Deciphering UV-B-induced variation in DNA methylation pattern and its influence on regulation of DBR2 expression in Artemisia annua L.

Planta

Volumn 242, Issue 4, 2015, Pages 869-879

  Pandey, Neha ^a   Pandey Rai, Shashi ^a  

^a BANARAS HINDU UNIVERSITY   (India)

Author keywords

Artemisia annua; Bisulfite sequencing PCR; DBR2 promoter; DNA methylation; WRKY

Indexed keywords

ARTEMISINIC ALDEHYDE DELTA11(13) REDUCTASE, ARTEMISIA ANNUA; OXIDOREDUCTASE; RNA 18S; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ARTEMISIA ANNUA; BINDING SITE; DNA METHYLATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT GENE; PROMOTER REGION; SEQUENCE HOMOLOGY; ULTRAVIOLET RADIATION;

ARTEMISIA ANNUA; BASE SEQUENCE; BINDING SITES; DNA METHYLATION; GENES, PLANT; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PLANT PROTEINS; PROMOTER REGIONS, GENETIC; RNA, RIBOSOMAL, 18S; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION FACTORS; ULTRAVIOLET RAYS;

EID: 84941174859     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-015-2323-3     Document Type: Article

References (40)

1. Ahlawat S, Saxena P, Alam P, Wajid S, Abdin MZ (2014) Modulation of artemisinin biosynthesis by elicitors, inhibitor, and precursor in hairy root cultures of Artemisia annua L. J Plant Interact 9(1):811–824. doi:10.1080/17429145.2014.949885
2. Aina R, Sgorbati S, Santagostino A, Labra M, Ghiani A, Citterio S (2004) Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp. Physiol Plant 121(3):472–480
3. Akimoto K, Katakami H, Kim HJ, Ogawa E, Sano CM, Wada Y, Sano H (2007) Epigenetic inheritance in rice plants. Ann Bot 100:205–217. doi:10.1093/aob/mcm110
4. Baker SS, Wilhelm KS, Thomashow MF (1994) The 5′-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold-, drought- and ABA-regulated gene expression. Plant Mol Biol 24(5):701–713
5. Barciszewska MZ, Barciszewska AM, Rattan SI (2007) TLC-based detection of methylated cytosine: application to aging epigenetics. Biogerontology 8:673–678
6. Chen H, Lai Z, Shi J, Xiao Y, Chen Z, Xu X (2010) Roles of Arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress. BMC Plant Biol 10:281. doi:10.1186/1471-2229-10-281
7. Deaton AM, Bird A (2011) CpG islands and the regulation of transcription. Genes Dev 25(10):1010–1022
8. Dhar MK, Vishal P, Sharma R, Kaul S (2014) Epigenetic dynamics: role of epimarks and underlying machinery in plants exposed to abiotic stress. Journal of Genomics, vol 2014, Hindawi Publishing Corporation International, Article ID 187146, p 10. doi:10.1155/2014/187146
9. Dyachenko O, Zakharchenko N, Shevchuk T, Bohnert HJ, Cushman JC, Buryanov YI (2006) Effect of hypermethylation of CCWGG sequences in DNA of Mesembryanthemum crystallinum plants on their adaptation to salt stress. Biochemistry (Moscow) 71(4):461–465
10. Fang H, Liu X, Thorn G, Duan J, Tian L (2014) Expression analysis of histone acetyltransferases in rice under drought stress. Biochem Biophys Res Commun 443:400–405. doi:10.1016/j.bbrc.2013.11.102
11. Galaud JP, Gaspar T, Boyer N (1993) Inhibition of internode growth due to mechanical stress in Bryonia dioica: relationship between changes in DNA methylation and ethylene metabolism. Physiol Plant 87:25–30
12. Hasbun R, Valledor L, Rodrıguez JL, Santamaria E, Rıos D, Sanchez M, Cañal MJ, Rodríguez R (2008) HPCE quantification of 5-methyl-20-deoxycytidine in genomic DNA: methodological optimization for chestnut and other woody species. Plant Physiol Biochem 46:815–822
13. Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27:297–300
14. Jin H, Cominelli E, Bailey P, Parr A, Mehrtens F, Jones J, Tonelli C, Weisshaar B, Martin C (2000) Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. EMBO J 19:6150–6161
15. Khanuja SPS, Shasany AK, Darokar MP, Kumar S (1999) Rapid isolation of DNA from dry and fresh samples of plants producing large amounts of secondary metabolites and essential oils. Plant Mol Bio Rep 17:1–7
16. Kumari R, Yadav G, Sharma V, Sharma V, Kumar S (2013) Cytosine hypomethylation at CHG and CHH sites in the pleiotropic mutants of Mendelian inheritance in Catharanthus roseus. J Genet 92(3):499–511
17. Labra M, Grassi F, Imazio S, Di Fabio T, Citterio S, Sgorbati S, Agradi E (2004) Genetic and DNA-methylation changes induced by potassium dichromate in Brassica napus L. Chemosphere 54(8):1049–1058
18. Lescot M, Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325–327
19. Li LC, Dahiya R (2002) MethPrimer: designing primers for methylation PCRs. Bioinformatics 18:1427e1431
20. Ma DD, Pu G, Lei C, Ma L, Wang H, Guo Y, Chen J, Du Z, Wang H, Li G, Ye H, Liu B (2009) Isolation and characterization of AaWRKY1, an Artemisia annua transcription factor that regulates the amorpha-4, 11-diene synthase gene, a key gene of artemisinin biosynthesis. Plant Cell Physiol 50:2146–2161
21. Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB, FANTOM consortium (2013) Effects of cytosine methylation on transcription factor binding sites. BMC Genomics 15:119. doi:10.1186/1471-2164-15-119
22. Michalak M, Barciszewska MZ, Barciszewski J, Plitta BP, Chmielarz P (2013) Global changes in DNA methylation in seeds and seedlings of Pyrus communis after seed desiccation and storage. PLoS One 8(8):e70693. doi:10.1371/journal.pone.0070693
23. Mirouze M, Paszkowski J (2011) Epigenetic contribution to stress adaptation in plants. Curr Opin Plant Biol 14:267–274
24. Ohlsson AB, Segerfeldt P, Lindstrom A, Borg-Karlson AK, Berglund T (2013) UV-B exposure of indoor-grown Picea abies seedlings causes an epigenetic effect and selective emission of terpenes. Z Naturforsch C 68:139–147. doi:10.5560/ZNC.2013.68c0139
25. Palacios D, Summerbell D, Rigby PWJ, Boyes J (2010) Interplay between DNA methylation and transcription factor availability: implications for developmental activation of the mouse Myogenin gene. Mol Cell Biol 30:3805–3815. doi:10.1128/MCB.00050-10
26. Pandey N, Pandey-Rai S (2014) Short-term UV-B radiation–mediated transcriptional responses and altered secondary metabolism of in vitro propagated plantlets of Artemisia annua L. Plant Cell Tiss Organ Cult 116:371–385. doi:10.1007/s11240-013-0413-0
27. Pandey SP, Somssich IE (2009) The role of WRKY transcription factors in plant immunity. Plant Physiol 150:1648–1655. doi:10.1104/pp.109.138990
28. Peng H, Zhang J (2009) Plant genomic DNA methylation in response to stresses: potential applications and challenges in plant breeding. Prog Nat Sci 19:1037–1045
29. Sarvestani R, Peyghambary SA, Abbasi A (2014) Isolation and characterization of DBR2 gene promoter from Iranian Artemisia annua. J Agr Sci Tech 16:191–202
30. Steward N, Kusano T, Sano H (2000) Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells. Nucleic Acids Res 28(17):3250–3259
31. Wada Y, Miyamoto K, Kusano T, Sano H (2004) Association between up-regulation of stress-responsive genes and hypomethylation of genomic DNA in tobacco plants. Mol Genet Genomics 271:658–666
32. Wang YY, Shu Y, Xiao YF, Wang Q, Kanekura T, Li YP, Wang JC, Zhao M, QianJin L, Xiao R (2014) Hypomethylation and overexpression of ITGAL (CD11a) in CD4+ T cells in systemic sclerosis. Clin Epigenetics 6(1):25. doi:10.1186/1868-7083-6-25
33. Yang JL, Liu LW, Gong YQ, Huang DQ, Wang F, He LL (2007) Analysis of genomic DNA methylation level in radish under cadmium stress by methylation sensitive amplified polymorphism technique. J Plant Physiol Mol Biol 33(3):219–226
34. Yang K, Monafared RS, Wang H, Lundgren A, Brodelius PE (2015) The activity of the artemisinic aldehyde Δ11(13) reductase promoter is important for artemisinin yield in different chemotypes of Artemisia annua L. Plant Mol Biol. doi:10.1007/s11103-015-0284-3
35. Yuan Y, Liu W, Zhang Q, Xiang L, Liu X, Chen M, Lin Z, Wang Q, Liao Z (2015) Overexpression of artemisinic aldehyde Δ11 (13) reductase gene-enhanced artemisinin and its relative metabolite biosynthesis in transgenic Artemisia annua L. Biotechnol Appl Biochem 62(1):17–23. doi:10.1002/bab.1234
36. Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328:916–919
37. Zhang YY, Teoh KH, Reed DW, Maes L, Goossens A, Olson DJH, Ross ARS, Covello PS (2008) The molecular cloning of artemisinic aldehyde 11(13) reductase and its role in glandular trichome-dependent biosynthesis of artemisinin in Artemisia annua. J Biol Chem 283:21501–21508
38. Zhao SS, Zeng MY (1985) Spektrometrische Hochdruck-Flu¨ ssigkeits Chromatographische (HPLC) Untersuchungen zur Analytik von Qinghaosu. Planta Med 51:217–233
39. Zhao J, Dahle D, Zhou Y, Zhang X, Klibanski A (2005) Hypermethylation of the promoter region is associated with the loss of MEG3 gene expression in human pituitary tumors. J Clin Endocrinol Metab 90(4):2179–2186
40. Zhu X, Li F, Yang B, Liang J, Qin H, Xu J (2013) Effects of ultraviolet B exposure on DNA methylation in patients with systemic lupus erythematosus. Exp Ther Med 5(4):1219–1225. doi:10.3892/etm.2013.960