Transcription profiling of malaria-naïve and semi-immune Colombian volunteers in a Plasmodium vivax sporozoite challenge

PLoS Neglected Tropical Diseases

Volumn 9, Issue 8, 2015, Pages

  Rojas Peña, Monica L ^a   Vallejo, Andres ^b   Herrera, Sócrates ^b   Gibson, Greg ^a   Arévalo Herrera, Myriam ^b,c  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b Caucaseco Scientific Research Center   (Colombia)

^c UNIVERSIDAD DEL VALLE   (Colombia)

Author keywords

[No Author keywords available]

Indexed keywords

CD31 ANTIGEN; INTERFERON; MITOGEN ACTIVATED PROTEIN KINASE 13; TRANSCRIPTION FACTOR MAFB; TRANSCRIPTOME; TRANSFORMING GROWTH FACTOR; TUMOR NECROSIS FACTOR;

ADAPTIVE IMMUNITY; ARTICLE; CLINICAL ARTICLE; CLINICAL TRIAL; COLOMBIAN; CONTROLLED STUDY; ERYTHROPOIESIS; FEMALE; GENE EXPRESSION PROFILING; HOST PARASITE INTERACTION; HUMAN; IMMUNE RESPONSE; MALE; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARASITEMIA; PLASMODIUM VIVAX MALARIA; QUALITY CONTROL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; SPOROZOITE; T LYMPHOCYTE; BENIN; COLOMBIA; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; IMMUNOLOGY; MALARIA, VIVAX; METABOLISM; PHYSIOLOGY; PLASMODIUM VIVAX;

ADAPTIVE IMMUNITY; BENIN; COLOMBIA; GENE EXPRESSION REGULATION; HUMANS; MALARIA, VIVAX; PARASITEMIA; PLASMODIUM VIVAX; TRANSCRIPTION, GENETIC; TRANSCRIPTOME;

EID: 84940666050     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0003978     Document Type: Article

References (30)

1. Wright GJ, Rayner JC. Plasmodium falciparum erythrocyte invasion: combining function with immune evasion. PLoS Pathog. 2014; 10:e1003943. doi: 10.1371/journal.ppat.1003943 PMID: 24651270
2. Zheng H, Tan Z, Xu W. Immune evasion strategies of pre-erythrocytic malaria parasites. mediators of inflammation. Mediators Inflamm. 2014; 362605.
3. Krzych U, Zarling S, Pichugin A. Memory T cells maintain protracted protection against malaria. Immunol Lett. 2014; 161:189-195. doi: 10.1016/j.imlet.2014.03.011 PMID: 24709142
4. Stanisic DI, Javati S, Kiniboro B, Lin E, Jiang J, Singh B, et al. Naturally acquired immune responses to P. vivax merozoite surface protein 3α and merozoite surface protein 9 are associated with reduced risk of P. vivax malaria in young Papua New Guinean children. PLoS Negl Trop Dis. 2013; 7:e2498. doi: 10. 1371/journal.pntd.0002498 PMID: 24244763
5. Gazzinelli RT, Kalantari P, Fitzgerald KA, Golenbock DT. Innate sensing of malaria parasites. Nat Rev Immunol. 2014; 14:744-757. doi: 10.1038/nri3742 PMID: 25324127
6. Tsang JS, Schwartzberg PL, Kotliarov Y, Biancotto A, Xie Z, Germain RN, et al. Global analyses of human immune variation reveal baseline predictors of postvaccination responses. Cell. 2014; 157:499-513. doi: 10.1016/j.cell.2014.03.031 PMID: 24725414
7. Yilmaz B, Portugal S, Tran TM, Gozzelino R, Ramos S, Gomes J, et al. Gut microbiota elicits a protective immune response against malaria transmission. Cell. 2014; 6:1277-1289.
8. Pulendran B. Systems vaccinology: probing humanity's diverse immune systems with vaccines. Proc Natl Acad Sci USA. 2014; 111:12300-12306. doi: 10.1073/pnas.1400476111 PMID: 25136102
9. Idaghdour Y, Quinlan J, Goulet JP, Berghout J, Gbeha E, Bruat V, et al. Evidence for additive and interaction effects of host genotype and infection in malaria. Proc Natl Acad Sci. 2012; 109:16786-16793. doi: 10.1073/pnas.1204945109 PMID: 22949651
10. Bunn AR, Escombe M, Armstrong, Whitty CJ, Doherty JF. Falciparum malaria in malaria-naive travellers and African visitors. Q J Med. 2004; 97:645-649.
11. Doolan DL, Dobano C, Baird JK. Acquired immunity to malaria. Clin. Microbiol. Rev. 2009; 22:13-36. doi: 10.1128/CMR.00025-08 PMID: 19136431
12. Arévalo-Herrera M, Forero-Peña DA, Rubiano K, Gómez-Hincapie J, Martínez NL, Lopez-Perez M, et al. Plasmodium vivax sporozoite challenge in malaria-naïve and semi-immune colombian volunteers. PLoS One. 2014; 9:e99754. doi: 10.1371/journal.pone.0099754 PMID: 24963662
13. Spurgeon SL, Jones RC, Ramakrishnan R. High throughput gene expression measurement with real time PCR in a microfluidic dynamic array. PLoS One. 2008; 3:e1662. doi: 10.1371/journal.pone. 0001662 PMID: 18301740
14. Cloonan N, Grimmond SM. Transcriptome content and dynamics at single-nucleotide resolution. Genome Biol. 2008; 9:234. doi: 10.1186/gb-2008-9-9-234 PMID: 18828881
15. Preininger M, Arafat D, Kim J, Nath AP, Idaghdour Y, Brigham KL, et al. Blood-informative transcripts define nine common axes of peripheral blood gene expression. PLoS Genet. 2013; 9:e1003362. doi: 10.1371/journal.pgen.1003362 PMID: 23516379
16. Trapnell C, Roberts A, Goff L,Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012; 7:562-578. doi: 10.1038/nprot.2012.016 PMID: 22383036
17. Mecham BH, Nelson PS, Storey JD. Supervised normalization of micro-arrays. Bioinformatics. 2010; 26:1308-1315. doi: 10.1093/bioinformatics/btq118 PMID: 20363728
18. Chaussabel D, Quinn C, Shen J, Patel P, Glaser C, Baldwin N, et al. A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus. Immunity. 2008; 29:150-164. doi: 10.1016/j.immuni.2008.05.012 PMID: 18631455
19. Suzuki R, Shimodaira H. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 2006; 22:1540-1542. PMID: 16595560
20. Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, Relman DA, Brown PO. Individuality and variation in gene expression patterns in human blood. Proc Natl Acad Sci (USA). 2003; 100:1896-1901.
21. GonÇalves RM, Scopel KKG, Bastos MS, Ferreira MU. Cytokine balance in human malaria: does Plasmodium vivax elicit more inflammatory responses than Plasmodium falciparum? PLoS One. 2012; 7: e44394. doi: 10.1371/journal.pone.0044394 PMID: 22973442
22. McKenzie FE, Prudhomme WA, Magill AJ, Forney JR, Permpanich B, Lucas C, et al. White blood cell counts and malaria. J Infect Dis. 2005; 192:323-330. PMID: 15962228
23. Kotepui M, Phunphuech B, Phiwklam N, Chupeerach C, Duangmano S. Effect of malarial infection on haematological parameters in population near Thailand-Myanmar border. Malar J. 2014; 13:218. doi: 10.1186/1475-2875-13-218 PMID: 24898891
24. McCall MB, Sauerwein RW. Interferon-gamma-central mediator of protective immune responses against the pre-erythrocytic and blood stage of malaria. J Leukoc Biol. 2010; 88:1131-1143. doi: 10. 1189/jlb.0310137 PMID: 20610802
25. Jagannathan P, Nankya F, Stoyanov C, Eccles-James I, Sikyomu E, Naluwu K, et al. IFNγ responses to pre-erythrocytic and blood-stage malaria antigens exhibit differential associations with past exposure and subsequent protection. J Infect Dis. 2015; 211:1987-1996. doi: 10.1093/infdis/jiu814 PMID: 25520427
26. Laishram DD, Sutton PL, Nanda N, Sharma VL, Sobti RC, Carlton JM, et al. The complexities of malaria disease manifestations with a focus on asymptomatic malaria. Malar J. 2012; 11:29. doi: 10.1186/ 1475-2875-11-29 PMID: 22289302
27. Portugal S, Moebius J, Skinner J, Doumbo S, Doumtabe D, Kone Y, et al. Exposure-dependent control of malaria-induced inflammation in children. PLoS Pathog. 2014; 10:e1004079. doi: 10.1371/journal. ppat.1004079 PMID: 24743880
28. Idaghdour Y, Storey JD, Jadallah S, Gibson G. A gene expression signature of environmental geography in peripheral blood of Moroccan Amazigh. PLoS Genet. 2008; 4:e1000052.
29. Nakaya HI, Wrammert J, Lee EK, Racioppi L, Marie-Kunze S, Haining WN, et al. Systems biology of seasonal influenza vaccination in humans. Nat Immunol. 2011; 12:786-787. doi: 10.1038/ni.2067 PMID: 21743478
30. Ayers JS, Schnieder DS. Tolerance of infections. Annu Rev Immunol. 2012; 30:271-294. doi: 10.1146/ annurev-immunol-020711-075030 PMID: 22224770