-
2
-
-
84930473759
-
Group A Streptococcus emm gene types in pharyngeal isolates, Ontario, Canada, 2002–2010
-
Shea PR, Ewbank AL, Gonzalez-Lugo JH, Martagon-Rosado AJ, Martinez-Gutierrez JC, Rehman HA, Serrano-Gonzalez M, Fittipaldi N, Beres SB, Flores AR, Low DE, Willey BM, Musser JM. 2011. Group A Streptococcus emm gene types in pharyngeal isolates, Ontario, Canada, 2002–2010. Emerg Infect Dis 17:2010–2017. http://dx.doi.org/10.3201/eid1711.110159
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 2010-2017
-
-
Shea, P.R.1
Ewbank, A.L.2
Gonzalez-Lugo, J.H.3
Martagon-Rosado, A.J.4
Martinez-Gutierrez, J.C.5
Rehman, H.A.6
Serrano-Gonzalez, M.7
Fittipaldi, N.8
Beres, S.B.9
Flores, A.R.10
Low, D.E.11
Willey, B.M.12
Musser, J.M.13
-
3
-
-
34547639552
-
Molecular and clinical characteristics of invasive group A streptococcal infection in Sweden
-
Darenberg J, Luca-Harari B, Jasir A, Sandgren A, Pettersson H, Schalén C, Norgren M, Romanus V, Norrby-Teglund A, Normark BH. 2007. Molecular and clinical characteristics of invasive group A streptococcal infection in Sweden. Clin Infect Dis 45:450–458. http://dx.doi.org/10.1086/519936
-
(2007)
Clin Infect Dis
, vol.45
, pp. 450-458
-
-
Darenberg, J.1
Luca-Harari, B.2
Jasir, A.3
Sandgren, A.4
Pettersson, H.5
Schalén, C.6
Norgren, M.7
Romanus, V.8
Norrby-Teglund, A.9
Normark, B.H.10
-
4
-
-
84872274958
-
The Portuguese Group for the Study of Streptococcal Infections
-
Friães A, Pinto FR, Silva-Costa C, Ramirez M, Melo-Cristino J, The Portuguese Group for the Study of Streptococcal Infections. 2012. Group A streptococci clones associated with invasive infections and pharyngitis in Portugal present differences in emm types, superantigen gene content and antimicrobial resistance. BMC Microbiol 12:280. http://dx.doi.org/10.1186/1471-2180-12-280
-
(2012)
BMC Microbiol
, vol.12
-
-
Friães, A.1
Pinto, F.R.2
Silva-Costa, C.3
Ramirez, M.4
Melo-Cristino, J.5
-
5
-
-
77949401242
-
Epidemiology of invasive Streptococcus pyogenes disease in Germany during 2003–2007
-
Imöhl M, Reinert RR, Ocklenburg C, van der Linden M. 2010. Epidemiology of invasive Streptococcus pyogenes disease in Germany during 2003–2007. FEMS Immunol Med Microbiol 58:389–396. http://dx.doi.org/10.1111/j.1574-695X.2010.00652.x
-
(2010)
FEMS Immunol Med Microbiol
, vol.58
, pp. 389-396
-
-
Imöhl, M.1
Reinert, R.R.2
Ocklenburg, C.3
Van Der Linden, M.4
-
6
-
-
82455186826
-
Epidemiology of invasive Streptococcus pyogenes infections in France in 2007
-
Lepoutre A, Doloy A, Bidet P, Leblond A, Perrocheau A, Bingen E, Trieu-Cuot P, Bouvet A, Poyart C, Lévy-Bruhl D, Microbiologists of the Epibac Network. 2011. Epidemiology of invasive Streptococcus pyogenes infections in France in 2007. J Clin Microbiol 49:4094–4100. http://dx.doi.org/10.1128/JCM.00070-11
-
(2011)
J Clin Microbiol
, vol.49
, pp. 4094-4100
-
-
Lepoutre, A.1
Doloy, A.2
Bidet, P.3
Leblond, A.4
Perrocheau, A.5
Bingen, E.6
Trieu-Cuot, P.7
Bouvet, A.8
Poyart, C.9
Lévy-Bruhl, D.10
-
7
-
-
65249093620
-
Clinical and microbiological characteristics of severe Streptococcus pyogenes disease in Europe
-
Luca-Harari B, Darenberg J, Neal S, Siljander T, Strakova L, Tanna A, Creti R, Ekelund K, Koliou M, Tassios PT, van der Linden M, Straut M, Vuopio-Varkila J, Bouvet A, Efstratiou A, Schalén C, Henriques- Normark B, Strep-EURO Study Group, Jasir A. 2009. Clinical and microbiological characteristics of severe Streptococcus pyogenes disease in Europe. J Clin Microbiol 47:1155–1165. http://dx.doi.org/10.1128/JCM.02155-08
-
(2009)
J Clin Microbiol
, vol.47
, pp. 1155-1165
-
-
Luca-Harari, B.1
Darenberg, J.2
Neal, S.3
Siljander, T.4
Strakova, L.5
Tanna, A.6
Creti, R.7
Ekelund, K.8
Koliou, M.9
Tassios, P.T.10
Van Der Linden, M.11
Straut, M.12
Vuopio-Varkila, J.13
Bouvet, A.14
Efstratiou, A.15
Schalén, C.16
Henriques-Ormark, B.17
Jasir, A.18
-
8
-
-
80054734723
-
Epidemiological and molecular analysis of Streptococcus pyogenes isolates causing invasive disease in Spain (1998 –2009): Compar- ison with non-invasive isolates
-
Montes M, Ardanuy C, Tamayo E, Domènech A, Liñares J, Pérez- Trallero E. 2011. Epidemiological and molecular analysis of Streptococcus pyogenes isolates causing invasive disease in Spain (1998 –2009): compar- ison with non-invasive isolates. Eur J Clin Microbiol Infect Dis 30: 1295–1302. http://dx.doi.org/10.1007/s10096-011-1226-x
-
(2011)
Eur J Clin Microbiol Infect Dis
, vol.30
, pp. 1295-1302
-
-
Montes, M.1
Ardanuy, C.2
Tamayo, E.3
Domènech, A.4
Liñares, J.5
Pérez-Rallero, E.6
-
9
-
-
34848846150
-
The epidemiology of invasive group A streptococcal infection and potential vaccine implications: United States, 2000 –2004
-
O’Loughlin RE, Roberson A, Cieslak PR, Lynfield R, Gershman K, Craig A, Albanese BA, Farley MM, Barrett NL, Spina NL, Beall B, Harrison LH, Reingold A, Van Beneden C, Active Bacterial Core Surveillance Team. 2007. The epidemiology of invasive group A streptococcal infection and potential vaccine implications: United States, 2000 –2004. Clin Infect Dis 45:853–862. http://dx.doi.org/10.1086/521264
-
(2007)
Clin Infect Dis
, vol.45
, pp. 853-862
-
-
O’Loughlin, R.E.1
Roberson, A.2
Cieslak, P.R.3
Lynfield, R.4
Gershman, K.5
Craig, A.6
Albanese, B.A.7
Farley, M.M.8
Barrett, N.L.9
Spina, N.L.10
Beall, B.11
Harrison, L.H.12
Reingold, A.13
Van Beneden, C.14
-
10
-
-
84861307846
-
Invasive group A streptococcal infections in adults, France (2006 –2010)
-
Plainvert C, Doloy A, Loubinoux J, Lepoutre A, Collobert G, Touak G, Trieu-Cuot P, Bouvet A, Poyart C. 2012. Invasive group A streptococcal infections in adults, France (2006 –2010). Clin Microbiol Infect 18: 702–710. http://dx.doi.org/10.1111/j.1469-0691.2011.03624.x
-
(2012)
Clin Microbiol Infect
, vol.18
, pp. 702-710
-
-
Plainvert, C.1
Doloy, A.2
Loubinoux, J.3
Lepoutre, A.4
Collobert, G.5
Touak, G.6
Trieu-Cuot, P.7
Bouvet, A.8
Poyart, C.9
-
11
-
-
79957667053
-
Invasive group A streptococcal infection and vaccine implications, Auckland, New Zealand
-
Safar A, Lennon D, Stewart J, Trenholme A, Drinkovic D, Peat B, Taylor S, Read K, Roberts S, Voss L. 2011. Invasive group A streptococcal infection and vaccine implications, Auckland, New Zealand. Emerg Infect Dis 17:983–989. http://dx.doi.org/10.3201/eid/1706.100804
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 983-989
-
-
Safar, A.1
Lennon, D.2
Stewart, J.3
Trenholme, A.4
Drinkovic, D.5
Peat, B.6
Taylor, S.7
Read, K.8
Roberts, S.9
Voss, L.10
-
12
-
-
84888879244
-
Streptococcus pyogenes emm
-
Tamayo E, Montes M, García-Arenzana JM, Pérez-Trallero E. 2014. Streptococcus pyogenes emm-types in northern Spain; population dynamics over a 7-year period. J Infect 68:50–57. http://dx.doi.org/10.1016/j.jinf.2013.08.013
-
(2014)
J Infect
, vol.68
, pp. 50-57
-
-
Tamayo, E.1
Montes, M.2
García-Arenzana, J.M.3
Pérez-Trallero, E.4
-
13
-
-
84863826674
-
Distribution of emm types in invasive and non-invasive group A and G streptococci
-
Vähäkuopus S, Vuento R, Siljander T, Syrjänen J, Vuopio J. 2012. Distribution of emm types in invasive and non-invasive group A and G streptococci. Eur J Clin Microbiol Infect Dis 31:1251–1256. http://dx.doi.org/10.1007/s10096-011-1436-2
-
(2012)
Eur J Clin Microbiol Infect Dis
, vol.31
, pp. 1251-1256
-
-
Vähäkuopus, S.1
Vuento, R.2
Siljander, T.3
Syrjänen, J.4
Vuopio, J.5
-
14
-
-
34547627815
-
Emm
-
Creti R, Imperi M, Baldassarri L, Pataracchia M, Recchia S, Alfarone G, Orefici G. 2007. emm types, virulence factors, and antibiotic resistance of invasive Streptococcus pyogenes isolates from Italy: what has changed in 11 years? J Clin Microbiol 45:2249–2256. http://dx.doi.org/10.1128/JCM.00513-07
-
(2007)
J Clin Microbiol
, vol.45
, pp. 2249-2256
-
-
Creti, R.1
Imperi, M.2
Baldassarri, L.3
Pataracchia, M.4
Recchia, S.5
Alfarone, G.6
Orefici, G.7
-
15
-
-
48249121139
-
Outbreak of group A streptococcal throat infection: Don’t forget to ask about food
-
Falkenhorst G, Bagdonaite J, Lisby M, Madsen SB, Lambertsen L, Olsen KE, Mølbak K. 2008. Outbreak of group A streptococcal throat infection: don’t forget to ask about food. Epidemiol Infect 136:1165–1171. http://dx.doi.org/10.1017/S0950268807009764
-
(2008)
Epidemiol Infect
, vol.136
, pp. 1165-1171
-
-
Falkenhorst, G.1
Bagdonaite, J.2
Lisby, M.3
Madsen, S.B.4
Lambertsen, L.5
Olsen, K.E.6
Mølbak, K.7
-
16
-
-
84877120180
-
A probable foodborne outbreak of pharyngitis after a massive rainstorm in Beijing, caused by emm89 group A Streptococcus rarely found in China
-
Yang P, Peng X, Yang J, Dong X, Zhang M, Wang Q. 2013. A probable foodborne outbreak of pharyngitis after a massive rainstorm in Beijing, caused by emm89 group A Streptococcus rarely found in China. Int J Infect Dis 17:e471. http://dx.doi.org/10.1016/j.ijid.2012.12.018
-
(2013)
Int J Infect Dis
, vol.17
-
-
Yang, P.1
Peng, X.2
Yang, J.3
Dong, X.4
Zhang, M.5
Wang, Q.6
-
17
-
-
79960967240
-
The impact of recombination on dN/dS within recently emerged bacterial clones
-
Castillo-Ramírez S, Harris SR, Holden MT, He M, Parkhill J, Bentley SD, Feil EJ. 2011. The impact of recombination on dN/dS within recently emerged bacterial clones. PLoS Pathog 7:e1002129. http://dx.doi.org/10.1371/journal.ppat.1002129
-
(2011)
Plos Pathog
, vol.7
-
-
Castillo-Ramírez, S.1
Harris, S.R.2
Holden, M.T.3
He, M.4
Parkhill, J.5
Bentley, S.D.6
Feil, E.J.7
-
18
-
-
85027933961
-
Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance
-
Davies MR, Holden MT, Coupland P, Chen JH, Venturini C, Barnett TC, Zakour NL, Tse H, Dougan G, Yuen KY, Walker MJ. 2015. Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance. Nat Genet 47:84–87. http://dx.doi.org/10.1038/ng.3147
-
(2015)
Nat Genet
, vol.47
, pp. 84-87
-
-
Davies, M.R.1
Holden, M.T.2
Coupland, P.3
Chen, J.H.4
Venturini, C.5
Barnett, T.C.6
Zakour, N.L.7
Tse, H.8
Dougan, G.9
Yuen, K.Y.10
Walker, M.J.11
-
19
-
-
84899645046
-
Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences
-
Nasser W, Beres SB, Olsen RJ, Dean MA, Rice KA, Long SW, Kristinsson KG, Gottfredsson M, Vuopio J, Raisanen K, Caugant DA, Steinbakk M, Low DE, McGeer A, Darenberg J, Henriques-Normark B, Van Beneden CA, Hoffmann S, Musser JM. 2014. Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences. Proc Natl Acad Sci U S A 111: E1768–E1776. http://dx.doi.org/10.1073/pnas.1403138111
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. E1768-E1776
-
-
Nasser, W.1
Beres, S.B.2
Olsen, R.J.3
Dean, M.A.4
Rice, K.A.5
Long, S.W.6
Kristinsson, K.G.7
Gottfredsson, M.8
Vuopio, J.9
Raisanen, K.10
Caugant, D.A.11
Steinbakk, M.12
Low, D.E.13
McGeer, A.14
Darenberg, J.15
Henriques-Normark, B.16
Van Beneden, C.A.17
Hoffmann, S.18
Musser, J.M.19
-
20
-
-
0036438817
-
Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370
-
Canchaya C, Desiere F, McShan WM, Ferretti JJ, Parkhill J, Brüssow H. 2002. Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370. Virology 302: 245–258. http://dx.doi.org/10.1006/viro.2002.1570
-
(2002)
Virology
, vol.302
, pp. 245-258
-
-
Canchaya, C.1
Desiere, F.2
McShan, W.M.3
Ferretti, J.J.4
Parkhill, J.5
Brüssow, H.6
-
21
-
-
0036229616
-
NAD+- glycohydrolase acts as an intracellular toxin to enhance the extracellular survival of group A streptococci
-
Bricker AL, Cywes C, Ashbaugh CD, Wessels MR. 2002. NAD+- glycohydrolase acts as an intracellular toxin to enhance the extracellular survival of group A streptococci. Mol Microbiol 44:257–269. http://dx.doi.org/10.1046/j.1365-2958.2002.02876.x
-
(2002)
Mol Microbiol
, vol.44
, pp. 257-269
-
-
Bricker, A.L.1
Cywes, C.2
Ashbaugh, C.D.3
Wessels, M.R.4
-
22
-
-
3042611531
-
Specificity of streptolysin O in cytolysinmediated translocation
-
Meehl MA, Caparon MG. 2004. Specificity of streptolysin O in cytolysinmediated translocation. Mol Microbiol 52:1665–1676. http://dx.doi.org/10.1111/j.1365-2958.2004.04082.x
-
(2004)
Mol Microbiol
, vol.52
, pp. 1665-1676
-
-
Meehl, M.A.1
Caparon, M.G.2
-
23
-
-
84880049908
-
Analysis of polymorphic residues reveals distinct enzymatic and cytotoxic activities of the Streptococcus pyogenes NAD+ glycohydrolase
-
Chandrasekaran S, Ghosh J, Port GC, Koh EI, Caparon MG. 2013. Analysis of polymorphic residues reveals distinct enzymatic and cytotoxic activities of the Streptococcus pyogenes NAD+ glycohydrolase. J Biol Chem 288:20064–20075. http://dx.doi.org/10.1074/jbc.M113.481556
-
(2013)
J Biol Chem
, vol.288
, pp. 20064-20075
-
-
Chandrasekaran, S.1
Ghosh, J.2
Port, G.C.3
Koh, E.I.4
Caparon, M.G.5
-
24
-
-
77954406572
-
Variation in Streptococcus pyogenes NAD+ glycohydrolase is associated with tissue tropism
-
Riddle DJ, Bessen DE, Caparon MG. 2010. Variation in Streptococcus pyogenes NAD+ glycohydrolase is associated with tissue tropism. J Bacteriol 192:3735–3746. http://dx.doi.org/10.1128/JB.00234-10
-
(2010)
J Bacteriol
, vol.192
, pp. 3735-3746
-
-
Riddle, D.J.1
Bessen, D.E.2
Caparon, M.G.3
-
25
-
-
23944451658
-
Evolutionary origin and emergence of a highly successful clone of serotype M1 group A Streptococcus involved multiple horizontal gene transfer events
-
Sumby P, Porcella SF, Madrigal AG, Barbian KD, Virtaneva K, Ricklefs SM, Sturdevant DE, Graham MR, Vuopio-Varkila J, Hoe NP, Musser JM. 2005. Evolutionary origin and emergence of a highly successful clone of serotype M1 group A Streptococcus involved multiple horizontal gene transfer events. J Infect Dis 192:771–782. http://dx.doi.org/10.1086/432514
-
(2005)
J Infect Dis
, vol.192
, pp. 771-782
-
-
Sumby, P.1
Porcella, S.F.2
Madrigal, A.G.3
Barbian, K.D.4
Virtaneva, K.5
Ricklefs, S.M.6
Sturdevant, D.E.7
Graham, M.R.8
Vuopio-Varkila, J.9
Hoe, N.P.10
Musser, J.M.11
-
26
-
-
84892851667
-
RocA truncation underpins hyper-encapsulation, carriage longevity and transmissibility of serotype M18 group A streptococci
-
Lynskey NN, Goulding D, Gierula M, Turner CE, Dougan G, Edwards RJ, Sriskandan S. 2013. RocA truncation underpins hyper-encapsulation, carriage longevity and transmissibility of serotype M18 group A streptococci. PLoS Pathog 9:e1003842. http://dx.doi.org/10.1371/journal.ppat.1003842
-
(2013)
Plos Pathog
, vol.9
-
-
Lynskey, N.N.1
Goulding, D.2
Gierula, M.3
Turner, C.E.4
Dougan, G.5
Edwards, R.J.6
Sriskandan, S.7
-
27
-
-
33645776051
-
Genome-wide analysis of group A streptococci reveals a mutation that modulates global phenotype and disease specificity
-
Sumby P, Whitney AR, Graviss EA, DeLeo FR, Musser JM. 2006. Genome-wide analysis of group A streptococci reveals a mutation that modulates global phenotype and disease specificity. PLoS Pathog 2:e5. http://dx.doi.org/10.1371/journal.ppat.0020005
-
(2006)
Plos Pathog
, vol.2
-
-
Sumby, P.1
Whitney, A.R.2
Graviss, E.A.3
Deleo, F.R.4
Musser, J.M.5
-
28
-
-
84872166220
-
Human disease isolates of serotype M4 and M22 group A streptococcus lack genes required for hyaluronic acid capsule biosynthesis
-
Flores AR, Jewell BE, Fittipaldi N, Beres SB, Musser JM. 2012. Human disease isolates of serotype M4 and M22 group A streptococcus lack genes required for hyaluronic acid capsule biosynthesis. mBio 3(6):e00413-12. http://dx.doi.org/10.1128/mBio.00413-12
-
(2012)
Mbio
, vol.3
, Issue.6
-
-
Flores, A.R.1
Jewell, B.E.2
Fittipaldi, N.3
Beres, S.B.4
Musser, J.M.5
-
29
-
-
0033860082
-
Bacterial determinants of persistent throat colonization and the associated immune response in a primate model of human group A streptococcal pharyngeal infection
-
Ashbaugh CD, Moser TJ, Shearer MH, White GL, Kennedy RC, Wessels MR. 2000. Bacterial determinants of persistent throat colonization and the associated immune response in a primate model of human group A streptococcal pharyngeal infection. Cell Microbiol 2:283–292. http://dx.doi.org/10.1046/j.1462-5822.2000.00050.x
-
(2000)
Cell Microbiol
, vol.2
, pp. 283-292
-
-
Ashbaugh, C.D.1
Moser, T.J.2
Shearer, M.H.3
White, G.L.4
Kennedy, R.C.5
Wessels, M.R.6
-
30
-
-
0032145096
-
Molecular analysis of the role of the group A streptococcal cysteine protease, hyaluronic acid capsule, andMprotein in a murine model of human invasive soft-tissue infection
-
Ashbaugh CD, Warren HB, Carey VJ, Wessels MR. 1998. Molecular analysis of the role of the group A streptococcal cysteine protease, hyaluronic acid capsule, andMprotein in a murine model of human invasive soft-tissue infection. J Clin Invest 102:550–560. http://dx.doi.org/10.1172/JCI3065
-
(1998)
J Clin Invest
, vol.102
, pp. 550-560
-
-
Ashbaugh, C.D.1
Warren, H.B.2
Carey, V.J.3
Wessels, M.R.4
-
31
-
-
0033787963
-
CD44 as a receptor for colonization of the pharynx by group A Streptococcus
-
Cywes C, Stamenkovic I, Wessels MR. 2000. CD44 as a receptor for colonization of the pharynx by group A Streptococcus. J Clin Invest 106: 995–1002. http://dx.doi.org/10.1172/JCI10195
-
(2000)
J Clin Invest
, vol.106
, pp. 995-1002
-
-
Cywes, C.1
Stamenkovic, I.2
Wessels, M.R.3
-
32
-
-
0029922220
-
Hyaluronate capsule and surface M protein in resistance to opsonization of group A streptococci
-
Dale JB, Washburn RG, Marques MB, Wessels MR. 1996. Hyaluronate capsule and surface M protein in resistance to opsonization of group A streptococci. Infect Immun 64:1495–1501
-
(1996)
Infect Immun
, vol.64
, pp. 1495-1501
-
-
Dale, J.B.1
Washburn, R.G.2
Marques, M.B.3
Wessels, M.R.4
-
33
-
-
0030909888
-
Role of putative virulence factors of Streptococcus pyogenes in mouse models of long-term throat colonization and pneumonia
-
Husmann LK, Yung DL, Hollingshead SK, Scott JR. 1997. Role of putative virulence factors of Streptococcus pyogenes in mouse models of long-term throat colonization and pneumonia. Infect Immun 65: 1422–1430
-
(1997)
Infect Immun
, vol.65
, pp. 1422-1430
-
-
Husmann, L.K.1
Yung, D.L.2
Hollingshead, S.K.3
Scott, J.R.4
-
34
-
-
0031027334
-
Relative contributions of hyaluronic acid capsule and M protein to virulence in a mucoid strain of the group A Streptococcus
-
Moses AE, Wessels MR, Zalcman K, Albertí S, Natanson-Yaron S, Menes T, Hanski E. 1997. Relative contributions of hyaluronic acid capsule and M protein to virulence in a mucoid strain of the group A Streptococcus. Infect Immun 65:64–71
-
(1997)
Infect Immun
, vol.65
, pp. 64-71
-
-
Moses, A.E.1
Wessels, M.R.2
Zalcman, K.3
Albertí, S.4
Natanson-Yaron, S.5
Menes, T.6
Hanski, E.7
-
35
-
-
0026048266
-
Hyaluronic acid capsule is a virulence factor for mucoid group A streptococci
-
Wessels MR, Moses AE, Goldberg JB, DiCesare TJ. 1991. Hyaluronic acid capsule is a virulence factor for mucoid group A streptococci. Proc Natl Acad Sci U S A 88:8317–8321. http://dx.doi.org/10.1073/pnas.88.19.8317
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 8317-8321
-
-
Wessels, M.R.1
Moses, A.E.2
Goldberg, J.B.3
Dicesare, T.J.4
-
36
-
-
84901447320
-
Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus
-
Everitt RG, Didelot X, Batty EM, Miller RR, Knox K, Young BC, Bowden R, Auton A, Votintseva A, Larner-Svensson H, Charlesworth J, Golubchik T, Ip CL, Godwin H, Fung R, Peto TE, Walker AS, Crook DW, Wilson DJ. 2014. Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus. Nat Commun 5:3956. http://dx.doi.org/10.1038/ncomms4956
-
(2014)
Nat Commun
, vol.5
-
-
Everitt, R.G.1
Didelot, X.2
Batty, E.M.3
Miller, R.R.4
Knox, K.5
Young, B.C.6
Bowden, R.7
Auton, A.8
Votintseva, A.9
Larner-Svensson, H.10
Charlesworth, J.11
Golubchik, T.12
Ip, C.L.13
Godwin, H.14
Fung, R.15
Peto, T.E.16
Walker, A.S.17
Crook, D.W.18
Wilson, D.J.19
-
37
-
-
84920645668
-
Horizontal gene transfer and recombination in Streptococcus dysgalactiae subsp. equisimilis
-
McNeilly CL, McMillan DJ. 2014. Horizontal gene transfer and recombination in Streptococcus dysgalactiae subsp. equisimilis. Front Microbiol 5:676. http://dx.doi.org/10.3389/fmicb.2014.00676
-
(2014)
Front Microbiol
, vol.5
-
-
McNeilly, C.L.1
McMillan, D.J.2
-
38
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguenec C, Lescat M, Mangenot S, Martinez-Jehanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Medigue C, Rocha EP, Denamur E. 2009. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5:e1000344. http://dx.doi.org/10.1371/journal.pgen.1000344
-
(2009)
Plos Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
Bidet, P.6
Bingen, E.7
Bonacorsi, S.8
Bouchier, C.9
Bouvet, O.10
Calteau, A.11
Chiapello, H.12
Clermont, O.13
Cruveiller, S.14
Danchin, A.15
Diard, M.16
Dossat, C.17
Karoui, M.E.18
Frapy, E.19
Garry, L.20
Ghigo, J.M.21
Gilles, A.M.22
Johnson, J.23
Le Bouguenec, C.24
Lescat, M.25
Mangenot, S.26
Martinez-Jehanne, V.27
Matic, I.28
Nassif, X.29
Oztas, S.30
Petit, M.A.31
Pichon, C.32
Rouy, Z.33
Ruf, C.S.34
Schneider, D.35
Tourret, J.36
Vacherie, B.37
Vallenet, D.38
Medigue, C.39
Rocha, E.P.40
Denamur, E.41
more..
-
39
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P, Henikoff S, Ng PC. 2009. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4:1073–1081. http://dx.doi.org/10.1038/nprot.2009.86
-
(2009)
Nat Protoc
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
40
-
-
84906071021
-
Asymptomatic carriage of group A Streptococcus is associated with elimination of capsule production
-
Flores AR, Jewell BE, Olsen RJ, Shelburne SA, III, Fittipaldi N, Beres SB, Musser JM. 2014. Asymptomatic carriage of group A Streptococcus is associated with elimination of capsule production. Infect Immun 82: 3958–3967. http://dx.doi.org/10.1128/IAI.01788-14
-
(2014)
Infect Immun
, vol.82
, pp. 3958-3967
-
-
Flores, A.R.1
Jewell, B.E.2
Olsen, R.J.3
Shelburne, S.A.4
Fittipaldi, N.5
Beres, S.B.6
Musser, J.M.7
-
41
-
-
3042662429
-
Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures
-
McGregor KF, Spratt BG, Kalia A, Bennett A, Bilek N, Beall B, Bessen DE. 2004. Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures. J Bacteriol 186:4285–4294. http://dx.doi.org/10.1128/JB.186.13.4285-4294.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 4285-4294
-
-
McGregor, K.F.1
Spratt, B.G.2
Kalia, A.3
Bennett, A.4
Bilek, N.5
Beall, B.6
Bessen, D.E.7
-
42
-
-
0032900188
-
Emm
-
Facklam R, Beall B, Efstratiou A, Fischetti V, Johnson D, Kaplan E, Kriz P, Lovgren M, Martin D, Schwartz B, Totolian A, Bessen D, Hollingshead S, Rubin F, Scott J, Tyrrell G. 1999. emm typing and validation of provisionalMtypes for group A streptococci. Emerg Infect Dis 5:247–253. http://dx.doi.org/10.3201/eid0502.990209
-
(1999)
Emerg Infect Dis
, vol.5
, pp. 247-253
-
-
Facklam, R.1
Beall, B.2
Efstratiou, A.3
Fischetti, V.4
Johnson, D.5
Kaplan, E.6
Kriz, P.7
Lovgren, M.8
Martin, D.9
Schwartz, B.10
Totolian, A.11
Bessen, D.12
Hollingshead, S.13
Rubin, F.14
Scott, J.15
Tyrrell, G.16
-
43
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to singlecell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to singlecell sequencing. J Comput Biol 19:455–477. http://dx.doi.org/10.1089/cmb.2012.0021
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
44
-
-
66449136667
-
ABySS: A parallel assembler for short read sequence data
-
Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res 19:1117–1123. http://dx.doi.org/10.1101/gr.089532.108
-
(2009)
Genome Res
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.5
Birol, I.6
-
45
-
-
77954506029
-
Gap5—editing the billion fragment sequence assembly
-
Bonfield JK, Whitwham A. 2010. Gap5—editing the billion fragment sequence assembly. Bioinformatics 26:1699–1703. http://dx.doi.org/10.1093/bioinformatics/btq268
-
(2010)
Bioinformatics
, vol.26
, pp. 1699-1703
-
-
Bonfield, J.K.1
Whitwham, A.2
-
46
-
-
84857575618
-
Phylogenetic analysis of protein sequence data using the Randomized Axelerated Maximum Likelihood (RAXML) program
-
19:Unit 19
-
Rokas A. 2011. Phylogenetic analysis of protein sequence data using the Randomized Axelerated Maximum Likelihood (RAXML) program. Curr Protoc Mol Biol Chapter 19:Unit 19.11. http://dx.doi.org/10.1002/0471142727.mb1911s96
-
(2011)
Curr Protoc Mol Biol Chapter
, vol.11
-
-
Rokas, A.1
-
47
-
-
84933069206
-
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
-
Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, Parkhill J, Harris SR. 2015. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res 43:e15. http://dx.doi.org/10.1093/nar/gku1196
-
(2015)
Nucleic Acids Res
, vol.43
-
-
Croucher, N.J.1
Page, A.J.2
Connor, T.R.3
Delaney, A.J.4
Keane, J.A.5
Bentley, S.D.6
Parkhill, J.7
Harris, S.R.8
-
48
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29:1969–1973. http://dx.doi.org/10.1093/molbev/mss075
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
49
-
-
84879426675
-
Molecular analysis of an outbreak of lethal postpartum sepsis caused by Streptococcus pyogenes
-
Turner CE, Dryden M, Holden MT, Davies FJ, Lawrenson RA, Farzaneh L, Bentley SD, Efstratiou A, Sriskandan S. 2013. Molecular analysis of an outbreak of lethal postpartum sepsis caused by Streptococcus pyogenes. J Clin Microbiol 51:2089–2095. http://dx.doi.org/10.1128/JCM.00679-13
-
(2013)
J Clin Microbiol
, vol.51
, pp. 2089-2095
-
-
Turner, C.E.1
Dryden, M.2
Holden, M.T.3
Davies, F.J.4
Lawrenson, R.A.5
Farzaneh, L.6
Bentley, S.D.7
Efstratiou, A.8
Sriskandan, S.9
-
50
-
-
77953715511
-
Genetic switch to hypervirulence reduces colonization phenotypes of the globally disseminated group A Streptococcus M1T1 clone
-
Hollands A, Pence MA, Timmer AM, Osvath SR, Turnbull L, Whitchurch CB, Walker MJ, Nizet V. 2010. Genetic switch to hypervirulence reduces colonization phenotypes of the globally disseminated group A Streptococcus M1T1 clone. J Infect Dis 202:11–19. http://dx.doi.org/10.1086/653124
-
(2010)
J Infect Dis
, vol.202
, pp. 11-19
-
-
Hollands, A.1
Pence, M.A.2
Timmer, A.M.3
Osvath, S.R.4
Turnbull, L.5
Whitchurch, C.B.6
Walker, M.J.7
Nizet, V.8
-
51
-
-
83355164015
-
The streptococcal collagen-like protein-1 (Scl1) is a significant determinant for biofilm formation by group A Streptococcus
-
Oliver-Kozup HA, Elliott M, Bachert BA, Martin KH, Reid SD, Schwegler-Berry DE, Green BJ, Lukomski S. 2011. The streptococcal collagen-like protein-1 (Scl1) is a significant determinant for biofilm formation by group A Streptococcus. BMC Microbiol 11:262. http://dx.doi.org/10.1186/1471-2180-11-262
-
(2011)
BMC Microbiol
, vol.11
-
-
Oliver-Kozup, H.A.1
Elliott, M.2
Bachert, B.A.3
Martin, K.H.4
Reid, S.D.5
Schwegler-Berry, D.E.6
Green, B.J.7
Lukomski, S.8
-
52
-
-
79953306448
-
Easyfig: A genome comparison visualiser
-
Sullivan MJ, Petty NK, Beatson SA. 2011. Easyfig: a genome comparison visualiser. Bioinformatics 27:1009–1010. http://dx.doi.org/10.1093/bioinformatics/btr039.
-
(2011)
Bioinformatics
, vol.27
, pp. 1009-1010
-
-
Sullivan, M.J.1
Petty, N.K.2
Beatson, S.A.3
|