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Volumn 6, Issue Aug, 2015, Pages

Characterization of circulating transfer RNA-derived RNA fragments in cattle

Author keywords

Cattle; RNA seq; Small non coding RNA; Transfer RNA fragments; TRF

Indexed keywords

GLUTAMIC ACID; GLYCINE; HISTIDINE; LYSINE; NUCLEIC ACIDS, NUCLEIC ACID COMPONENTS AND THEIR DERIVATIVES; RNA DERIVED RNA FRAGMENT; UNCLASSIFIED DRUG; VALINE;

EID: 84941007382     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2015.00271     Document Type: Article
Times cited : (21)

References (18)
  • 1
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel, D. P. (2009). MicroRNAs: target recognition and regulatory functions. Cell 136, 215-233. doi: 10.1016/j.cell.2009.01.002.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 2
    • 71549169628 scopus 로고    scopus 로고
    • Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
    • Cole, C., Sobala, A., Lu, C., Thatcher, S. R., Bowman, A., Brown, J. W., et al. (2009). Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 15, 2147-2160. doi: 10.1261/rna.1738409.
    • (2009) RNA , vol.15 , pp. 2147-2160
    • Cole, C.1    Sobala, A.2    Lu, C.3    Thatcher, S.R.4    Bowman, A.5    Brown, J.W.6
  • 4
    • 84871586107 scopus 로고    scopus 로고
    • Hints of tRNA-derived small RNAs role in RNA silencing mechanisms
    • Garcia-Silva, M. R., Cabrera-Cabrera, F., Guida, M. C., and Cayota, A. (2012). Hints of tRNA-derived small RNAs role in RNA silencing mechanisms. Genes (Basel) 3, 603-614. doi: 10.3390/genes3040603.
    • (2012) Genes (Basel) , vol.3 , pp. 603-614
    • Garcia-Silva, M.R.1    Cabrera-Cabrera, F.2    Guida, M.C.3    Cayota, A.4
  • 5
    • 84871599142 scopus 로고    scopus 로고
    • How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
    • Haas, B. J., Chin, M., Nusbaum, C., Birren, B. W., and Livny, J. (2012). How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes? BMC Genomics 13:734. doi: 10.1186/1471-2164-13-734.
    • (2012) BMC Genomics , vol.13 , pp. 734
    • Haas, B.J.1    Chin, M.2    Nusbaum, C.3    Birren, B.W.4    Livny, J.5
  • 6
    • 77950202393 scopus 로고    scopus 로고
    • Human trna-derived small RNAs in the global regulation of RNA silencing
    • Haussecker, D., Huang, Y., Lau, A., Parameswaran, P., Fire, A. Z., and Kay, M. A. (2010). Human trna-derived small RNAs in the global regulation of RNA silencing. RNA 16, 673-695. doi: 10.1261/rna.2000810.
    • (2010) RNA , vol.16 , pp. 673-695
    • Haussecker, D.1    Huang, Y.2    Lau, A.3    Parameswaran, P.4    Fire, A.Z.5    Kay, M.A.6
  • 7
    • 80051713296 scopus 로고    scopus 로고
    • Angiogenin-induced tRNA fragments inhibit translation initiation
    • Ivanov, P., Emara, M. M., Villen, J., Gygi, S. P., and Anderson, P. (2011). Angiogenin-induced tRNA fragments inhibit translation initiation. Mol. Cell 43, 613-623. doi: 10.1016/j.molcel.2011.06.022.
    • (2011) Mol. Cell , vol.43 , pp. 613-623
    • Ivanov, P.1    Emara, M.M.2    Villen, J.3    Gygi, S.P.4    Anderson, P.5
  • 8
    • 84921448966 scopus 로고    scopus 로고
    • Meta-analysis of trna derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
    • Kumar, P., Anaya, J., Mudunuri, S. B., and Dutta, A. (2014). Meta-analysis of trna derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol. 12:78. doi: 10.1186/s12915-014-0078-0.
    • (2014) BMC Biol , vol.12 , pp. 78
    • Kumar, P.1    Anaya, J.2    Mudunuri, S.B.3    Dutta, A.4
  • 9
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)
    • Lee, Y. S., Shibata, Y., Malhotra, A., and Dutta, A. (2009). A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 23, 2639-2649. doi: 10.1101/gad.1837609.
    • (2009) Genes Dev , vol.23 , pp. 2639-2649
    • Lee, Y.S.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 10
    • 84873699920 scopus 로고    scopus 로고
    • Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets
    • Loss-Morais, G., Waterhouse, P. M., and Margis, R. (2013). Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets. Biol. Dir. 8:6. doi: 10.1186/1745-6150-8-6.
    • (2013) Biol. Dir , vol.8 , pp. 6
    • Loss-Morais, G.1    Waterhouse, P.M.2    Margis, R.3
  • 11
    • 84872870536 scopus 로고    scopus 로고
    • tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
    • Maute, R. L., Schneider, C., Sumazin, P., Holmes, A., Califano, A., Basso, K., et al. (2013). tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma. Proc. Natl. Acad. Sci. U.S.A. 110, 1404-1409. doi: 10.1073/pnas.1206761110.
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. 1404-1409
    • Maute, R.L.1    Schneider, C.2    Sumazin, P.3    Holmes, A.4    Califano, A.5    Basso, K.6
  • 12
    • 84867546396 scopus 로고    scopus 로고
    • Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions
    • Nolte-'t Hoen, E. N., Buermans, H. P., Waasdorp, M., Stoorvogel, W., Wauben, M. H., and Hoen, P. A. (2012). Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions. Nucleic Acids Res. 40, 9272-9285. doi: 10.1093/nar/gks658.
    • (2012) Nucleic Acids Res , vol.40 , pp. 9272-9285
    • Nolte-'t Hoen, E.N.1    Buermans, H.P.2    Waasdorp, M.3    Stoorvogel, W.4    Wauben, M.H.5    Hoen, P.A.6
  • 13
    • 84879025267 scopus 로고    scopus 로고
    • Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells
    • Sobala, A., and Hutvagner, G. (2013). Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells. RNA Biol. 10, 553-563. doi: 10.4161/rna.24285.
    • (2013) RNA Biol , vol.10 , pp. 553-563
    • Sobala, A.1    Hutvagner, G.2
  • 15
    • 67650604265 scopus 로고    scopus 로고
    • Stressing out over tRNA cleavage
    • Thompson, D. M., and Parker, R. (2009). Stressing out over tRNA cleavage. Cell 138, 215-219. doi: 10.1016/j.cell.2009.07.001.
    • (2009) Cell , vol.138 , pp. 215-219
    • Thompson, D.M.1    Parker, R.2
  • 16
    • 84873409537 scopus 로고    scopus 로고
    • Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection
    • Wang, Q., Lee, I., Ren, J., Ajay, S. S., Lee, Y. S., and Bao, X. (2013). Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection. Mol. Ther. 21, 368-379. doi: 10.1038/mt.2012.237.
    • (2013) Mol. Ther , vol.21 , pp. 368-379
    • Wang, Q.1    Lee, I.2    Ren, J.3    Ajay, S.S.4    Lee, Y.S.5    Bao, X.6
  • 17
    • 84879446930 scopus 로고    scopus 로고
    • Estimation of sequencing error rates in short reads
    • Wang, X. V., Blades, N., Ding, J., Sultana, R., and Parmigiani, G. (2012). Estimation of sequencing error rates in short reads. BMC Bioinform. 13:185. doi: 10.1186/1471-2105-13-185.
    • (2012) BMC Bioinform , vol.13 , pp. 185
    • Wang, X.V.1    Blades, N.2    Ding, J.3    Sultana, R.4    Parmigiani, G.5
  • 18
    • 84899670330 scopus 로고    scopus 로고
    • Identification and characterization of an ancient class of small RNAs enriched in serum associating with active infection
    • Zhang, Y., Zhang, Y., Shi, J., Zhang, H., Cao, Z., Gao, X., et al. (2014). Identification and characterization of an ancient class of small RNAs enriched in serum associating with active infection. J. Mol. Cell Biol. 6, 172-174. doi: 10.1093/jmcb/mjt052.
    • (2014) J. Mol. Cell Biol , vol.6 , pp. 172-174
    • Zhang, Y.1    Zhang, Y.2    Shi, J.3    Zhang, H.4    Cao, Z.5    Gao, X.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.