-
1
-
-
65249170959
-
A comprehensive analysis of the La-motif protein superfamily
-
Bousquet-Antonelli, C., Deragon, J.M. (2009) A comprehensive analysis of the La-motif protein superfamily. RNA, 15, 750-764.
-
(2009)
RNA
, vol.15
, pp. 750-764
-
-
Bousquet-Antonelli, C.1
Deragon, J.M.2
-
2
-
-
77953694873
-
Conserved and divergent features of the structure and function of la and La-related proteins (LARPs)
-
Bayfield, M.A., Yang, R., Maraia, R.J. (2010) Conserved and divergent features of the structure and function of La and La-related proteins (LARPs). Biochim. Biophys. Acta, 1799, 365-378.
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 365-378
-
-
Bayfield, M.A.1
Yang, R.2
Maraia, R.J.3
-
3
-
-
1842577742
-
Structural analysis of cooperative RNA binding by the la motif and central RRM domain of human la protein
-
Alfano, C., Sanfelice, D., Babon, J., Kelly, G., Jacks, A., Curry, S., Conte, M.R. (2004) Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein. Nat. Struct. Mol. Biol., 11, 323-329.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 323-329
-
-
Alfano, C.1
Sanfelice, D.2
Babon, J.3
Kelly, G.4
Jacks, A.5
Curry, S.6
Conte, M.R.7
-
4
-
-
44649173098
-
Structural analysis reveals conformational plasticity in the recognition of RNA 3-ends by the human la protein
-
Kotik-Kogan, O., Valentine, E.R., Sanfelice, D., Conte, M.R., Curry, S. (2008) Structural analysis reveals conformational plasticity in the recognition of RNA 3-ends by the human La protein. Structure, 16, 852-862.
-
(2008)
Structure
, vol.16
, pp. 852-862
-
-
Kotik-Kogan, O.1
Valentine, E.R.2
Sanfelice, D.3
Conte, M.R.4
Curry, S.5
-
6
-
-
29544449398
-
Structural basis for recognition and sequestration of UUU(OH) 3temini of nascent RNA polymerase III transcripts by la a rheumatic disease autoantigen
-
Teplova, M., Yuan, Y.R., Phan, A.T., Malinina, L., Ilin, S., Teplov, A., Patel, D.J. (2006) Structural basis for recognition and sequestration of UUU(OH) 3-temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen. Mol. Cell, 21, 75-85.
-
(2006)
Mol. Cell
, vol.21
, pp. 75-85
-
-
Teplova, M.1
Yuan, Y.R.2
Phan, A.T.3
Malinina, L.4
Ilin, S.5
Teplov, A.6
Patel, D.J.7
-
7
-
-
64049093886
-
Precursor-product discrimination by la protein during tRNA metabolism
-
Bayfield, M.A., Maraia, R.J. (2009) Precursor-product discrimination by La protein during tRNA metabolism. Nat. Struct. Mol. Biol., 16, 430-437.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 430-437
-
-
Bayfield, M.A.1
Maraia, R.J.2
-
8
-
-
84856860538
-
Analysis of the interaction with the hepatitis C virus mRNA reveals an alternative mode of RNA recognition by the human la protein
-
Martino, L., Pennell, S., Kelly, G., Bui, T.T., Kotik-Kogan, O., Smerdon, S.J., Drake, A.F., Curry, S., Conte, M.R. (2012) Analysis of the interaction with the hepatitis C virus mRNA reveals an alternative mode of RNA recognition by the human La protein. Nucleic Acids Res., 40, 1381-1394.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1381-1394
-
-
Martino, L.1
Pennell, S.2
Kelly, G.3
Bui, T.T.4
Kotik-Kogan, O.5
Smerdon, S.J.6
Drake, A.F.7
Curry, S.8
Conte, M.R.9
-
9
-
-
84871437260
-
The association of a la module with the PABP-interacting motif PAM2 is a recurrent evolutionary process that led to the neofunctionalization of La-related proteins
-
Merret, R., Martino, L., Bousquet-Antonelli, C., Fneich, S., Descombin, J., Billey, E., Conte, M.R., Deragon, J.M. (2013) The association of a La module with the PABP-interacting motif PAM2 is a recurrent evolutionary process that led to the neofunctionalization of La-related proteins. RNA, 19, 36-50.
-
(2013)
RNA
, vol.19
, pp. 36-50
-
-
Merret, R.1
Martino, L.2
Bousquet-Antonelli, C.3
Fneich, S.4
Descombin, J.5
Billey, E.6
Conte, M.R.7
Deragon, J.M.8
-
10
-
-
73149093404
-
Binding of LARP6 to the conserved 5-stem-loop regulates translation of mRNAs encoding type i collagen
-
Cai, L., Fritz, D., Stefanovic, L., Stefanovic, B. (2010) Binding of LARP6 to the conserved 5-stem-loop regulates translation of mRNAs encoding type I collagen. J. Mol. Biol., 395, 309-326.
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 309-326
-
-
Cai, L.1
Fritz, D.2
Stefanovic, L.3
Stefanovic, B.4
-
11
-
-
78751506420
-
La-related protein 4 binds poly(A), interacts with the poly(A)-binding protein MLLE domain via a variant PAM2w motif, and can promote mRNA stability
-
Yang, R., Gaidamakov, S.A., Xie, J., Lee, J., Martino, L., Kozlov, G., Crawford, A.K., Russo, A.N., Conte, M.R., Gehring, K. et al. (2011) La-related protein 4 binds poly(A), interacts with the poly(A)-binding protein MLLE domain via a variant PAM2w motif, and can promote mRNA stability. Mol. Cell. Biol., 31, 542-556.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 542-556
-
-
Yang, R.1
Gaidamakov, S.A.2
Xie, J.3
Lee, J.4
Martino, L.5
Kozlov, G.6
Crawford, A.K.7
Russo, A.N.8
Conte, M.R.9
Gehring, K.10
-
12
-
-
73549114412
-
Acheron, a Lupus antigen family member, regulates integrin expression, adhesion, and motility in differentiating myoblasts
-
Glenn, H.L., Wang, Z., Schwartz, L.M. (2010) Acheron, a Lupus antigen family member, regulates integrin expression, adhesion, and motility in differentiating myoblasts. Am. J. Physiol. Cell. Physiol., 298, C46-C55.
-
(2010)
Am. J. Physiol. Cell. Physiol.
, vol.298
, pp. C46-C55
-
-
Glenn, H.L.1
Wang, Z.2
Schwartz, L.M.3
-
13
-
-
34047252849
-
Acheron, a novel member of the Lupus Antigen family, is induced during the programmed cell death of skeletal muscles in the moth Manduca sexta
-
Valavanis, C., Wang, Z., Sun, D., Vaine, M., Schwartz, L.M. (2007) Acheron, a novel member of the Lupus Antigen family, is induced during the programmed cell death of skeletal muscles in the moth Manduca sexta. Gene, 393, 101-109.
-
(2007)
Gene
, vol.393
, pp. 101-109
-
-
Valavanis, C.1
Wang, Z.2
Sun, D.3
Vaine, M.4
Schwartz, L.M.5
-
14
-
-
68349114928
-
Regulation of muscle differentiation and survival by Acheron
-
Wang, Z., Glenn, H., Brown, C., Valavanis, C., Liu, J.X., Seth, A., Thomas, J.E., Karlstrom, R.O., Schwartz, L.M. (2009) Regulation of muscle differentiation and survival by Acheron. Mech. Dev., 126, 700-709.
-
(2009)
Mech. Dev.
, vol.126
, pp. 700-709
-
-
Wang, Z.1
Glenn, H.2
Brown, C.3
Valavanis, C.4
Liu, J.X.5
Seth, A.6
Thomas, J.E.7
Karlstrom, R.O.8
Schwartz, L.M.9
-
15
-
-
63449096618
-
Acheron, an novel la antigen family member, binds to CASK and forms a complex with Id transcription factors
-
Weng, H., Kim, C., Valavanis, C., Wang, Z., Schwartz, L.M. (2009) Acheron, an novel LA antigen family member, binds to CASK and forms a complex with Id transcription factors. Cell. Mol. Biol. Lett., 14, 273-287.
-
(2009)
Cell. Mol. Biol. Lett.
, vol.14
, pp. 273-287
-
-
Weng, H.1
Kim, C.2
Valavanis, C.3
Wang, Z.4
Schwartz, L.M.5
-
16
-
-
79953154960
-
Mutation of the 5-untranslated region stem-loop structure inhibits alpha1(I) collagen expression in vivo
-
Parsons, C.J., Stefanovic, B., Seki, E., Aoyama, T., Latour, A.M., Marzluff, W.F., Rippe, R.A., Brenner, D.A. (2011) Mutation of the 5-untranslated region stem-loop structure inhibits alpha1(I) collagen expression in vivo. J. Biol. Chem., 286, 8609-8619.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 8609-8619
-
-
Parsons, C.J.1
Stefanovic, B.2
Seki, E.3
Aoyama, T.4
Latour, A.M.5
Marzluff, W.F.6
Rippe, R.A.7
Brenner, D.A.8
-
17
-
-
79961097552
-
Progress towards discovery of antifibrotic drugs targeting synthesis of type i collagen
-
Fritz, D., Cai, L., Stefanovic, L., Stefanovic, B. (2011) Progress towards discovery of antifibrotic drugs targeting synthesis of type I collagen. Curr. Med. Chem., 18, 3410-3416.
-
(2011)
Curr. Med. Chem.
, vol.18
, pp. 3410-3416
-
-
Fritz, D.1
Cai, L.2
Stefanovic, L.3
Stefanovic, B.4
-
18
-
-
77955059323
-
Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA
-
Hands-Taylor, K.L., Martino, L., Tata, R., Babon, J.J., Bui, T.T., Drake, A.F., Beavil, R.L., Pruijn, G.J., Brown, P.R., Conte, M.R. (2010) Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA. Nucleic Acids Res., 38, 4052-4066.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4052-4066
-
-
Hands-Taylor, K.L.1
Martino, L.2
Tata, R.3
Babon, J.J.4
Bui, T.T.5
Drake, A.F.6
Beavil, R.L.7
Pruijn, G.J.8
Brown, P.R.9
Conte, M.R.10
-
19
-
-
84857206161
-
Overlap extension PCR: An efficient method for transgene construction
-
Nelson, M.D., Fitch, D.H. (2011) Overlap extension PCR: an efficient method for transgene construction. Methods Mol. Biol., 772, 459-470.
-
(2011)
Methods Mol. Biol.
, vol.772
, pp. 459-470
-
-
Nelson, M.D.1
Fitch, D.H.2
-
20
-
-
0029968822
-
Improved nearest-neighbor parameters for predicting DNA duplex stability
-
SantaLucia, J. Jr., Allawi, H.T., Seneviratne, P.A. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry, 35, 3555-3562.
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
SantaLucia, J.1
Allawi, H.T.2
Seneviratne, P.A.3
-
21
-
-
3242798849
-
A simple method for improving protein solubility and long-term stability
-
Golovanov, A.P., Hautbergue, G.M., Wilson, S.A., Lian, L.Y. (2004) A simple method for improving protein solubility and long-term stability. J. Am. Chem. Soc., 126, 8933-8939.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8933-8939
-
-
Golovanov, A.P.1
Hautbergue, G.M.2
Wilson, S.A.3
Lian, L.Y.4
-
22
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR, 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
23
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
Vranken, W.F., Boucher, W., Stevens, T.J., Fogh, R.H., Pajon, A., Llinas, M., Ulrich, E.L., Markley, J.L., Ionides, J., Laue, E.D. (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins, 59, 687-696.
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinas, M.6
Ulrich, E.L.7
Markley, J.L.8
Ionides, J.9
Laue, E.D.10
-
24
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels, C., Xia, T.H., Billeter, M., Guntert, P., Wuthrich, K. (1995) The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR, 6, 1-10.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.1
Xia, T.H.2
Billeter, M.3
Guntert, P.4
Wuthrich, K.5
-
25
-
-
0032042263
-
Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra
-
Ottiger, M., Delaglio, F., Bax, A. (1998) Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra. J. Magn. Reson., 131, 373-378.
-
(1998)
J. Magn. Reson.
, vol.131
, pp. 373-378
-
-
Ottiger, M.1
Delaglio, F.2
Bax, A.3
-
26
-
-
0034919240
-
Automated assignment of ambiguous nuclear overhauser effects with ARIA
-
Linge, J.P., O'Donoghue, S.I., Nilges, M. (2001) Automated assignment of ambiguous nuclear overhauser effects with ARIA. Methods Enzymol., 339, 71-90.
-
(2001)
Methods Enzymol
, vol.339
, pp. 71-90
-
-
Linge, J.P.1
O'Donoghue, S.I.2
Nilges, M.3
-
27
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
Shen, Y., Delaglio, F., Cornilescu, G., Bax, A. (2009) TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J. Biomol. NMR, 44, 213-223.
-
(2009)
J. Biomol. NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
28
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., Wuthrich, K. (1996) MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph, 14, 51-55, 29-32.
-
(1996)
J. Mol. Graph
, vol.14
, Issue.51-55
, pp. 29-32
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
29
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse, A.M., Procter, J.B., Martin, D.M., Clamp, M., Barton, G.J. (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
30
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L., Rosenstrom, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res., 38, W545-W549.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenstrom, P.2
-
31
-
-
1842419667
-
Structure of the la motif: A winged helix domain mediates RNA binding via a conserved aromatic patch
-
Dong, G., Chakshusmathi, G., Wolin, S.L., Reinisch, K.M. (2004) Structure of the La motif: a winged helix domain mediates RNA binding via a conserved aromatic patch. EMBO J., 23, 1000-1007.
-
(2004)
EMBO J.
, vol.23
, pp. 1000-1007
-
-
Dong, G.1
Chakshusmathi, G.2
Wolin, S.L.3
Reinisch, K.M.4
-
33
-
-
0038646814
-
Structure of the C-terminal domain of human la protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element
-
Jacks, A., Babon, J., Kelly, G., Manolaridis, I., Cary, P.D., Curry, S., Conte, M.R. (2003) Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure, 11, 833-843.
-
(2003)
Structure
, vol.11
, pp. 833-843
-
-
Jacks, A.1
Babon, J.2
Kelly, G.3
Manolaridis, I.4
Cary, P.D.5
Curry, S.6
Conte, M.R.7
-
34
-
-
80053183973
-
A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop
-
Martin-Tumasz, S., Richie, A.C., Clos, L.J., Brow, D.A., Butcher, S.E. (2011) A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop. Nucleic Acids Res., 39, 7837-7847.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 7837-7847
-
-
Martin-Tumasz, S.1
Richie, A.C.2
Clos, L.J.3
Brow, D.A.4
Butcher, S.E.5
-
35
-
-
84885896091
-
Conservation of RNA chaperone activity of the human La-related proteins 4, 6 and 7
-
Hussain, R.H., Zawawi, M., Bayfield, M.A. (2013) Conservation of RNA chaperone activity of the human La-related proteins 4, 6 and 7. Nucleic Acids Res., 41, 8715-8725.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 8715-8725
-
-
Hussain, R.H.1
Zawawi, M.2
Bayfield, M.A.3
-
36
-
-
44949179228
-
RNA recognition motifs: Boring
-
Clery, A., Blatter, M., Allain, F.H. (2008) RNA recognition motifs: boring? Not quite. Curr. Opin. Struct. Biol., 18, 290-298.
-
(2008)
Not Quite. Curr. Opin. Struct. Biol.
, vol.18
, pp. 290-298
-
-
Clery, A.1
Blatter, M.2
Allain, F.H.3
-
37
-
-
0027753933
-
Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors
-
Birney, E., Kumar, S., Krainer, A.R. (1993) Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res., 21, 5803-5816.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5803-5816
-
-
Birney, E.1
Kumar, S.2
Krainer, A.R.3
-
38
-
-
84862633452
-
Dynamics in multi-domain protein recognition of RNA
-
Mackereth, C.D., Sattler, M. (2012) Dynamics in multi-domain protein recognition of RNA. Curr. Opin. Struct. Biol., 22, 287-296.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 287-296
-
-
Mackereth, C.D.1
Sattler, M.2
-
39
-
-
84863823490
-
Structural basis for telomerase RNA recognition and RNP assembly by the holoenzyme la family protein p65
-
Singh, M., Wang, Z., Koo, B.K., Patel, A., Cascio, D., Collins, K., Feigon, J. (2012) Structural basis for telomerase RNA recognition and RNP assembly by the holoenzyme La family protein p65. Mol. Cell, 47, 16-26.
-
(2012)
Mol. Cell
, vol.47
, pp. 16-26
-
-
Singh, M.1
Wang, Z.2
Koo, B.K.3
Patel, A.4
Cascio, D.5
Collins, K.6
Feigon, J.7
|