-
1
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., McCoy A.J., Moriarty N.W., Oeffner R., Read R.J., Richardson D.C., Richardson J.S., Terwilliger T.C., Zwart P.H. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:213-221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
2
-
-
0039848317
-
Substitution of Asp-309 by Asn in the Arg-Asp-Pro (RDP) motif of Acetobacter diazotrophicus levansucrase affects sucrose hydrolysis, but not enzyme specificity
-
Batista F.R., Hernandez L., Fernandez J.R., Arrieta J., Menendez C., Gomez R., Tambara Y., Pons T. Substitution of Asp-309 by Asn in the Arg-Asp-Pro (RDP) motif of Acetobacter diazotrophicus levansucrase affects sucrose hydrolysis, but not enzyme specificity. Biochem. J. 1999, 337:503-506.
-
(1999)
Biochem. J.
, vol.337
, pp. 503-506
-
-
Batista, F.R.1
Hernandez, L.2
Fernandez, J.R.3
Arrieta, J.4
Menendez, C.5
Gomez, R.6
Tambara, Y.7
Pons, T.8
-
3
-
-
58149200943
-
The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics
-
Cantarel B.L., Coutinho P.M., Rancurel C., Bernard T., Lombard V., Henrissat B. The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 2009, 37:D233-D238.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D233-D238
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
4
-
-
84882336305
-
Cloning, expression, purification, crystallization and preliminary X-ray analysis of EaLsc, a levansucrase from Erwinia amylovora
-
Caputi L., Cianci M., Benini S. Cloning, expression, purification, crystallization and preliminary X-ray analysis of EaLsc, a levansucrase from Erwinia amylovora. Acta Crystallogr. Sect. F: Struct. Biol. Cryst. Commun. 2013, 69:570-573.
-
(2013)
Acta Crystallogr. Sect. F: Struct. Biol. Cryst. Commun.
, vol.69
, pp. 570-573
-
-
Caputi, L.1
Cianci, M.2
Benini, S.3
-
5
-
-
84890753466
-
Biomolecular characterization of the levansucrase of Erwinia amylovora, a promising biocatalyst for the synthesis of fructooligosaccharides
-
Caputi L., Nepogodiev S.A., Malnoy M., Rejzek M., Field R.A., Benini S. Biomolecular characterization of the levansucrase of Erwinia amylovora, a promising biocatalyst for the synthesis of fructooligosaccharides. J. Agric. Food Chem. 2013, 61:12265-12273.
-
(2013)
J. Agric. Food Chem.
, vol.61
, pp. 12265-12273
-
-
Caputi, L.1
Nepogodiev, S.A.2
Malnoy, M.3
Rejzek, M.4
Field, R.A.5
Benini, S.6
-
6
-
-
0025861055
-
Polymerase and hydrolase activities of Bacillus subtilis levansucrase can be separately modulated by site-directed mutagenesis
-
Chambert R., Petit-Glatron M.F. Polymerase and hydrolase activities of Bacillus subtilis levansucrase can be separately modulated by site-directed mutagenesis. Biochem. J. 1991, 279:35-41.
-
(1991)
Biochem. J.
, vol.279
, pp. 35-41
-
-
Chambert, R.1
Petit-Glatron, M.F.2
-
7
-
-
0015958922
-
Kinetic studies of levansucrase of Bacillus subtilis
-
Chambert R., Treboul G., Dedonder R. Kinetic studies of levansucrase of Bacillus subtilis. Eur. J. Biochem. 1974, 41:285-300.
-
(1974)
Eur. J. Biochem.
, vol.41
, pp. 285-300
-
-
Chambert, R.1
Treboul, G.2
Dedonder, R.3
-
8
-
-
74549178560
-
MolProbity: all-atom structure validation for macromolecular crystallography
-
Chen V.B., Arendall W.B., Headd J.J., Keedy D.A., Immormino R.M., Kapral G.J., Murray L.W., Richardson J.S., Richardson D.C. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:12-21.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
9
-
-
77954925220
-
Crystal structures of Aspergillus japonicus fructosyltransferase complex with donor/acceptor substrates reveal complete subsites in the active site for catalysis
-
Chuankhayan P., Hsieh C.Y., Huang Y.C., Hsieh Y.Y., Guan H.H., Hsieh Y.C., Tien Y.C., Chen C.D., Chiang C.M., Chen C.J. Crystal structures of Aspergillus japonicus fructosyltransferase complex with donor/acceptor substrates reveal complete subsites in the active site for catalysis. J. Biol. Chem. 2010, 285:23251-23264.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 23251-23264
-
-
Chuankhayan, P.1
Hsieh, C.Y.2
Huang, Y.C.3
Hsieh, Y.Y.4
Guan, H.H.5
Hsieh, Y.C.6
Tien, Y.C.7
Chen, C.D.8
Chiang, C.M.9
Chen, C.J.10
-
10
-
-
29244442950
-
Simplified screening for the detection of soluble fusion constructs expressed in E. coli using a modular set of vectors
-
Dümmler A., Lawrence A.M., de Marco A. Simplified screening for the detection of soluble fusion constructs expressed in E. coli using a modular set of vectors. Microb. Cell Fact. 2005, 4:34.
-
(2005)
Microb. Cell Fact.
, vol.4
, pp. 34
-
-
Dümmler, A.1
Lawrence, A.M.2
de Marco, A.3
-
11
-
-
77949535720
-
Features and development of Coot
-
Emsley P., Lohkamp B., Scott W.G., Cowtan K. Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:486-501.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
13
-
-
10244243980
-
Characterization and influence on virulence of the levansucrase gene from the fireblight pathogen Erwinia amylovora
-
Geier G., Geider K. Characterization and influence on virulence of the levansucrase gene from the fireblight pathogen Erwinia amylovora. Physiol. Mol. Plant Pathol. 1993, 42:387-404.
-
(1993)
Physiol. Mol. Plant Pathol.
, vol.42
, pp. 387-404
-
-
Geier, G.1
Geider, K.2
-
14
-
-
35048826148
-
Insights into polymer versus oligosaccharide synthesis: mutagenesis and mechanistic studies of a novel levansucrase from Bacillus megaterium
-
Homann A., Biedendieck R., Goetze S., Jahn D., Seibel J. Insights into polymer versus oligosaccharide synthesis: mutagenesis and mechanistic studies of a novel levansucrase from Bacillus megaterium. Biochem. J. 2007, 407:189-198.
-
(2007)
Biochem. J.
, vol.407
, pp. 189-198
-
-
Homann, A.1
Biedendieck, R.2
Goetze, S.3
Jahn, D.4
Seibel, J.5
-
16
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E., Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 2004, 60:2256-2268.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
17
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E., Henrick K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 2007, 372:774-797.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
18
-
-
62349102392
-
Structural insights into glycoside hydrolase family 32 and 68 enzymes: functional implications
-
Lammens W., Le Roy K., Schroeven L., Van Laere A., Rabijns A., Van den Ende W. Structural insights into glycoside hydrolase family 32 and 68 enzymes: functional implications. J. Exp. Bot. 2009, 60:727-740.
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 727-740
-
-
Lammens, W.1
Le Roy, K.2
Schroeven, L.3
Van Laere, A.4
Rabijns, A.5
Van den Ende, W.6
-
19
-
-
35848947357
-
Unraveling the difference between invertases and fructan exohydrolases: a single amino acid (Asp-239) substitution transforms Arabidopsis cell wall invertase1 into a fructan 1-exohydrolase
-
Le Roy K., Lammens W., Verhaest M., De Coninck B., Rabijns A., Van Laere A., Van den Ende W. Unraveling the difference between invertases and fructan exohydrolases: a single amino acid (Asp-239) substitution transforms Arabidopsis cell wall invertase1 into a fructan 1-exohydrolase. Plant Physiol. 2007, 145:616-625.
-
(2007)
Plant Physiol.
, vol.145
, pp. 616-625
-
-
Le Roy, K.1
Lammens, W.2
Verhaest, M.3
De Coninck, B.4
Rabijns, A.5
Van Laere, A.6
Van den Ende, W.7
-
20
-
-
37349023302
-
BALBES: a molecular-replacement pipeline
-
Long F., Vagin A.A., Young P., Murshudov G.N. BALBES: a molecular-replacement pipeline. Acta Crystallogr. D Biol. Crystallogr. 2008, 64:125-132.
-
(2008)
Acta Crystallogr. D Biol. Crystallogr.
, vol.64
, pp. 125-132
-
-
Long, F.1
Vagin, A.A.2
Young, P.3
Murshudov, G.N.4
-
21
-
-
23944490660
-
Crystal structure of levansucrase from the Gram-negative bacterium Gluconacetobacter diazotrophicus
-
Martinez-Fleites C., Ortiz-Lombardia M., Pons T., Tarbouriech N., Taylor E.J., Arrieta J.G., Hernandez L., Davies G.J. Crystal structure of levansucrase from the Gram-negative bacterium Gluconacetobacter diazotrophicus. Biochem. J. 2005, 390:19-27.
-
(2005)
Biochem. J.
, vol.390
, pp. 19-27
-
-
Martinez-Fleites, C.1
Ortiz-Lombardia, M.2
Pons, T.3
Tarbouriech, N.4
Taylor, E.J.5
Arrieta, J.G.6
Hernandez, L.7
Davies, G.J.8
-
22
-
-
0242490546
-
Structural framework of fructosyl transfer in Bacillus subtilis levansucrase
-
Meng G., Fütterer K. Structural framework of fructosyl transfer in Bacillus subtilis levansucrase. Nat. Struct. Biol. 2003, 10:935-941.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 935-941
-
-
Meng, G.1
Fütterer, K.2
-
23
-
-
52449086930
-
Selected mutations in Bacillus subtilis levansucrase semi-conserved regions affecting its biochemical properties
-
Ortiz-Soto M.E., Rivera M., Rudiño-Piñera E., Olvera C., López-Munguía A. Selected mutations in Bacillus subtilis levansucrase semi-conserved regions affecting its biochemical properties. Protein Eng. Des. Sel. 2008, 21:589-595.
-
(2008)
Protein Eng. Des. Sel.
, vol.21
, pp. 589-595
-
-
Ortiz-Soto, M.E.1
Rivera, M.2
Rudiño-Piñera, E.3
Olvera, C.4
López-Munguía, A.5
-
24
-
-
33645546180
-
The levansucrase and inulosucrase enzymes of Lactobacillus reuteri 121 catalyse processive and non-processive transglycosylation reactions
-
Ozimek L.K., Kralj S., van der Maarel M.J., Dijkhuizen L. The levansucrase and inulosucrase enzymes of Lactobacillus reuteri 121 catalyse processive and non-processive transglycosylation reactions. Microbiology 2006, 152:1187-1196.
-
(2006)
Microbiology
, vol.152
, pp. 1187-1196
-
-
Ozimek, L.K.1
Kralj, S.2
van der Maarel, M.J.3
Dijkhuizen, L.4
-
25
-
-
84860389478
-
Crystal structure of inulosucrase from Lactobacillus: insights into the substrate specificity and product specificity of GH68 fructansucrases
-
Pijning T., Anwar M.A., Boger M., Dobruchowska J.M., Leemhuis H., Kralj S., Dijkhuizen L., Dijkstra B.W. Crystal structure of inulosucrase from Lactobacillus: insights into the substrate specificity and product specificity of GH68 fructansucrases. J. Mol. Biol. 2011, 412:80-93.
-
(2011)
J. Mol. Biol.
, vol.412
, pp. 80-93
-
-
Pijning, T.1
Anwar, M.A.2
Boger, M.3
Dobruchowska, J.M.4
Leemhuis, H.5
Kralj, S.6
Dijkhuizen, L.7
Dijkstra, B.W.8
-
26
-
-
1042291218
-
Three acidic residues are at the active site of a beta-propeller architecture in glycoside hydrolase families 32, 43, 62, and 68
-
Pons T., Naumoff D.G., Martínez-Fleites C., Hernández L. Three acidic residues are at the active site of a beta-propeller architecture in glycoside hydrolase families 32, 43, 62, and 68. Proteins 2004, 54:424-432.
-
(2004)
Proteins
, vol.54
, pp. 424-432
-
-
Pons, T.1
Naumoff, D.G.2
Martínez-Fleites, C.3
Hernández, L.4
-
27
-
-
79955961857
-
Polysaccharide synthesis of the levansucrase SacB from Bacillus megaterium is controlled by distinct surface motifs
-
Strube C.P., Homann A., Gamer M., Jahn D., Seibel J., Heinz D.W. Polysaccharide synthesis of the levansucrase SacB from Bacillus megaterium is controlled by distinct surface motifs. J. Biol. Chem. 2011, 286:17593-17600.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 17593-17600
-
-
Strube, C.P.1
Homann, A.2
Gamer, M.3
Jahn, D.4
Seibel, J.5
Heinz, D.W.6
-
28
-
-
37349103121
-
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
-
Terwilliger T.C., Grosse-Kunstleve R.W., Afonine P.V., Moriarty N.W., Zwart P.H., Hung L.W., Read R.J., Adams P.D. Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard. Acta Crystallogr. D Biol. Crystallogr. 2008, 64:61-69.
-
(2008)
Acta Crystallogr. D Biol. Crystallogr.
, vol.64
, pp. 61-69
-
-
Terwilliger, T.C.1
Grosse-Kunstleve, R.W.2
Afonine, P.V.3
Moriarty, N.W.4
Zwart, P.H.5
Hung, L.W.6
Read, R.J.7
Adams, P.D.8
-
29
-
-
84867204725
-
Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 beta-fructofuranosidase
-
Tonozuka T., Tamaki A., Yokoi G., Miyazaki T., Ichikawa M., Nishikawa A., Ohta Y., Hidaka Y., Katayama K., Hatada Y., Ito T., Fujita K. Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 beta-fructofuranosidase. Enzyme Microb. Technol. 2012, 51:359-365.
-
(2012)
Enzyme Microb. Technol.
, vol.51
, pp. 359-365
-
-
Tonozuka, T.1
Tamaki, A.2
Yokoi, G.3
Miyazaki, T.4
Ichikawa, M.5
Nishikawa, A.6
Ohta, Y.7
Hidaka, Y.8
Katayama, K.9
Hatada, Y.10
Ito, T.11
Fujita, K.12
-
30
-
-
0013461295
-
Macromolecular TLS refinement in REFMAC at moderate resolutions
-
Winn M.D., Murshudov G.N., Papiz M.Z. Macromolecular TLS refinement in REFMAC at moderate resolutions. Methods Enzymol. 2003, 374:300-321.
-
(2003)
Methods Enzymol.
, vol.374
, pp. 300-321
-
-
Winn, M.D.1
Murshudov, G.N.2
Papiz, M.Z.3
-
31
-
-
0036775911
-
Identification of functionally important amino acid residues in Zymomonas mobilis levansucrase
-
Yanase H., Maeda M., Hagiwara E., Yagi H., Taniguchi K., Okamoto K. Identification of functionally important amino acid residues in Zymomonas mobilis levansucrase. J. Biochem. 2002, 132:565-672.
-
(2002)
J. Biochem.
, vol.132
, pp. 565-672
-
-
Yanase, H.1
Maeda, M.2
Hagiwara, E.3
Yagi, H.4
Taniguchi, K.5
Okamoto, K.6
-
32
-
-
28044461470
-
Identification of Erwinia amylovora genes induced during infection of immature pear tissue
-
Zhao Y., Blumer S.E., Sundin G.W. Identification of Erwinia amylovora genes induced during infection of immature pear tissue. J. Bacteriol. 2005, 187:8088-8103.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 8088-8103
-
-
Zhao, Y.1
Blumer, S.E.2
Sundin, G.W.3
|