An insight into the sialome of the lone star tick, Amblyomma americanum, with a glimpse on its time dependent gene expression

PLoS ONE

Volumn 10, Issue 7, 2015, Pages

  Karim, Shahid ^a   Ribeiro, José M C ^b  

^a University of Southern Mississippi   (United States)

^b NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; SALIVA PROTEIN; SIALOME; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ADULT; AMBLYOMMA AMERICANUM; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; FEEDING; FEMALE; GENE EXPRESSION; GENETIC TRANSCRIPTION; NONHUMAN; RNA ISOLATION; RNA SEQUENCE; SALIVARY GLAND; AMINO ACID SEQUENCE; ANIMAL; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; TICK;

AMBLYOMMA AMERICANUM; ANIMALIA; EHRLICHIA; IXODIDA; IXODIDAE; THEILERIA;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; FEMALE; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; SALIVARY PROTEINS AND PEPTIDES; TICKS; TRANSCRIPTOME;

EID: 84940398681     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0131292     Document Type: Article

References (33)

1. Sonenshine D. Biology of Ticks: Oxford University Press, USA; 1992 January 2, 1992. 472 p.
2. Chmelar J, Calvo E, Pedra JH, Francischetti IM, Kotsyfakis M. Tick salivary secretion as a source of antihemostatics. Journal of proteomics. 2012; 75(13):3842-54. doi: 10.1016/j.jprot.2012.04.026 PMID: 22564820; PubMed Central PMCID: PMC3383439.
3. Francischetti IMB, Sá-Nunes A, Mans BJ, Santos IM, Ribeiro JMC. The role of saliva in tick feeding. Frontiers in Biosciences. 2009; 14:2051-88.
4. Hovius JW, Levi M, Fikrig E. Salivating for knowledge: potential pharmacological agents in tick saliva. PLoS medicine. 2008; 5(2):e43. PMID: 18271624. doi: 10.1371/journal.pmed.0050043
5. Kotsyfakis M, Anderson JM, Andersen JF, Calvo E, Francischetti IM, Mather TN, et al. Cutting edge: Immunity against a "silent" salivary antigen of the Lyme vector Ixodes scapularis impairs its ability to feed. J Immunol. 2008; 181(8):5209-12. PMID: 18832673.
6. Childs JE, Paddock CD. The ascendancy of Amblyomma americanum as a vector of pathogens affecting humans in the United States. Annual review of entomology. 2003; 48:307-37. Epub 2002/11/05. doi: 10.1146/annurev.ento.48.091801.112728 PMID: 12414740.
7. Goddard J, Varela-Stokes AS. Role of the lone star tick, Amblyomma americanum (L.), in human and animal diseases. Veterinary parasitology. 2009; 160(1-2):1-12. doi: 10.1016/j.vetpar.2008.10.089 PMID: 19054615.
8. Commins SP, James HR, Kelly LA, Pochan SL, Workman LJ, Perzanowski MS, et al. The relevance of tick bites to the production of IgE antibodies to the mammalian oligosaccharide galactose-alpha-1,3-galactose. The Journal of allergy and clinical immunology. 2011; 127(5):1286-93 e6. Epub 2011/04/02. doi: 10.1016/j.jaci.2011.02.019 PMID: 21453959; PubMed Central PMCID: PMC3085643.
9. Aljamali MN, Hern L, Kupfer D, Downard S, So S, Roe BA, et al. Transcriptome analysis of the salivary glands of the female tick Amblyomma americanum (Acari: Ixodidae). Insect molecular biology. 2009; 18(2):129-54. Epub 2009/03/27. doi: 10.1111/j.1365-2583.2009.00863.x PMID: 19320755.
10. Patrick CD, Hair JA. Laboratory rearing procedures and equipment for multi-host ticks (Acarina: Ixodidae). Journal of medical entomology. 1975; 12(3):389-90. PMID: 1181449.
11. Morgan JF, Morton HJ, Parker RC. Nutrition of animal cells in tissue culture; initial studies on a synthetic medium. Proc Soc Exp Biol Med. 1950; 73(1):1-8. PMID: 15402504.
12. Morgan JF, Campbell ME, Morton HJ. The nutrition of animal tissues cultivated in vitro. I. A survey of natural materials as supplements to synthetic medium 199. Journal of the National Cancer Institute. 1955; 16(2):557-67. PMID: 13263920.
13. Birol I, Jackman SD, Nielsen CB, Qian JQ, Varhol R, Stazyk G, et al. De novo transcriptome assembly with ABySS. Bioinformatics (Oxford, England). 2009; 25(21):2872-7. Epub 2009/06/17. doi: 10.1093/bioinformatics/btp367 PMID: 19528083.
14. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. ABySS: a parallel assembler for short read sequence data. Genome research. 2009; 19(6):1117-23. Epub 2009/03/03. doi: 10.1101/gr.089532.108 PMID: 19251739; PubMed Central PMCID: PMC2694472.
15. Miller JR, Koren S, Sutton G. Assembly algorithms for next-generation sequencing data. Genomics. 2010; 95(6):315-27. Epub 2010/03/10. doi: 10.1016/j.ygeno.2010.03.001 PMID: 20211242; PubMed Central PMCID: PMC2874646.
16. Liu Y, Schmidt B, Maskell DL. Parallelized short read assembly of large genomes using de Bruijn graphs. BMC bioinformatics. 2011; 12:354. Epub 2011/08/27. doi: 10.1186/1471-2105-12-354 PMID: 21867511; PubMed Central PMCID: PMC3167803.
17. Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience. 2012; 1(1):18. doi: 10.1186/2047-217X-1-18 PMID: 23587118; PubMed Central PMCID: PMC3626529.
18. Huang X, Madan A. CAP3: A DNA sequence assembly program. Genome Res. 1999; 9(9):868-77. PMID: 10508846.
19. Karim S, Singh P, Ribeiro JM. A deep insight into the sialotranscriptome of the gulf coast tick, Amblyomma maculatum. PLoS ONE. 2011; 6(12):e28525. Epub 2012/01/05. doi: 10.1371/journal.pone.0028525 PMID: 22216098; PubMed Central PMCID: PMC3244413.
20. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997; 25(17):3389-402. PMID: 9254694
21. Nielsen H, Brunak S, von Heijne G. Machine learning approaches for the prediction of signal peptides and other protein sorting signals. Protein engineering. 1999; 12(1):3-9. PMID: 10065704.
22. Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proceedings of the National Academy of Sciences of the United States of America. 1998; 95(25):14863-8. PMID: 9843981; PubMed Central PMCID: PMC24541.
23. Warnes GR, Bolker B, Bonebakker L, Gentleman R, Liaw WHA, Lumley T, et al. gplots: Various R programming tools for plotting data. R package version 2141. 2015; 2(14).
24. Shamir R, Maron-Katz A, Tanay A, Linhart C, Steinfeld I, Sharan R, et al. EXPANDER - an integrative program suite for microarray data analysis. BMC bioinformatics. 2005; 6:232. Epub 2005/09/24. doi: 10.1186/1471-2105-6-232 PMID: 16176576; PubMed Central PMCID: PMC1261157.
25. Ribeiro JM, Topalis P, Louis C. AnoXcel: an Anopheles gambiae protein database. Insect molecular biology. 2004; 13(5):449-57. PMID: 15373803.
26. Howe EA, Sinha R, Schlauch D, Quackenbush J. RNA-Seq analysis in MeV. Bioinformatics (Oxford, England). 2011; 27(22):3209-10. Epub 2011/10/07. doi: 10.1093/bioinformatics/btr490 PMID: 21976420; PubMed Central PMCID: PMC3208390.
27. Schwarz A, von Reumont BM, Erhart J, Chagas AC, Ribeiro JM, Kotsyfakis M. De novo Ixodes ricinus salivary gland transcriptome analysis using two next-generation sequencing methodologies. Faseb J. 2013; 27(12):4745-56. Epub 2013/08/22. doi: 10.1096/fj.13-232140 PMID: 23964076; PubMed Central PMCID: PMC3834774.
28. Kotsyfakis M, Karim S, Andersen JF, Mather TN, Ribeiro JM. Selective cysteine protease inhibition contributes to blood-feeding success of the tick Ixodes scapularis. The Journal of biological chemistry. 2007; 282(40):29256-63. PMID: 17698852.
29. Pichu S, Yalcin EB, Ribeiro JM, King RS, Mather TN. Molecular characterization of novel sulfotransferases from the tick, Ixodes scapularis. BMC Biochem. 2011; 12:32. Epub 2011/06/29. 1471-2091-12-32 [pii] doi: 10.1186/1471-2091-12-32 PMID: 21708020.
30. Friesen KJ, Kaufman WR. Salivary gland degeneration and vitellogenesis in the ixodid tick Amblyomma hebraeum: Surpassing a critical weight is the prerequisite and detachment from the host is the trigger. J Insect Physiol. 2009; 55(10):936-42. Epub 2009/06/27. doi: 10.1016/j.jinsphys.2009.06.007 PMID: 19555693.
31. Jasinskas A, Zhong J, Barbour AG. Highly prevalent Coxiella sp. bacterium in the tick vector Amblyomma americanum. Applied and environmental microbiology. 2007; 73(1):334-6. Epub 2006/11/07. doi: 10.1128/AEM.02009-06 PMID: 17085709; PubMed Central PMCID: PMC1797106.
32. Schwarz A, Tenzer S, Hackenberg M, Erhart J, Gerhold-Ay A, Mazur J, et al. A systems level analysis reveals transcriptomic and proteomic complexity in Ixodes ricinus midgut and salivary glands during early attachment and feeding. Mol Cell Proteomics. 2014; 13(10):2725-35. Epub 2014/07/23. doi: 10.1074/mcp.M114.039289 PMID: 25048707; PubMed Central PMCID: PMC4188998.
33. Adamson SW, Browning RE, Budachetri K, Ribeiro JMC, Karim S. Knockdown of selenocysteine-specific elongation factor in Amblyomma maculatum alters the pathogen burden of Rickettsia parkeri with epigenetic control by the Sin3 histone deacetylase corepressor complex. PLoS ONE. 2013; 8(11): e82012. PMID: 24282621. doi: 10.1371/journal.pone.0082012