Molecular characterization and expression analysis of interferon γ (IFN-γ) gene in Labeo rohita (Ham.)

Aquaculture Reports

Volumn 2, Issue , 2015, Pages 97-105

  Parhi, Janmejay ^a   Sahoo, Lopamudra ^b   Choudhury, Jyotibrata ^a   Choudhury, Tanmoy Gon ^a,d   Baruah, Arunjyoti ^a   Paniprasad, K ^c   Makesh, M ^c  

^a College of Fisheries ^*  (India)

^b ICAR RESEARCH COMPLEX FOR NEH REGION   (India)

^c CENTRAL INSTITUTE OF FISHERIES EDUCATION   (India)

^d ICAR INDIAN INSTITUTE OF AGRICULTURAL BIOTECHNOLOGY   (India)

Author keywords

Characterization; Expression analysis; Interferon

Indexed keywords

EID: 84940705502     PISSN: None     EISSN: 23525134     Source Type: Journal    
DOI: 10.1016/j.aqrep.2015.08.007     Document Type: Article

References (32)

1. J.A. Arts, E.J. Tijhaar, M. Chadzinska, H.F. Savelkoul, and B.M. Verburg-van Kemenade Functional analysis of carp interferon-gamma: evolutionary conservation of classical phagocyte activation Fish Shellfish Immunol. 29 2010 793 802 10.1016/j.fsi.2010.07.010
2. D. Bendtsen, H. Nielsen, G. Heijne, and S. Brunak Improved prediction of signal peptides: signalP 3.0 J. Mol. Biol. 340 2004 783 795
3. U. Boehm, T. Klamp, M. Groot, and J.C. Howard Cellular responses to interferongamma Annu. Rev. Immunol. 15 1997 749 795
4. W.Q. Chen, Q.Q. Xu, M.X. Chang, J. Zou, J.C. Secombes, K.M. Peng, and P. Nie Molecular characterization and expression analysis of the IFN-gamma releated gene (IFN-γrel) in grass carp Ctenopharyngodon idella Vet. Immunol. Immunolpatho. 134 2010 199 207
5. W.D. Eaton Antiviral activity in 4 species of salmonids following exposure to poly inosinic - cytidylic acid Dis. Aquat. Org. 9 3 1990 193 198
6. F.J. Fuller, and P.I. Marcus Interferon induction by viruses. Sindbis virus: defective-interfering particles temperature-sensitive for interferon induction J. Gen. Virol. 48 1980 391 394
7. M.A. Frohman RACE: rapid amplification of cDNA ends M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White, PCR Protocols: A Guide to Methods and Applications 1990 Academic Press New York 28 38
8. A. Gattoni, A. Parlato, B. Vangieri, M. Bresciani, and R. Derna Interferon- gamma: biologic function and HCV therapy (type I/II) (1 of 2 parts) Clin. Ther. 157 2006 377 386
9. L. Grayfer, E.G. Garcia, and M. Belosevic Comparison of macrophage antimicrobial responses induced by type II interferons of the goldfish (Carassius auratus L.) J. Biol. Chem. 285 2010 23537 23547
10. L. Grayfer, and M. Belosevic Molecular characterization, expression and functional analysis of goldfish (Carassius auratus L.) interferon gamma Dev. Comp. Immunol. 33 2009 235 246
11. M. Ho Induction and inducers of interferon A. Billiau, Interferon I, General and Applied Aspects 1984 Elsevier Amsterdam 79 124
12. D. Igawa, M. Sakai, and R. Savan An unexpected discovery of two interferon gamma-like genes along with interleukin (IL)-22 and -26 from teleost: IL-22 and -26 genes have been described for the first time outside mammals Mol. Immunol. 43 2006 999 1009
13. I. Jensen, R. Larsen, and B. Robertsen An antiviral state induced in Chinook salmon embryo cells (CHSE-214) by transfection with the double-stranded RNA poly I:C Fish Shellfish Immunol. 13 5 2002 367 378
14. I. Jensen, and B. Robertsen Effect of double-stranded RNA and interferon on the antiviral activity of Atlantic salmon s against infectious salmon anemia virus and infectious pancreatic necrosis virus Fish Shellfish Immunol. 13 3 2002 221 241
15. L.A. Kelley, and M.J.E. Sternberg Protein structure prediction on the Web: a case study using the Phyre server Nat. Protoc. 4 3 2009 363
16. P.De. Kinkelin, M. Dorson, and A. Hattenberger-Baudouy Interferon-synthesis in trout and carp after viral infection Dev. Comp. Immunol. 2 1982 167 174
17. P.De. Kinkelin, and M. Dorson Interferon production in rainbow trout (Salmo gairdneri) experimentally infected with Egtved virus J. Gen. Virol. 19 1 1973 125 127
18. S. Kumar, J. Dudley, M. Nei, and K. Tamura MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences Brief. Bioinform. 9 2008 299 306
19. I. Milev-Milovanovic, S. Long, M. Wilson, E. Bengten, N.W. Miller, and V.G. Chinchar Identification and expression analysis of interferon gamma genes in channel catfish Immunogenetics 58 2006 70 80
20. R. Nygaard, S. Husgård, A.I. Sommer, J.A.C. Leong, and B. Robertsen Induction of Mx-protein by interferon and double-stranded RNA in salmonid cells Fish Shellfish Immunol. 10 5 2000 435 450
21. M.W. Pfaffl A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res. 29 2001 2002 2007 10.1093/nar/29.9.e45
22. B. Robertsen The interferon system of teleost fish Fish Shellfish Immunol. 20 2006 172 191
23. J. Sambrook, and D.W. Russel Molecular Cloning: A Laboratory Manual 3rd ed. 2001 Cold Spring Harbor Laboratory Press New York
24. C.E. Samuel Antiviral actions of interferons Clin. Microbiol. Rev. 14 4 2001 778 809
25. E.H. Stolte, H.F. Savelkoul, G. Wiegertjes, G. Flik, and B.M. Lidy Verburg-van Kemenade Differential expression of two interferon-gamma genes in common carp (Cyprinus carpio L.) Dev. Comp. Immunol. 32 2008 1467 1481
26. A. Sunarto, and K.A. McColl Expression of immune-related genes of common carp during cyprinid herpesvirus 3 infection Dis. Aquat. Organ. 9 113 (2) 2015 127 135
27. B. Sun, B. Robertsen, Z. Wang, and B. Liu Identification of an Atlantic salmon IFN multigene cluster encoding three IFN subtypes with very different expression properties Dev. Comp. Immunol. 33 2009 547 558
28. J. Su, Z. Zhu, and Y. Wang Molecular cloning, characterization and expression analysis of the PKZ gene in rare minnow Gobiocypris rarus Fish Shellfish Immunol. 25 2008 106 113
29. J. Vilcek, and G.C. Sen Interferons and other cytokines B.N. Fields, D.M. Knipe, P.M. Howley, Fields Virology 1996 Lippincott-Raven Publishers Philadelphia 375 399
30. Z. Zhou, O.J. Hamming, N. Ank, S.R. Paludan, A.L. Nielsen, and R. Hartman Type III interferon (IFN) induces type I IFN-like response in the restricted suset of cell through signaling pathways involving both the jak- STAT pathway and nitrogen activated protein kinase J. Virol. 81 2007 7749 7758
31. J. Zou, S. Bird, J. Truckle, N. Bols, M. Horne, and C. Secombes Identification and expression analysis of an IL-18 homologue and its alternatively spliced form in rainbow trout (Oncorhynchus mykiss) Eur. J. Biochem. 271 10 2004 1913 1923
32. J. Zou, A. Carrington, B. Collet, J.M. Dijkstra, Y. Yoshiura, N. Bols, and C. Secombes Identification and bioactivities of IFN-gamma in rainbow trout Onchorhynchus mykiss: the first Th1- type cytokine characterized functionally in fish J. Immunol. 175 2005 2484 2494