-
1
-
-
0025941171
-
From genes to phenotype: dynamical systems and evolvability
-
Alberch P (1991) From genes to phenotype: dynamical systems and evolvability. Genetica 84:5–11 DOI: 10.1007/BF00123979
-
(1991)
Genetica
, vol.84
, pp. 5-11
-
-
Alberch, P.1
-
3
-
-
0001690283
-
Two concepts of constraint: adaptationism and the challenge from developmental biology
-
Amundson R (1994) Two concepts of constraint: adaptationism and the challenge from developmental biology. Philos Sci 61:556–578 DOI: 10.1086/289822
-
(1994)
Philos Sci
, vol.61
, pp. 556-578
-
-
Amundson, R.1
-
4
-
-
0000861070
-
Adaptation and development: on the lack of common ground
-
Orzack SH, Sober E, (eds), Cambridge University Press, Cambridge
-
Amundson R (2001) Adaptation and development: on the lack of common ground. In: Orzack SH, Sober E (eds) Adaptationism and optimality. Cambridge University Press, Cambridge, pp 303–334 DOI: 10.1017/CBO9780511609084.011
-
(2001)
Adaptationism and optimality
, pp. 303-334
-
-
Amundson, R.1
-
5
-
-
58849106769
-
Systems biology: parameter estimation for biochemical models
-
Ashyraliyev M, Fomekong-Nanfack Y, Kaandorp JA et al (2009) Systems biology: parameter estimation for biochemical models. FEBS J 276:886–902 DOI: 10.1111/j.1742-4658.2008.06844.x
-
(2009)
FEBS J
, vol.276
, pp. 886-902
-
-
Ashyraliyev, M.1
Fomekong-Nanfack, Y.2
Kaandorp, J.A.3
-
6
-
-
46349105936
-
Optimization in computational systems biology
-
Banga JR (2008) Optimization in computational systems biology. BMC Syst Biol 2:47 DOI: 10.1186/1752-0509-2-47
-
(2008)
BMC Syst Biol
, vol.2
, pp. 47
-
-
Banga, J.R.1
-
7
-
-
0004198890
-
-
In: Wolters G, Bechtel W, Richardson RC (1993) Discovering complexity: decomposition and localization as strategies in scientific research. Princeton University Press, Princeton
-
Beatty J (1995) The evolutionary contingency thesis. In: Wolters G, Bechtel W, Richardson RC (1993) Discovering complexity: decomposition and localization as strategies in scientific research. Princeton University Press, Princeton
-
(1995)
The evolutionary contingency thesis.
-
-
Beatty, J.1
-
10
-
-
0006665099
-
Form and order in evolutionary biology: Stuart Kauffman’s transformation of theoretical biology
-
Burian RM, Richardson RC (1990) Form and order in evolutionary biology: Stuart Kauffman’s transformation of theoretical biology. PSA 2:267–287
-
(1990)
PSA
, vol.2
, pp. 267-287
-
-
Burian, R.M.1
Richardson, R.C.2
-
11
-
-
77952674430
-
What systems biology is (not, yet)
-
Cain CJ, Conte DA, García-Ojeda ME et al (2008) What systems biology is (not, yet). Science 320:1013–1014 DOI: 10.1126/science.1157405
-
(2008)
Science
, vol.320
, pp. 1013-1014
-
-
Cain, C.J.1
Conte, D.A.2
García-Ojeda, M.E.3
-
12
-
-
0034052521
-
Towards a new evolutionary synthesis
-
Carroll RL (2000) Towards a new evolutionary synthesis. Trends Ecol Evol 15:27–32 DOI: 10.1016/S0169-5347(99)01743-7
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 27-32
-
-
Carroll, R.L.1
-
13
-
-
47249097673
-
Modeling in EvoDevo: How to integrate development, evolution, and ecology
-
Laubichler MD, Müller GB, MIT Press, Cambridge
-
Collins JP, Gilbert S, Laubichler MD, Müller GB (2007) Modeling in EvoDevo: how to integrate development, evolution, and ecology. In: Laubichler MD, Müller GB (eds) Modeling biology: structures, behaviors, evolution. MIT Press, Cambridge, pp 355–378
-
(2007)
Modeling Biology: Structures, Behaviors, Evolution
, pp. 355-378
-
-
Collins, J.P.1
Gilbert, S.2
Laubichler, M.D.3
Müller, G.B.4
-
15
-
-
0036500834
-
Reverse engineering biological complexity
-
Csete M, Doyle J (2002) Reverse engineering biological complexity. Science 295:1664–1669 DOI: 10.1126/science.1069981
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.1
Doyle, J.2
-
17
-
-
0004149207
-
-
Oxford University Press, Oxford
-
Dawkins R (1976) The selfish gene. Oxford University Press, Oxford
-
(1976)
The selfish gene
-
-
Dawkins, R.1
-
21
-
-
65349097905
-
Stem cell states, fates, and the rules of attraction
-
Enver T, Pera M, Peterson C, Andrews PW (2009) Stem cell states, fates, and the rules of attraction. Cell Stem Cell 4:387–397 DOI: 10.1016/j.stem.2009.04.011
-
(2009)
Cell Stem Cell
, vol.4
, pp. 387-397
-
-
Enver, T.1
Pera, M.2
Peterson, C.3
Andrews, P.W.4
-
22
-
-
78650889884
-
Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits
-
Espinosa-Soto C, Martin OC, Wagner A (2011) Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits. BMC Evol Biol 11:5 DOI: 10.1186/1471-2148-11-5
-
(2011)
BMC Evol Biol
, vol.11
, pp. 5
-
-
Espinosa-Soto, C.1
Martin, O.C.2
Wagner, A.3
-
23
-
-
84856719617
-
Waddington redux: models and explanation in stem cell and systems biology
-
Fagan MB (2012) Waddington redux: models and explanation in stem cell and systems biology. Biol Philos 27:179–213 DOI: 10.1007/s10539-011-9294-y
-
(2012)
Biol Philos
, vol.27
, pp. 179-213
-
-
Fagan, M.B.1
-
24
-
-
84872662588
-
Evolution in developmental phenotype space
-
Felix M-A (2012) Evolution in developmental phenotype space. Curr Opin Genet Dev 22:593–599 DOI: 10.1016/j.gde.2012.08.003
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 593-599
-
-
Felix, M.-A.1
-
25
-
-
84866793913
-
Evolution in silico: from network structure to bifurcation theory
-
Soyer S, (ed), Springer, New York
-
François P (2012) Evolution in silico: from network structure to bifurcation theory. In: Soyer S (ed) Evolutionary systems biology. Springer, New York, pp 157–182 DOI: 10.1007/978-1-4614-3567-9_8
-
(2012)
Evolutionary systems biology
, pp. 157-182
-
-
François, P.1
-
26
-
-
84867303343
-
A dynamical-systems view of stem cell biology
-
Furusawa C, Kaneko K (2012) A dynamical-systems view of stem cell biology. Science 338:215–217 DOI: 10.1126/science.1224311
-
(2012)
Science
, vol.338
, pp. 215-217
-
-
Furusawa, C.1
Kaneko, K.2
-
27
-
-
0002883610
-
Mechanisms and the nature of causation
-
Glennan S (1996) Mechanisms and the nature of causation. Erkenntnis 44:49–71 DOI: 10.1007/BF00172853
-
(1996)
Erkenntnis
, vol.44
, pp. 49-71
-
-
Glennan, S.1
-
28
-
-
0019998213
-
Development and evolution
-
Goodwin B (1982) Development and evolution. J Theor Biol 97:43–55 DOI: 10.1016/0022-5193(82)90275-2
-
(1982)
J Theor Biol
, vol.97
, pp. 43-55
-
-
Goodwin, B.1
-
30
-
-
85131842237
-
-
Ruse M, Travis J, Evolution: the first four billion years, Harvard University Press, Cambridge, MA
-
Goodwin B (2009) Beyond the Darwinian paradigm: understanding biological forms. In: Ruse M, Travis J (eds) Evolution: the first four billion years. Harvard University Press, Cambridge, MA, pp 299–312
-
(2009)
Beyond the Darwinian paradigm: Understanding biological forms
, pp. 299-312
-
-
Goodwin, B.1
-
31
-
-
0027328670
-
Is morphogenesis an intrinsically robust process?
-
Goodwin B, Kauffman S, Murray JD (1993) Is morphogenesis an intrinsically robust process? J Theor Biol 163:135–144 DOI: 10.1006/jtbi.1993.1112
-
(1993)
J Theor Biol
, vol.163
, pp. 135-144
-
-
Goodwin, B.1
Kauffman, S.2
Murray, J.D.3
-
33
-
-
0000638947
-
The historical turn in the study of adaptation
-
Griffiths PE (1996) The historical turn in the study of adaptation. Brit J Phil Sci 47:511–532 DOI: 10.1093/bjps/47.4.511
-
(1996)
Brit J Phil Sci
, vol.47
, pp. 511-532
-
-
Griffiths, P.E.1
-
34
-
-
33845672511
-
Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions
-
Haag ES (2007) Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions. Genetica 129:45–55 DOI: 10.1007/s10709-006-0032-3
-
(2007)
Genetica
, vol.129
, pp. 45-55
-
-
Haag, E.S.1
-
35
-
-
0000296665
-
Studies in the logic of explanation
-
Hempel CG, Oppenheim P (1948) Studies in the logic of explanation. Philos Sci 15:135–175 DOI: 10.1086/286983
-
(1948)
Philos Sci
, vol.15
, pp. 135-175
-
-
Hempel, C.G.1
Oppenheim, P.2
-
36
-
-
64249157351
-
Epigenetic reprogramming and induced pluripotency
-
Hochedlinger K, Plath K (2009) Epigenetic reprogramming and induced pluripotency. Development 136:509–523 DOI: 10.1242/dev.020867
-
(2009)
Development
, vol.136
, pp. 509-523
-
-
Hochedlinger, K.1
Plath, K.2
-
37
-
-
84866781181
-
Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability
-
Soyer O, (ed), Springer, London
-
Hogeweg P (2012) Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability. In: Soyer O (ed) Evolutionary systems biology. Springer, London, pp 195–223 DOI: 10.1007/978-1-4614-3567-9_10
-
(2012)
Evolutionary systems biology
, pp. 195-223
-
-
Hogeweg, P.1
-
38
-
-
70450162700
-
Non-genetic heterogeneity of cells in development: more than just noise
-
Huang S (2009a) Non-genetic heterogeneity of cells in development: more than just noise. Development 136:3853–3862 DOI: 10.1242/dev.035139
-
(2009)
Development
, vol.136
, pp. 3853-3862
-
-
Huang, S.1
-
39
-
-
66449090934
-
Reprogramming cell fates: reconciling rarity with robustness
-
Huang S (2009b) Reprogramming cell fates: reconciling rarity with robustness. BioEssays 31:546–560 DOI: 10.1002/bies.200800189
-
(2009)
BioEssays
, vol.31
, pp. 546-560
-
-
Huang, S.1
-
40
-
-
79960074631
-
Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways
-
Huang S (2011a) Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways. Phil Trans R Soc B 366:2247–2259 DOI: 10.1098/rstb.2011.0008
-
(2011)
Phil Trans R Soc B
, vol.366
, pp. 2247-2259
-
-
Huang, S.1
-
41
-
-
84855800166
-
The molecular and mathematical basis of Waddington’s epigenetic landscape: a framework for post-Darwinian biology?
-
Huang S (2011b) The molecular and mathematical basis of Waddington’s epigenetic landscape: a framework for post-Darwinian biology? BioEssays 34:149–157 DOI: 10.1002/bies.201100031
-
(2011)
BioEssays
, vol.34
, pp. 149-157
-
-
Huang, S.1
-
42
-
-
70349330663
-
Cancer attractors: a systems view of tumors from a gene network dynamics and developmental perspective
-
Huang S, Ernberg I, Kauffman S (2009) Cancer attractors: a systems view of tumors from a gene network dynamics and developmental perspective. Semin Cell Dev Biol 20:869–876 DOI: 10.1016/j.semcdb.2009.07.003
-
(2009)
Semin Cell Dev Biol
, vol.20
, pp. 869-876
-
-
Huang, S.1
Ernberg, I.2
Kauffman, S.3
-
43
-
-
78651369529
-
The gap gene network
-
Jaeger J (2011) The gap gene network. Cell Mol Life Sci 68:243–274 DOI: 10.1007/s00018-010-0536-y
-
(2011)
Cell Mol Life Sci
, vol.68
, pp. 243-274
-
-
Jaeger, J.1
-
44
-
-
84866790417
-
Life’s attractors: understanding developmental systems through reverse engineering and in silico evolution
-
Soyer O, (ed), Springer, London
-
Jaeger J, Crombach A (2012) Life’s attractors: understanding developmental systems through reverse engineering and in silico evolution. In: Soyer O (ed) Evolutionary systems biology. Springer, London, pp 93–119 DOI: 10.1007/978-1-4614-3567-9_5
-
(2012)
Evolutionary systems biology
, pp. 93-119
-
-
Jaeger, J.1
Crombach, A.2
-
45
-
-
78951494457
-
Reverse engineering of gene regulatory networks
-
Lawrence ND, Girolami M, Rattray M et al, MIT Press, Cambridge, MA
-
Jaeger J, Monk N (2010) Reverse engineering of gene regulatory networks. In: Lawrence ND, Girolami M, Rattray M et al (eds) Learning and inference in computational systems biology. MIT Press, Cambridge, MA, pp 9–34
-
(2010)
Learning and Inference in Computational Systems Biology
, pp. 9-34
-
-
Jaeger, J.1
Monk, N.2
-
46
-
-
84942292700
-
Keeping the gene it its place
-
Lambert D, Chetland C, Millar C, (eds), Floris Books, Glasgow
-
Jaeger J, Monk N (2013) Keeping the gene it its place. In: Lambert D, Chetland C, Millar C (eds) The intuitive way of knowing: a tribute to Brian Goodwin. Floris Books, Glasgow, pp 153–189
-
(2013)
The intuitive way of knowing: a tribute to Brian Goodwin
, pp. 153-189
-
-
Jaeger, J.1
Monk, N.2
-
47
-
-
84901484116
-
Bioattractors: dynamical systems theory and the evolution of regulatory processes
-
Jaeger J, Monk N (2014) Bioattractors: dynamical systems theory and the evolution of regulatory processes. J Physiol 592:2267 DOI: 10.1113/jphysiol.2014.272385
-
(2014)
J Physiol
, vol.592
, pp. 2267
-
-
Jaeger, J.1
Monk, N.2
-
48
-
-
84901487980
-
On the concept of mechanism in development
-
Minelli A, Pradeu T, (eds), Oxford University Press, Oxford
-
Jaeger J, Sharpe J (2014) On the concept of mechanism in development. In: Minelli A, Pradeu T (eds) Towards a theory of development. Oxford University Press, Oxford, pp 56–78 DOI: 10.1093/acprof:oso/9780199671427.003.0004
-
(2014)
Towards a theory of development
, pp. 56-78
-
-
Jaeger, J.1
Sharpe, J.2
-
49
-
-
3142734333
-
Dynamic control of positional information in the early Drosophila embryo
-
Jaeger J, Surkova S, Blagov M et al (2004a) Dynamic control of positional information in the early Drosophila embryo. Nature 430:368–371 DOI: 10.1038/nature02678
-
(2004)
Nature
, vol.430
, pp. 368-371
-
-
Jaeger, J.1
Surkova, S.2
Blagov, M.3
-
50
-
-
4644363054
-
Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster
-
Jaeger J, Blagov M, Kosman D et al (2004b) Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster. Genetics 167:1721–1737 DOI: 10.1534/genetics.104.027334
-
(2004)
Genetics
, vol.167
, pp. 1721-1737
-
-
Jaeger, J.1
Blagov, M.2
Kosman, D.3
-
51
-
-
84870413737
-
The inheritance of process: a dynamical systems approach
-
Jaeger J, Irons D, Monk N (2012) The inheritance of process: a dynamical systems approach. J Exp Zool B 318:591–612 DOI: 10.1002/jez.b.22468
-
(2012)
J Exp Zool B
, vol.318
, pp. 591-612
-
-
Jaeger, J.1
Irons, D.2
Monk, N.3
-
52
-
-
79956132200
-
Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity, and robustness
-
Kaneko K (2011) Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity, and robustness. BioEssays 33:403–413 DOI: 10.1002/bies.201000153
-
(2011)
BioEssays
, vol.33
, pp. 403-413
-
-
Kaneko, K.1
-
53
-
-
80053089880
-
The explanatory force of dynamical and mathematical models in neuroscience: a mechanistic perspective
-
Kaplan DM, Craver CF (2011) The explanatory force of dynamical and mathematical models in neuroscience: a mechanistic perspective. Philos Sci 78:601–627 DOI: 10.1086/661755
-
(2011)
Philos Sci
, vol.78
, pp. 601-627
-
-
Kaplan, D.M.1
Craver, C.F.2
-
54
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
Kauffman S (1969) Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol 22:437–467 DOI: 10.1016/0022-5193(69)90015-0
-
(1969)
J Theor Biol
, vol.22
, pp. 437-467
-
-
Kauffman, S.1
-
59
-
-
70349533020
-
Making the right connections: biological networks in the light of evolution
-
Knight CG, Pinney JW (2009) Making the right connections: biological networks in the light of evolution. BioEssays 10:1080–1090 DOI: 10.1002/bies.200900043
-
(2009)
BioEssays
, vol.10
, pp. 1080-1090
-
-
Knight, C.G.1
Pinney, J.W.2
-
60
-
-
80052313163
-
Are there laws of genome evolution?
-
Koonin EV (2011) Are there laws of genome evolution? PLoS Comput Biol 7:e1002173 DOI: 10.1371/journal.pcbi.1002173
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Koonin, E.V.1
-
61
-
-
77953809541
-
Constraints and plasticity in genome and molecular-phenome evolution
-
Koonin EV, Wolf YI (2010) Constraints and plasticity in genome and molecular-phenome evolution. Nat Rev Genet 11:487–498 DOI: 10.1038/nrg2810
-
(2010)
Nat Rev Genet
, vol.11
, pp. 487-498
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
62
-
-
79953104068
-
The challenges and scope of theoretical biology
-
Krakauer D, Collins JP, Erwin D et al (2011) The challenges and scope of theoretical biology. J Theor Biol 276:269–276 DOI: 10.1016/j.jtbi.2011.01.051
-
(2011)
J Theor Biol
, vol.276
, pp. 269-276
-
-
Krakauer, D.1
Collins, J.P.2
Erwin, D.3
-
63
-
-
70450160004
-
Systems-level dynamic analyses of fate change in murine embryonic stem cells
-
Lu R, Markowetz F, Unwin RD et al (2009) Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462:358–362 DOI: 10.1038/nature08575
-
(2009)
Nature
, vol.462
, pp. 358-362
-
-
Lu, R.1
Markowetz, F.2
Unwin, R.D.3
-
64
-
-
34548724489
-
The evolution of genetic networks by non-adaptive processes
-
Lynch M (2007a) The evolution of genetic networks by non-adaptive processes. Nat Rev Genet 8:803–813 DOI: 10.1038/nrg2192
-
(2007)
Nat Rev Genet
, vol.8
, pp. 803-813
-
-
Lynch, M.1
-
65
-
-
34547396004
-
The frailty of adaptive hypotheses for the origins of organismal complexity
-
Lynch M (2007b) The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci USA 104:8597–8604 DOI: 10.1073/pnas.0702207104
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8597-8604
-
-
Lynch, M.1
-
68
-
-
84885592916
-
Coupling simulation and experiment: the bimodal strategy in integrative systems biology
-
MacLeod M, Nersessian N (2013) Coupling simulation and experiment: the bimodal strategy in integrative systems biology. Stud Hist Phil Biol Biomed Sci 44:572–584 DOI: 10.1016/j.shpsc.2013.07.001
-
(2013)
Stud Hist Phil Biol Biomed Sci
, vol.44
, pp. 572-584
-
-
MacLeod, M.1
Nersessian, N.2
-
69
-
-
65949084005
-
Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation
-
Manu SS, Spirov AV, Gursky VV et al (2009a) Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation. PLoS Biol 7:e1000049 DOI: 10.1371/journal.pbio.1000049
-
(2009)
PLoS Biol
, vol.7
-
-
Manu, S.S.1
Spirov, A.V.2
Gursky, V.V.3
-
70
-
-
63549100975
-
Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors
-
Manu SS, Spirov AV, Gursky VV et al (2009b) Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors. PLoS Comput Biol 5:e1000303 DOI: 10.1371/journal.pcbi.1000303
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Manu, S.S.1
Spirov, A.V.2
Gursky, V.V.3
-
71
-
-
0021074544
-
How to carry out the adaptationist program?
-
Mayr E (1983) How to carry out the adaptationist program? Am Nat 121:324–334 DOI: 10.1086/284064
-
(1983)
Am Nat
, vol.121
, pp. 324-334
-
-
Mayr, E.1
-
73
-
-
84858225884
-
Stemness: definitions, criteria, and standards
-
Lanza R, Gearhart J, Hogan B, (eds), Academic Press, San Diego
-
Melton D, Cowan C (2009) Stemness: definitions, criteria, and standards. In: Lanza R, Gearhart J, Hogan B et al (eds) Essentials of stem cell biology. Academic Press, San Diego, pp xxii–xxix
-
(2009)
Essentials of stem cell biology
-
-
Melton, D.1
Cowan, C.2
-
74
-
-
0025991216
-
A connectionist model of development
-
Mjolsness E, Sharp DH, Reinitz J (1991) A connectionist model of development. J Theor Biol 152:429–453 DOI: 10.1016/S0022-5193(05)80391-1
-
(1991)
J Theor Biol
, vol.152
, pp. 429-453
-
-
Mjolsness, E.1
Sharp, D.H.2
Reinitz, J.3
-
75
-
-
0027584195
-
Is segmentation generic?
-
Newman SA (1993) Is segmentation generic? BioEssays 15:277–283 DOI: 10.1002/bies.950150409
-
(1993)
BioEssays
, vol.15
, pp. 277-283
-
-
Newman, S.A.1
-
76
-
-
0028139743
-
Generic physical mechanisms of tissue morphogenesis: a common basis for development and evolution
-
Newman SA (1994) Generic physical mechanisms of tissue morphogenesis: a common basis for development and evolution. J Evol Biol 7:467–488 DOI: 10.1046/j.1420-9101.1994.7040467.x
-
(1994)
J Evol Biol
, vol.7
, pp. 467-488
-
-
Newman, S.A.1
-
77
-
-
84866784262
-
Evolutionary systems biology: historical and philosophical perspectives on an emerging synthesis
-
Soyer O, (ed), Springer, London
-
O’Malley M (2012) Evolutionary systems biology: historical and philosophical perspectives on an emerging synthesis. In: Soyer O (ed) Evolutionary systems biology. Springer, London, pp 1–28 DOI: 10.1007/978-1-4614-3567-9_1
-
(2012)
Evolutionary systems biology
, pp. 1-28
-
-
O’Malley, M.1
-
78
-
-
0001618469
-
Evolution and bifurcation of developmental programs
-
Oster G, Alberch P (1982) Evolution and bifurcation of developmental programs. Evolution 36:444–459 DOI: 10.2307/2408093
-
(1982)
Evolution
, vol.36
, pp. 444-459
-
-
Oster, G.1
Alberch, P.2
-
79
-
-
80052031934
-
Systems-biology approaches for predicting genomic evolution
-
Papp B, Notebaart RA, Pál C (2011) Systems-biology approaches for predicting genomic evolution. Nat Rev Genet 12:591–602 DOI: 10.1038/nrg3033
-
(2011)
Nat Rev Genet
, vol.12
, pp. 591-602
-
-
Papp, B.1
Notebaart, R.A.2
Pál, C.3
-
80
-
-
67649668678
-
An extended synthesis for evolutionary biology
-
Pigliucci M (2009) An extended synthesis for evolutionary biology. Ann NY Acad Sci 1168:218–228 DOI: 10.1111/j.1749-6632.2009.04578.x
-
(2009)
Ann NY Acad Sci
, vol.1168
, pp. 218-228
-
-
Pigliucci, M.1
-
81
-
-
76749127527
-
Genotype-phenotype mapping and the end of the “genes as blueprint” metaphor
-
Pigliucci M (2010) Genotype-phenotype mapping and the end of the “genes as blueprint” metaphor. Phil Trans R Soc Lond B 365:557–566 DOI: 10.1098/rstb.2009.0241
-
(2010)
Phil Trans R Soc Lond B
, vol.365
, pp. 557-566
-
-
Pigliucci, M.1
-
83
-
-
34249866204
-
On the origin of the term “stem cell
-
Ramalho-Santos M, Willenbring H (2007) On the origin of the term “stem cell”. Cell Stem Cell 1:35–38 DOI: 10.1016/j.stem.2007.05.013
-
(2007)
Cell Stem Cell
, vol.1
, pp. 35-38
-
-
Ramalho-Santos, M.1
Willenbring, H.2
-
84
-
-
0028897360
-
Mechanism of eve stripe formation
-
Reinitz J, Sharp DH (1995) Mechanism of eve stripe formation. Mech Dev 49:133–158 DOI: 10.1016/0925-4773(94)00310-J
-
(1995)
Mech Dev
, vol.49
, pp. 133-158
-
-
Reinitz, J.1
Sharp, D.H.2
-
85
-
-
0035182911
-
Complexity, self-organization and selection
-
Richardson R (2001) Complexity, self-organization and selection. Biol Philos 16:653–682 DOI: 10.1023/A:1012030402337
-
(2001)
Biol Philos
, vol.16
, pp. 653-682
-
-
Richardson, R.1
-
87
-
-
33750822510
-
On the origins of morphological disparity and its diverse developmental bases
-
Salazar-Ciudad I (2006) On the origins of morphological disparity and its diverse developmental bases. BioEssays 28:1112–1122 DOI: 10.1002/bies.20482
-
(2006)
BioEssays
, vol.28
, pp. 1112-1122
-
-
Salazar-Ciudad, I.1
-
89
-
-
0027011080
-
Neo-rationalism versus neo-Darwinism: integrating development and evolution
-
Smith KC (1992) Neo-rationalism versus neo-Darwinism: integrating development and evolution. Biol Philos 7:431–451 DOI: 10.1007/BF00130061
-
(1992)
Biol Philos
, vol.7
, pp. 431-451
-
-
Smith, K.C.1
-
90
-
-
84870156157
-
iPSC disease modeling
-
Soldner F, Jaenisch R (2012) iPSC disease modeling. Science 338:1155–1156 DOI: 10.1126/science.1227682
-
(2012)
Science
, vol.338
, pp. 1155-1156
-
-
Soldner, F.1
Jaenisch, R.2
-
91
-
-
84866792141
-
Evolutionary principles underlying structure and response dynamics of cellular networks
-
Soyer O, (ed), Springer, London
-
Steinacher A, Soyer O (2012) Evolutionary principles underlying structure and response dynamics of cellular networks. In: Soyer O (ed) Evolutionary systems biology. Springer, London, pp 225–247 DOI: 10.1007/978-1-4614-3567-9_11
-
(2012)
Evolutionary systems biology
, pp. 225-247
-
-
Steinacher, A.1
Soyer, O.2
-
93
-
-
84878838747
-
Human embryonic stem cells derived by somatic cell nuclear transfer
-
Tachibana M, Amato P, Sparman M et al (2013) Human embryonic stem cells derived by somatic cell nuclear transfer. Cell 153:1–11 DOI: 10.1016/j.cell.2013.05.006
-
(2013)
Cell
, vol.153
, pp. 1-11
-
-
Tachibana, M.1
Amato, P.2
Sparman, M.3
-
95
-
-
0035051264
-
Developmental system drift and flexibility in evolutionary trajectories
-
True J, Haag ES (2001) Developmental system drift and flexibility in evolutionary trajectories. Evol Dev 3:109–119 DOI: 10.1046/j.1525-142x.2001.003002109.x
-
(2001)
Evol Dev
, vol.3
, pp. 109-119
-
-
True, J.1
Haag, E.S.2
-
96
-
-
77949900026
-
An Oct4-centered protein interaction network in embryonic stem cells
-
van den Berg, Debbie LC, Snoek T et al (2010) An Oct4-centered protein interaction network in embryonic stem cells. Cell Stem Cell 6:369–381 DOI: 10.1016/j.stem.2010.02.014
-
(2010)
Cell Stem Cell
, vol.6
, pp. 369-381
-
-
van den Berg1
Debbie, L.C.2
Snoek, T.3
-
99
-
-
41649110614
-
Gene duplications, robustness and evolutionary innovations
-
Wagner A (2008) Gene duplications, robustness and evolutionary innovations. BioEssays 30:367–373 DOI: 10.1002/bies.20728
-
(2008)
BioEssays
, vol.30
, pp. 367-373
-
-
Wagner, A.1
-
100
-
-
81155160112
-
Genotype networks shed light on evolutionary constraints
-
Wagner A (2011a) Genotype networks shed light on evolutionary constraints. Trends Ecol Evol 26:577–584 DOI: 10.1016/j.tree.2011.07.001
-
(2011)
Trends Ecol Evol
, vol.26
, pp. 577-584
-
-
Wagner, A.1
-
102
-
-
80052796317
-
The molecular origins of evolutionary innovations
-
Wagner A (2011c) The molecular origins of evolutionary innovations. Trends Genet 27:397–410 DOI: 10.1016/j.tig.2011.06.002
-
(2011)
Trends Genet
, vol.27
, pp. 397-410
-
-
Wagner, A.1
-
104
-
-
67650095196
-
Elite and stochastic models for induced pluripotent stem cell generation
-
Yamanaka S (2009) Elite and stochastic models for induced pluripotent stem cell generation. Nature 460:49–52 DOI: 10.1038/nature08180
-
(2009)
Nature
, vol.460
, pp. 49-52
-
-
Yamanaka, S.1
-
105
-
-
84889246623
-
Single-cell metabolomics: analytical and biological perspectives
-
Zenobi R (2013) Single-cell metabolomics: analytical and biological perspectives. Science 342:124325 DOI: 10.1126/science.1243259
-
(2013)
Science
, vol.342
, pp. 124325
-
-
Zenobi, R.1
-
106
-
-
79151474239
-
Understanding gene circuits at cell-fates branch points for rational cell reprogramming
-
Zhou JX, Huang S (2011) Understanding gene circuits at cell-fates branch points for rational cell reprogramming. Trends Genet 27:55–62 DOI: 10.1016/j.tig.2010.11.002
-
(2011)
Trends Genet
, vol.27
, pp. 55-62
-
-
Zhou, J.X.1
Huang, S.2
-
107
-
-
52949127370
-
Extreme makeover: converting one cell into another
-
Zhou Q, Melton DA (2008) Extreme makeover: converting one cell into another. Cell Stem Cell 3:382–388 DOI: 10.1016/j.stem.2008.09.015
-
(2008)
Cell Stem Cell
, vol.3
, pp. 382-388
-
-
Zhou, Q.1
Melton, D.A.2
|