-
1
-
-
84902183146
-
An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription
-
Saayman, S., Ackley, A., Turner, A. M., Famiglietti, M., Bosque, A., Clemson, M., Planelles, V. and Morris, K. V. (2014) An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription. Mol. Ther., 22, 1164-1175.
-
(2014)
Mol. Ther.
, vol.22
, pp. 1164-1175
-
-
Saayman, S.1
Ackley, A.2
Turner, A.M.3
Famiglietti, M.4
Bosque, A.5
Clemson, M.6
Planelles, V.7
Morris, K.V.8
-
2
-
-
77957938117
-
Viruses, microRNAs, and host interactions
-
Skalsky, R. L. and Cullen, B. R. (2010) Viruses, microRNAs, and host interactions. Annu. Rev. Microbiol., 64, 123-141.
-
(2010)
Annu. Rev. Microbiol.
, vol.64
, pp. 123-141
-
-
Skalsky, R.L.1
Cullen, B.R.2
-
3
-
-
44649110160
-
Viral and cellular microRNAs as determinants of viral pathogenesis and immunity
-
Gottwein, E. and Cullen, B. R. (2008) Viral and cellular microRNAs as determinants of viral pathogenesis and immunity. Cell Host Microbe, 3, 375-387.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 375-387
-
-
Gottwein, E.1
Cullen, B.R.2
-
4
-
-
84856231635
-
Viral infection and the evolution of caspase 8-regulated apoptotic and necrotic death pathways
-
Mocarski, E. S., Upton, J. W. and Kaiser, W. J. (2012) Viral infection and the evolution of caspase 8-regulated apoptotic and necrotic death pathways. Nat. Rev. Immunol., 12, 79-88.
-
(2012)
Nat. Rev. Immunol.
, vol.12
, pp. 79-88
-
-
Mocarski, E.S.1
Upton, J.W.2
Kaiser, W.J.3
-
5
-
-
63649146590
-
Cellular versus viral microRNAs in host-virus interaction
-
Ghosh, Z., Mallick, B. and Chakrabarti, J. (2009) Cellular versus viral microRNAs in host-virus interaction. Nucleic Acids Res., 37, 1035-1048.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1035-1048
-
-
Ghosh, Z.1
Mallick, B.2
Chakrabarti, J.3
-
6
-
-
84870378445
-
MicroRNAs and HIV-1: Complex interactions
-
Klase, Z., Houzet, L. and Jeang, K. T. (2012) MicroRNAs and HIV-1: complex interactions. J. Biol. Chem., 287, 40884-40890.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 40884-40890
-
-
Klase, Z.1
Houzet, L.2
Jeang, K.T.3
-
7
-
-
77649119525
-
MicroRNA expression and virulence in pandemic influenza virus-infected mice
-
Li, Y., Chan, E. Y., Li, J., Ni, C., Peng, X., Rosenzweig, E., Tumpey, T. M. and Katze, M. G. (2010) MicroRNA expression and virulence in pandemic influenza virus-infected mice. J. Virol., 84, 3023-3032.
-
(2010)
J. Virol.
, vol.84
, pp. 3023-3032
-
-
Li, Y.1
Chan, E.Y.2
Li, J.3
Ni, C.4
Peng, X.5
Rosenzweig, E.6
Tumpey, T.M.7
Katze, M.G.8
-
8
-
-
79952137666
-
Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling
-
Peng, X., Gralinski, L., Armour, C. D., Ferris, M. T., Thomas, M. J., Proll, S., Bradel-Tretheway, B. G., Korth, M. J., Castle, J. C., Biery, M. C. et al. (2010) Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling. mBio, 1. e00206-e00210.
-
(2010)
MBio
, vol.1
, pp. e00206-e00210
-
-
Peng, X.1
Gralinski, L.2
Armour, C.D.3
Ferris, M.T.4
Thomas, M.J.5
Proll, S.6
Bradel-Tretheway, B.G.7
Korth, M.J.8
Castle, J.C.9
Biery, M.C.10
-
9
-
-
78651325932
-
Lncrnadb: A reference database for long noncoding RNAs
-
Amaral, P. P., Clark, M. B., Gascoigne, D. K., Dinger, M. E. and Mattick, J. S. (2011) lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Res., 39, D146-D151.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D146-D151
-
-
Amaral, P.P.1
Clark, M.B.2
Gascoigne, D.K.3
Dinger, M.E.4
Mattick, J.S.5
-
10
-
-
78651293534
-
Mirbase: Integrating microRNA annotation and deep-sequencing data
-
Kozomara, A. and Griffiths-Jones, S. (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res., 39, D152-D157.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
11
-
-
33846056836
-
Sno/scaRNAbase: A curated database for small nucleolar RNAs and cajal body-specific RNAs
-
Xie, J., Zhang, M., Zhou, T., Hua, X., Tang, L. and Wu, W. (2007) Sno/scaRNAbase: a curated database for small nucleolar RNAs and cajal body-specific RNAs. Nucleic Acids Res., 35, D183-D187.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D183-D187
-
-
Xie, J.1
Zhang, M.2
Zhou, T.3
Hua, X.4
Tang, L.5
Wu, W.6
-
12
-
-
33644875300
-
Snorna-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
Lestrade, L. and Weber, M. J. (2006) snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res., 34, D158-D162.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D158-D162
-
-
Lestrade, L.1
Weber, M.J.2
-
13
-
-
84859101602
-
-
Elsevier Academic Press
-
King, A. M. Q., Adams, M. J., Carstens, E. B. and Lefkowitz, E. J. (2012) Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press.
-
(2012)
Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses
-
-
King, A.M.Q.1
Adams, M.J.2
Carstens, E.B.3
Lefkowitz, E.J.4
-
14
-
-
24944524898
-
International committee on taxonomy of viruses and the 3, 142 unassigned species
-
Fauquet, C. M. and Fargette, D. (2005) International committee on taxonomy of viruses and the 3, 142 unassigned species. Virol. J., 2, 64.
-
(2005)
Virol. J.
, vol.2
, pp. 64
-
-
Fauquet, C.M.1
Fargette, D.2
-
15
-
-
77956548953
-
Cytoscape web: An interactive web-based network browser
-
Lopes, C. T., Franz, M., Kazi, F., Donaldson, S. L., Morris, Q. and Bader, G. D. (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics, 26, 2347-2348.
-
(2010)
Bioinformatics
, vol.26
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
Bader, G.D.6
-
16
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright, A. J., John, B., Gaul, U., Tuschl, T., Sander, C. and Marks, D. S. (2003) MicroRNA targets in Drosophila. Genome Biol., 5, R1.
-
(2003)
Genome Biol.
, vol.5
, pp. R1
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
17
-
-
84867300120
-
RIsearch: Fast RNA-RNA interaction search using a simplified nearest-neighbor energy model
-
Wenzel, A., Akbasli, E. and Gorodkin, J. (2012) RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model. Bioinformatics, 28, 2738-2746.
-
(2012)
Bioinformatics
, vol.28
, pp. 2738-2746
-
-
Wenzel, A.1
Akbasli, E.2
Gorodkin, J.3
-
18
-
-
77953886400
-
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features
-
Wang, L., Huang, C., Yang, M. Q. and Yang, J. Y. (2010) BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Syst. Biol., 4(Suppl. 1), S3.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. S3
-
-
Wang, L.1
Huang, C.2
Yang, M.Q.3
Yang, J.Y.4
-
19
-
-
34547560560
-
RNABindR: A server for analyzing and predicting RNA-binding sites in proteins
-
Terribilini, M., Sander, J. D., Lee, J. H., Zaback, P., Jernigan, R. L., Honavar, V. and Dobbs, D. (2007) RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Nucleic Acids Res., 35, W578-W584.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W578-W584
-
-
Terribilini, M.1
Sander, J.D.2
Lee, J.H.3
Zaback, P.4
Jernigan, R.L.5
Honavar, V.6
Dobbs, D.7
-
20
-
-
78651308986
-
RBPDB: A database of RNA-binding specificities
-
Cook, K. B., Kazan, H., Zuberi, K., Morris, Q. and Hughes, T. R. (2011) RBPDB: a database of RNA-binding specificities. Nucleic Acids Res., 39, D301-D308.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D301-D308
-
-
Cook, K.B.1
Kazan, H.2
Zuberi, K.3
Morris, Q.4
Hughes, T.R.5
-
21
-
-
58149199573
-
VirusMINT: A viral protein interaction database
-
Chatraryamontri, A., Ceol, A., Peluso, D., Nardozza, A., Panni, S., Sacco, F., Tinti, M., Smolyar, A., Castagnoli, L., Vidal, M. et al. (2009) VirusMINT: a viral protein interaction database. Nucleic Acids Res., 37, D669-D673.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D669-D673
-
-
Chatraryamontri, A.1
Ceol, A.2
Peluso, D.3
Nardozza, A.4
Panni, S.5
Sacco, F.6
Tinti, M.7
Smolyar, A.8
Castagnoli, L.9
Vidal, M.10
-
22
-
-
58149178566
-
VirHostNet: A knowledge base for the management and the analysis of proteome-wide virus-host interaction networks
-
Navratil, V., De Chassey, B., Meyniel, L., Delmotte, S., Gautier, C., Andre, P., Lotteau, V. and Rabourdin-Combe, C. (2009) VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks. Nucleic Acids Res., 37, D661-D668.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D661-D668
-
-
Navratil, V.1
De Chassey, B.2
Meyniel, L.3
Delmotte, S.4
Gautier, C.5
Andre, P.6
Lotteau, V.7
Rabourdin-Combe, C.8
-
23
-
-
58149200940
-
Human immunodeficiency virus type 1, human protein interaction database at NCBI
-
Fu, W., Sanders-Beer, B. E., Katz, K. S., Maglott, D. R., Pruitt, K. D. and Ptak, R. G. (2009) Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res., 37, D417-D422.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D417-D422
-
-
Fu, W.1
Sanders-Beer, B.E.2
Katz, K.S.3
Maglott, D.R.4
Pruitt, K.D.5
Ptak, R.G.6
-
24
-
-
84877953144
-
PHISTO: Pathogen-host interaction search tool
-
Durmus Tekir, S., Cakir, T., Ardic, E., Sayilirbas, A. S., Konuk, G., Konuk, M., Sariyer, H., Ugurlu, A., Karadeniz, I., Ozgur, A. et al. (2013) PHISTO: pathogen-host interaction search tool. Bioinformatics, 29, 1357-1358.
-
(2013)
Bioinformatics
, vol.29
, pp. 1357-1358
-
-
Durmus Tekir, S.1
Cakir, T.2
Ardic, E.3
Sayilirbas, A.S.4
Konuk, G.5
Konuk, M.6
Sariyer, H.7
Ugurlu, A.8
Karadeniz, I.9
Ozgur, A.10
|