Information and Language Processing, Ludwigs- Maximillians-Universität München, München, Germany.
33. Ludäscher B. Mediator Query Processing with Prolog Technology. technical note, BIRN-DI-TN-2002-01 2002, Biomedical Informatics Research Network.
34. Sagonas K.F., Swift T., Warren D.S. XSB as an Efficient Deductive Database Engine. Proceedings of the ACM International Conference on Management of Data (SIGMOD) 1994, 442-453.
35. Zaslavsky I. A New Technology for Interactive Online Mapping. Cartographic Perspectives 2000, 37:65-77.
36. Paxinos G., Watson C. The Rat Brain in Stereotaxic Coordinates 1998, Academic Press, San Diego.
37. Gupta A., Ludäscher B., Martone M.E., et al. A System for Managing Alternate Models in Model-Based Mediation. Advances in Databases, 19th British National Conference on Databases (BNCOD 19) 2002, Lecture notes in Computer Science 2405. Springer.
38. Martone M.E., Gupta A., Ludäscher B., et al. Federation of Brain Data through Knowledge-Guided Mediation. Neuroscience Databases: A Practical Guide 2002, 275-292. Kluwer Academic Publishers, Boston. R. Kötter (Ed.).
39. Garcia-Molina H., Papakonstantinou Y., Quass D., et al. The TSIMMIS Approach to Mediation: Data Models and Languages. Next Generation Information Technologies and Systems 1995, (Extended Abstract).
40. Knoblock C.A., Minton S., Ambite J.L., et al. Modeling Web Sources for Information Integration. Proceedings of the Fifteenth National Conference on Artificial Intelligence 1998.
41. Levy A.Y., Rajaraman A., Ordille J.J. Querying Heterogeneous Information Sources Using Source Descriptions. Proceedings of the International Conference on Very Large Data Bases (VLDB) 1996, 251-262.
42. Haas L.M., Kossmann D., Wimmers E.L., et al. Optimizing Queries Across Diverse Data Sources. Proceedings of the International Conference on Very Large Data Bases (VLDB) 1997, 276-285.
43. Baru C., Gupta A., Ludäscher B., et al. XML-Based Information Mediation with MIX. Proceedings of the ACM SIGMOD International Conference on Management of Data (SIGMOD 1999) 1999, 597-599. ACM Press, Philadelphia.
44. Palopoli L., Terracina G., Ursino D. The System DIKE: Towards the Semi-Automatic Synthesis of Cooperative Information Systems and Data Warehouses. Proceedings of the ADBIS-DASFAA Symposium 2000, 108-117.
45. Beneventano D., Bergamaschi S. Extensional Knowledge for Semantic Query Optimization in a Mediator-Based System. International Workshop on Foundations of Models for Information Integration (FMII-2001) 2001.
46. Bergamaschi S., Castano S., Vincini M. Semantic Integration of Semistructured and Structured Data Sources. SIGMOD Record 1999, 28(no. 1):54-59.
47. Calvanese D., Castano S., Guerra F., et al. Towards a Comprehensive Methodological Framework for Semantic Integration of Heterogeneous Data Sources. Eighth International Workshop on Knowledge Representation Meets Databases (KRDB) 2001.
48. Peim M., Franconi E., Paton N., et al. Query Processing with Description Logic Ontologies Over Object-Wrapped Databases. Proceedings of the International Conference on Scientific and Statistical Database Management (SSDBM) 2002.
49. Goble C., Stevens R., Ng G., et al. Transparent Access to Multiple Bioinformatics Information Sources. IBM Systems Journal 2001, 40(no. 2):534-551.
50. Gupta A., Ludäscher B., Martone M.E. Knowledge-Based Integration of Neuroscience Data Sources. Proceedings of the Twelfth International Conference on Scientific and Statistical Database Management (SSDBM) 2000, 39-52. IEEE Computer Society.
51. Horrocks I. DAML+OIL: A Reason-Able Web Ontology Language. Proceedings of the International Conference on Extending Database Technology (EDBT) 2002, 2-13.