메뉴 건너뛰기




Volumn 31, Issue 17, 2015, Pages 2761-2769

Corrigendum: Using combined evidence from replicates to evaluate ChIP-seq peaks (Bioinformatics (2015) DOI: 10.1093/bioinformatics/btv293);Using combined evidence from replicates to evaluate ChIP-seq peaks

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN; MYC PROTEIN; MYC PROTEIN, HUMAN; PROTEIN BINDING; STUB1 PROTEIN, HUMAN; TRANSCRIPTION FACTOR; UBIQUITIN PROTEIN LIGASE;

EID: 84940785927     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bty119     Document Type: Erratum
Times cited : (52)

References (14)
  • 1
    • 79958090979 scopus 로고    scopus 로고
    • Dreme: Motif discovery in transcription factor chip-seq data
    • Bailey T.L. (2011). DREME: motif discovery in transcription factor ChIP-seq data. Bioinformatics, 27, 1653-1659
    • (2011) Bioinformatics , vol.27 , pp. 1653-1659
    • Bailey, T.L.1
  • 2
    • 84888264156 scopus 로고    scopus 로고
    • Practical guidelines for the comprehensive analysis of ChIP-seq data
    • Bailey T., et al. (2013). Practical guidelines for the comprehensive analysis of ChIP-seq data. PLoS Comput. Biol., 9, e1003326
    • (2013) Plos Comput. Biol , vol.9 , pp. e1003326
    • Bailey, T.1
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical, and powerful approach to multiple testing
    • Benjamini Y., and Hochberg Y. (1995). Controlling the false discovery rate: a practical, and powerful approach to multiple testing. J. R. Stat. Soc. Series B, 289-300
    • (1995) J. R. Stat. Soc. Series B , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 84861964081 scopus 로고    scopus 로고
    • Systematic evaluation of factors influencing chip-seq fidelity
    • Chen Y., et al. (2012). Systematic evaluation of factors influencing ChIP-seq fidelity. Nat. Methods, 9, 609-614
    • (2012) Nat. Methods , vol.9 , pp. 609-614
    • Chen, Y.1
  • 5
    • 34447506667 scopus 로고    scopus 로고
    • Quantifying similarity between motifs
    • Gupta S., et al. (2007). Quantifying similarity between motifs. Genome Biol., 8, R24
    • (2007) Genome Biol , vol.8 , pp. R24
    • Gupta, S.1
  • 6
    • 84922390212 scopus 로고    scopus 로고
    • Jamm: A peak finder for joint analysis of ngs replicates
    • Ibrahim M.M., et al. (2015). JAMM: a peak finder for joint analysis of NGS replicates. Bioinformatics, 31, 48-55
    • (2015) Bioinformatics , vol.31 , pp. 48-55
    • Ibrahim, M.M.1
  • 7
    • 84865777819 scopus 로고    scopus 로고
    • Chip-seq guidelines, and practices of the encode, and modencode consortia
    • Landt S.G., et al. (2012). ChIP-seq guidelines, and practices of the ENCODE, and modENCODE consortia. Genome Res., 22, 1813-1831
    • (2012) Genome Res , vol.22 , pp. 1813-1831
    • Landt, S.G.1
  • 8
    • 79955564639 scopus 로고    scopus 로고
    • Measuring reproducibility of high-throughput experiments
    • Li Q., et al. (2011). Measuring reproducibility of high-throughput experiments. Ann. Appl. Stat., 5, 1752-1779
    • (2011) Ann. Appl. Stat , vol.5 , pp. 1752-1779
    • Li, Q.1
  • 9
    • 84891808382 scopus 로고    scopus 로고
    • Jaspar 2014: An extensively expanded, and updated open-access database of transcription factor binding profiles
    • Mathelier A., et al. (2014). JASPAR 2014: an extensively expanded, and updated open-access database of transcription factor binding profiles. Nucleic Acids Res., 42, D142-D147
    • (2014) Nucleic Acids Res , vol.42 , pp. D142-D147
    • Mathelier, A.1
  • 10
    • 0024554495 scopus 로고
    • A new DNA binding, and dimerization motif in immunoglobulin enhancer binding, daughterless, myod, and myc proteins
    • Murre C., et al. (1989). A new DNA binding, and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins. Cell, 56, 777-783
    • (1989) Cell , vol.56 , pp. 777-783
    • Murre, C.1
  • 11
    • 79960614727 scopus 로고    scopus 로고
    • Zinba integrates local covariates with DNA-seq data to identify broad, and narrow regions of enrichment, even within amplified genomic regions
    • Rashid N.U., et al. (2011). ZINBA integrates local covariates with DNA-seq data to identify broad, and narrow regions of enrichment, even within amplified genomic regions. Genome Biol., 12, R67
    • (2011) Genome Biol , vol.12 , pp. R67
    • Rashid, N.U.1
  • 12
    • 0030762087 scopus 로고    scopus 로고
    • C-myc/max heterodimers bind cooperatively to the e-box sequences located in the first intron of the rat ornithine decarboxylase (odc) gene
    • Walhout A.J., et al. (1997). c-Myc/Max heterodimers bind cooperatively to the E-box sequences located in the first intron of the rat ornithine decarboxylase (ODC) gene. Nucleic Acids Res., 25, 1493-1501
    • (1997) Nucleic Acids Res , vol.25 , pp. 1493-1501
    • Walhout, A.J.1
  • 13
    • 84879357102 scopus 로고    scopus 로고
    • Jmosaics: Joint analysis of multiple chip-seq datasets
    • Zeng X., et al. (2013). jMOSAiCS: joint analysis of multiple ChIP-seq datasets. Genome Biol., 14, R38
    • (2013) Genome Biol , vol.14 , pp. R38
    • Zeng, X.1
  • 14
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of chip-seq (macs
    • Zhang Y., et al. (2008). Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137
    • (2008) Genome Biol , vol.9 , pp. R137
    • Zhang, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.