Identification of novel long non-coding RNAs in triple-negative breast cancer

Oncotarget

Volumn 6, Issue 25, 2015, Pages 21730-21739

  Shen, Xiaokun ^a,b   Xie, Bojian ^a   Ma, Zhaosheng ^a   Yu, Wenjie ^a   Wang, Wenmin ^a   Xu, Dong ^a   Yan, Xinqiang ^a   Chen, Beibei ^c   Yu, Longyao ^d   Li, Jicheng ^b   Chen, Xiaobing ^c   Ding, Kan ^d   Cao, Feilin ^a  

^a WENZHOU MEDICAL UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

^c ZHENGZHOU UNIVERSITY   (China)

^d SHANGHAI INSTITUTE OF MATERIA MEDICA   (China)

Author keywords

Long non coding RNAs; Triple negative breast carcinomas

Indexed keywords

LONG UNTRANSLATED RNA; TUMOR MARKER;

ARTICLE; BIOLOGICAL ACTIVITY; BREAST CARCINOGENESIS; CONTROLLED STUDY; DNA REPLICATION; DOWN REGULATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; MICROARRAY ANALYSIS; MICROTUBULE; RNA ANALYSIS; TRIPLE NEGATIVE BREAST CANCER; UPREGULATION; CLUSTER ANALYSIS; DNA MICROARRAY; FEMALE; GENETICS; POLYMERASE CHAIN REACTION; PROGNOSIS; TISSUE DISTRIBUTION;

BIOMARKERS, TUMOR; CLUSTER ANALYSIS; DNA REPLICATION; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; PROGNOSIS; RNA, LONG NONCODING; TISSUE DISTRIBUTION; TRIPLE NEGATIVE BREAST NEOPLASMS;

EID: 84940777935     PISSN: None     EISSN: 19492553     Source Type: Journal    
DOI: 10.18632/oncotarget.4419     Document Type: Article

References (21)

1. Pal SK, Childs BH, Pegram M (2011) Triple negative breast cancer: unmet medical needs. Breast cancer research and treatment 125:627-636. doi:10.1007/s10549-010-1293-1.
2. Hung T, Chang HY (2010) Long noncoding RNA in genome regulation: prospects and mechanisms. RNA biology 7:582-585.
3. Di Gesualdo F, Capaccioli S, Lulli M (2014) A pathophysiological view of the long non-coding RNA world. Oncotarget 5:10976-10996.
4. Zhao W, Luo J, Jiao S (2014) Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. Scientific reports 4:6591. doi:10.1038/srep06591.
5. Prensner JR, Chinnaiyan AM (2011) The emergence of lncRNAs in cancer biology. Cancer discovery 1:391-407. doi:10.1158/2159-8290.CD-11-0209.
6. Zhang J, Zhang P, Wang L, Piao HL, Ma L (2014) Long non-coding RNA HOTAIR in carcinogenesis and metastasis. Acta biochimica et biophysica Sinica 46:1-5. doi:10.1093/abbs/gmt117.
7. Vikram R, Ramachandran R, Abdul KS (2014) Functional significance of long non-coding RNAs in breast cancer. Breast cancer 21:515-521. doi:10.1007/s12282-014-0554-y.
8. Tu ZQ, Li RJ, Mei JZ, Li XH (2014) Down-regulation of long non-coding RNA GAS5 is associated with the prognosis of hepatocellular carcinoma. International journal of clinical and experimental pathology 7:4303-4309.
9. Pickard MR, Williams GT (2014) Regulation of apoptosis by long non-coding RNA GAS5 in breast cancer cells: implications for chemotherapy. Breast cancer research and treatment 145:359-370. doi:10.1007/s10549-014-2974-y.
10. Guttman M, Rinn JL (2012) Modular regulatory principles of large non-coding RNAs. Nature 482:339-346. doi:10.1038/nature10887.
11. Chisholm KM, Wan Y, Li R, Montgomery KD, Chang HY, West RB (2012) Detection of long non-coding RNA in archival tissue: correlation with polycomb protein expression in primary and metastatic breast carcinoma. PloS one 7:e47998. doi:10.1371/journal.pone.0047998.
12. Reiche K, Kasack K, Schreiber S, Luders T, Due EU, Naume B, Riis M, Kristensen VN, Horn F, Borresen-Dale AL, Hackermuller J, Baumbusch LO (2014) Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes. PloS one 9:e106076. doi:10.1371/journal.pone.0106076.
13. Meng J, Li P, Zhang Q, Yang Z, Fu S (2014) A four-long non-coding RNA signature in predicting breast cancer survival. Journal of experimental & clinical cancer research: CR 33:84. doi:10.1186/s13046-014-0084-7.
14. Su X, Malouf GG, Chen Y, Zhang J, Yao H, Valero V, Weinstein JN, Spano JP, Meric-Bernstam F, Khayat D, Esteva FJ (2014) Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes. Oncotarget 5:9864-9876.
15. Gumireddy K, Li A, Yan J, Setoyama T, Johannes GJ, Orom UA, Tchou J, Liu Q, Zhang L, Speicher DW, Calin GA, Huang Q (2013) Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step. The EMBO journal 32:2672-2684. doi:10.1038/emboj.2013.188.
16. Guo L, Zhao Y, Yang S, Zhang H, Wu Q, Chen F (2014) An integrated evolutionary analysis of miRNA-lncRNA in mammals. Molecular biology reports 41:201-207. doi:10.1007/s11033-013-2852-4.
17. Xing Z, Lin A, Li C, Liang K, Wang S, Liu Y, Park PK, Qin L, Wei Y, Hawke DH, Hung MC, Lin C, Yang L (2014) lncRNA Directs Cooperative Epigenetic Regulation Downstream of Chemokine Signals. Cell 159:1110-1125. doi:10.1016/j.cell.2014.10.013.
18. Yang X, Gao L, Guo X, Shi X, Wu H, Song F, Wang B (2014) A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases. PloS one 9:e87797. doi:10.1371/journal.pone.0087797.
19. Vleugel MM, Shvarts D, van der Wall E, van Diest PJ (2006) p300 and p53 levels determine activation of HIF-1 downstream targets in invasive breast cancer. Human pathology 37:1085-1092. doi:10.1016/j.humpath.2006.03.015.
20. Bryan EJ, Jokubaitis VJ, Chamberlain NL, Baxter SW, Dawson E, Choong DY, Campbell IG (2002) Mutation analysis of EP300 in colon, breast and ovarian carcinomas. International journal of cancer Journal international du cancer 102:137-141. doi:10.1002/ijc.10682.
21. Ngwenya S, Safe S (2003) Cell context-dependent differences in the induction of E2F-1 gene expression by 17 beta-estradiol in MCF-7 and ZR-75 cells. Endocrinology 144:1675-1685. doi:10.1210/en.2002-0009.