Complex wireframe DNA origami nanostructures with multi-arm junction vertices

Nature Nanotechnology

Volumn 10, Issue 9, 2015, Pages 779-784

  Zhang, Fei ^a   Jiang, Shuoxing ^a   Wu, Siyu ^b   Li, Yulin ^b   Mao, Chengde ^b   Liu, Yan ^a   Yan, Hao ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

^b PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NANOSTRUCTURES; SCAFFOLDS;

ASSEMBLED STRUCTURES; CRYSTALLINE PATTERNS; DNA NANOSTRUCTURES; DNA NANOTECHNOLOGY; THREE DIMENSIONAL SPACE; THREE-DIMENSIONAL DESIGNS; THREE-DIMENSIONAL NANOSTRUCTURES; VARIABLE CURVATURE;

DNA;

NANOMATERIAL; DNA;

ARCHITECTURE; ARTICLE; ATOMIC FORCE MICROSCOPY; DNA STRUCTURE; ENERGY COST; GEL ELECTROPHORESIS; GENETIC ENGINEERING; INDEL MUTATION; NANOTECHNOLOGY; PRIORITY JOURNAL; CHEMISTRY; CONFORMATION; PARTICLE SIZE; PROCEDURES; ULTRASTRUCTURE;

DNA; NANOSTRUCTURES; NANOTECHNOLOGY; NUCLEIC ACID CONFORMATION; PARTICLE SIZE;

EID: 84941079426     PISSN: 17483387     EISSN: 17483395     Source Type: Journal    
DOI: 10.1038/nnano.2015.162     Document Type: Article

References (28)

1. Aldaye, F. A.; Palmer, A. L. and Sleiman, H. F. Assembling materials with DNA as the guide. Science 321, 1795-1799 (2008)
2. Seeman, N. C. Nanomaterials based on DNA. Annu. Rev. Biochem. 79, 65-87 (2010)
3. Pinheiro, A. V.; Han, D. R.; Shih,W. M. and Yan, H. Challenges and opportunities for structural DNA nanotechnology. Nature Nanotech. 6, 763-772 (2011)
4. Zhang, F.; Nangreave, J.; Liu, Y. and Yan, H. Structural DNA nanotechnology: state of the art and future perspective. J. Am. Chem. Soc. 136, 11198-11211 (2014)
5. Rothemund, P. W. K. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302 (2006)
6. Douglas, S. M. et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418 (2009)
7. Andersen, E. S. et al. Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-75 (2009)
8. Dietz, H.; Douglas, S. M. and Shih, W. M. Folding DNA into twisted and curved nanoscale shapes. Science 325, 725-730 (2009)
9. Han, D. R. et al. DNA origami with complex curvatures in three-dimensional space. Science 332, 342-346 (2011)
10. Han, D. R. et al. DNA gridiron nanostructures based on four-arm junctions. Science 339, 1412-1415 (2013)
11. He, Y. et al. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra. Nature 452, 198-201 (2008)
12. Winfree, E.; Liu, F. R.; Wenzler, L. A. and Seeman, N. C. Design and self-assembly of two-dimensional DNA crystals. Nature 394, 539-544 (1998)
13. West, D. B. Introduction to Graph Theory (Prentice Hall, 1996)
14. Gibbons, A. Algorithmic Graph Theory (Cambridge Univ. Press, 1985)
15. He, Y.; Chen, Y.; Liu, H.; Ribbe, A. E. and Mao, C. Self-assembly of hexagonal DNA two-dimensional (2D) arrays. J. Am. Chem. Soc. 127, 12202-12203 (2005)
16. Yan, H.; Park, S. H.; Finkelstein, G.; Reif, J. H. and LaBean, T. H. DNA templated self-assembly of protein arrays and highly conductive nanowires. Science 301, 1882-1884 (2003)
17. He, Y.; Tian, Y.; Ribbe, A. E. and Mao, C. D. Highly connected two-dimensional crystals of DNA six-point-stars. J. Am. Chem. Soc. 128, 15978-15979 (2006)
18. Liu, Y.; Ke, Y. G. and Yan, H. Self-assembly of symmetric finite size DNA nanoarrays. J. Am. Chem. Soc. 127, 17140-17141 (2005)
19. Sommerville, D. M. Y. Introduction to the Geometry of N Dimensions (E. P. Dutton, 1929)
20. Wells, A. F. Three-Dimensional Nets and Polyhedra (Wiley, 1977)
21. Chen, J. and Seeman, N. C. Synthesis from DNA of a molecule with the connectivity of a cube. Nature 350, 631-633 (1991)
22. Zhang, Y. and Seeman, N. C. Consruction of a DNA-truncated octahedron. J. Am. Chem. Soc. 116, 1661-1669 (1994)
23. Yan, H.; Zhang, X.; Shen, Z. and Seeman, N. C. A robust DNA mechanical device controlled by hybridization topology. Nature 415, 62-65 (2002)
24. Kato, T.; Goodman, R. P.; Erben, C. M.; Turberfield, A. J. and Namba, K. Highresolution structural analysis of a DNA nanostructure by cryoEM. Nano Lett. 9, 2747-2750 (2009)
25. Shen, Z.; Yan, H.; Wang, T. and Seeman, N. C. Paranemic crossover DNA: a generalized Holliday structure with applications in nanotechnology. J. Am. Chem. Soc. 126, 1666-1674 (2004)
26. Geary, C.; Rothemund, P.W. K. and Andersen, E. S. A single-stranded architecture for cotranscriptional folding of RNA nanostructures. Science 345, 799-804 (2014)
27. Ludtke, S. J.; Baldwin, P. R. and Chiu, W. EMAN: semiautomated software for high resolution single-particle reconstructions. J. Struct. Biol. 128, 82-97 (1999)
28. Goddard, T. D.; Huang, C. C. and Ferrin, T. E. Visualizing density maps with UCSF Chimera. J. Struct. Biol. 157, 281-287 (2007)