메뉴 건너뛰기




Volumn 6, Issue AUG, 2015, Pages

Host and non-host roots in rice: Cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi

Author keywords

Arbuscular mycorrhizal symbiosis; Lateral root; Oryza sativa; RNA seq; Root apparatus

Indexed keywords

FUNGI; ORYZA SATIVA;

EID: 84940207406     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2015.00636     Document Type: Article
Times cited : (70)

References (78)
  • 1
    • 79958150155 scopus 로고    scopus 로고
    • Expression analysis of the nucleocytoplasmic lectin 'Orysata' from rice in Pichia pastoris
    • Al Atalah, B., Fouquaert, E., Vanderschaeghe, D., Proost, P., Balzarini, J., Smith, D. F., et al. (2011). Expression analysis of the nucleocytoplasmic lectin 'Orysata' from rice in Pichia pastoris. FEBS J. 278, 2064-2079. doi: 10.1111/j.1742-4658.2011.08122.x
    • (2011) FEBS J , vol.278 , pp. 2064-2079
    • Al Atalah, B.1    Fouquaert, E.2    Vanderschaeghe, D.3    Proost, P.4    Balzarini, J.5    Smith, D.F.6
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol. 11, R106. doi: 10.1186/gb-2010-11-10-r106
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 3
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq - A Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T., and Huber, W. (2015). HTSeq - A Python framework to work with high-throughput sequencing data.Bioinformatics 31, 166-169. doi: 10.1093/bioinformatics/btu638
    • (2015) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 4
    • 84871225158 scopus 로고    scopus 로고
    • Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes
    • Bagnaresi, P., Biselli, C., Orrù, L., Urso, S., Crispino, L., Abbruscato, P., et al. (2012). Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes. PLoS ONE7:e51609. doi: 10.1371/journal.pone.0051609
    • (2012) PLoS ONE , vol.7
    • Bagnaresi, P.1    Biselli, C.2    Orrù, L.3    Urso, S.4    Crispino, L.5    Abbruscato, P.6
  • 5
    • 84885127389 scopus 로고    scopus 로고
    • Maize root lectins mediate the interaction with Herbaspirillum seropedicae via N-acetyl glucosamine residues of lipopolysaccharides
    • Balsanelli, E., Tuleski, T. R., de Baura, V. A., Yates, M. G., Chubatsu, L. S., Pedrosa, F. de O., et al. (2013). Maize root lectins mediate the interaction with Herbaspirillum seropedicae via N-acetyl glucosamine residues of lipopolysaccharides. PLoS ONE8:e77001. doi: 10.1371/journal.pone.0077001
    • (2013) PLoS ONE , vol.8
    • Balsanelli, E.1    Tuleski, T.R.2    de Baura, V.A.3    Yates, M.G.4    Chubatsu, L.S.5    de Pedrosa, F.O.6
  • 6
    • 84982635784 scopus 로고
    • Early events of vesicular arbuscular mycorrhizal formation on Ri T-DNA transformed roots
    • Bécard, G., and Fortin, J. A. (1988). Early events of vesicular arbuscular mycorrhizal formation on Ri T-DNA transformed roots. New Phytol. 108, 211-218. doi: 10.1111/j.1469-8137.1988.tb03698.x
    • (1988) New Phytol , vol.108 , pp. 211-218
    • Bécard, G.1    Fortin, J.A.2
  • 7
    • 0034490338 scopus 로고    scopus 로고
    • Induction of Ltp (lipid transfer protein) and Pal (phenylalanine ammonia-lyase) gene expression in rice roots colonized by the arbuscular mycorrhizal fungus Glomus mosseae
    • Blilou, I., Ocampo, J. A., and García-Garrido, J. M. (2000). Induction of Ltp (lipid transfer protein) and Pal (phenylalanine ammonia-lyase) gene expression in rice roots colonized by the arbuscular mycorrhizal fungus Glomus mosseae. J. Exp. Bot. 51, 1969-1977. doi: 10.1093/jexbot/51.353.1969
    • (2000) J. Exp. Bot , vol.51 , pp. 1969-1977
    • Blilou, I.1    Ocampo, J.A.2    García-Garrido, J.M.3
  • 8
    • 50249237887 scopus 로고    scopus 로고
    • Plants and arbuscular mycorrhizal fungi: An evolutionary-developmental perspective
    • Bonfante, P., and Genre, A. (2008). Plants and arbuscular mycorrhizal fungi: an evolutionary-developmental perspective.Trends Plant Sci. 13, 492-498. doi: 10.1016/j.tplants.2008.07.001
    • (2008) Trends Plant Sci , vol.13 , pp. 492-498
    • Bonfante, P.1    Genre, A.2
  • 9
    • 84924071707 scopus 로고    scopus 로고
    • Arbuscular mycorrhizal dialogues: Do you speak 'plantish' or 'fungish'?
    • Bonfante, P., and Genre, A. (2015). Arbuscular mycorrhizal dialogues: do you speak 'plantish' or 'fungish'? Trends Plant Sci. 20, 150-154. doi: 10.1016/j.tplants.2014.12.002
    • (2015) Trends Plant Sci , vol.20 , pp. 150-154
    • Bonfante, P.1    Genre, A.2
  • 10
    • 79960714380 scopus 로고    scopus 로고
    • Dating in the dark: How roots respond to fungal signals to establish arbuscular mycorrhizal symbiosis
    • Bonfante, P., and Requena, N. (2011). Dating in the dark: how roots respond to fungal signals to establish arbuscular mycorrhizal symbiosis. Curr. Opin. Plant Biol. 14, 451-457. doi: 10.1016/j.pbi.2011.03.014
    • (2011) Curr. Opin. Plant Biol , vol.14 , pp. 451-457
    • Bonfante, P.1    Requena, N.2
  • 11
    • 0036237727 scopus 로고    scopus 로고
    • Coevolution of roots and mycorrhizas of land plants
    • Brundrett, M. C. (2002). Coevolution of roots and mycorrhizas of land plants. New Phytol. 154, 275-304. doi: 10.1046/j.1469-8137.2002.00397.x
    • (2002) New Phytol , vol.154 , pp. 275-304
    • Brundrett, M.C.1
  • 12
    • 0025774704 scopus 로고
    • Efficient lipid staining in plant material with sudan red 7B or fluorol yellow 088 in polyethylene glycol glycerol
    • Brundrett, M. C., Kendrick, B., and Peterson, C. A. (1991). Efficient lipid staining in plant material with sudan red 7B or fluorol yellow 088 in polyethylene glycol glycerol. Biotech. Histochem. 66, 111-116. doi: 10.3109/10520299109110562
    • (1991) Biotech. Histochem , vol.66 , pp. 111-116
    • Brundrett, M.C.1    Kendrick, B.2    Peterson, C.A.3
  • 13
    • 77957127402 scopus 로고    scopus 로고
    • Activation of basal defense mechanisms of rice plants byGlomus intraradices does not affect the arbuscular mycorrhizal symbiosis
    • Campos-Soriano, L., García-Garrido, J. M., and Segundo, B. S. (2010). Activation of basal defense mechanisms of rice plants byGlomus intraradices does not affect the arbuscular mycorrhizal symbiosis. New Phytol. 188, 597-614. doi: 10.1111/j.1469-8137.2010.03386.x
    • (2010) New Phytol , vol.188 , pp. 597-614
    • Campos-Soriano, L.1    García-Garrido, J.M.2    Segundo, B.S.3
  • 14
    • 84893826202 scopus 로고    scopus 로고
    • Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs
    • Cardoso, C., Zhang, Y., Jamil, M., Hepworth, J., Charnikhova, T., Dimkpa, S. O., et al. (2014). Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs. Proc. Natl. Acad. Sci. U.S.A. 6, 2379-2384. doi: 10.1073/pnas.1317360111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.6 , pp. 2379-2384
    • Cardoso, C.1    Zhang, Y.2    Jamil, M.3    Hepworth, J.4    Charnikhova, T.5    Dimkpa, S.O.6
  • 15
    • 77950613366 scopus 로고    scopus 로고
    • Genetic control of root development in rice, the model cereal
    • Coudert, Y., Périn, C., Courtois, B., Khong, N. G., and Gantet, P. (2010). Genetic control of root development in rice, the model cereal. Trends Plant Sci. 15, 219-226. doi: 10.1016/j.tplants.2010.01.008
    • (2010) Trends Plant Sci , vol.15 , pp. 219-226
    • Coudert, Y.1    Périn, C.2    Courtois, B.3    Khong, N.G.4    Gantet, P.5
  • 16
    • 34247515226 scopus 로고    scopus 로고
    • An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
    • Cui, H., Levesque, M. P., Vernoux, T., Jung, J. W., Paquette, A. J., Gallagher, K. L., et al. (2007). An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316, 421-425. doi: 10.1126/science.1139531
    • (2007) Science , vol.316 , pp. 421-425
    • Cui, H.1    Levesque, M.P.2    Vernoux, T.3    Jung, J.W.4    Paquette, A.J.5    Gallagher, K.L.6
  • 17
    • 84878563088 scopus 로고    scopus 로고
    • Evolution of the plant-microbe symbiotic 'toolkit'
    • Delaux, P. M., Séjalon-Delmas, N., Bécard, G., and Ané, J. M. (2013). Evolution of the plant-microbe symbiotic 'toolkit'. Trends Plant Sci. 18, 298-304. doi: 10.1016/j.tplants.2013.01.008
    • (2013) Trends Plant Sci , vol.18 , pp. 298-304
    • Delaux, P.M.1    Séjalon-Delmas, N.2    Bécard, G.3    Ané, J.M.4
  • 19
    • 84874706525 scopus 로고    scopus 로고
    • Plant hormones in arbuscular mycorrhizal symbioses: An emerging role for gibberellins
    • Foo, E., Ross, J. J., Jones, W. T., and Reid, J. B. (2013). Plant hormones in arbuscular mycorrhizal symbioses: an emerging role for gibberellins. Ann. Bot. 111, 769-779. doi: 10.1093/aob/mct041
    • (2013) Ann. Bot , vol.111 , pp. 769-779
    • Foo, E.1    Ross, J.J.2    Jones, W.T.3    Reid, J.B.4
  • 20
    • 0032406393 scopus 로고    scopus 로고
    • The expression of the salt-responsive gene salT from rice is regulated by hormonal and developmental cues
    • Garcia, A. B., Engler Jde, A., Claes, B., Villarroel, R., Van Montagu, M., Gerats, T., et al. (1998). The expression of the salt-responsive gene salT from rice is regulated by hormonal and developmental cues. Planta 207, 172-180. doi: 10.1007/s004250050470
    • (1998) Planta , vol.207 , pp. 172-180
    • Garcia, A.B.1    Engler Jde, A.2    Claes, B.3    Villarroel, R.4    Van Montagu, M.5    Gerats, T.6
  • 21
    • 84870490104 scopus 로고    scopus 로고
    • A GRAS-type transcription factor with a specific function in mycorrhizal signaling
    • Gobbato, E., Marsh, J. F., Vernié, T., Wang, E., Maillet, F., Kim, J., et al. (2012). A GRAS-type transcription factor with a specific function in mycorrhizal signaling. Curr. Biol. 22, 2236-2241. doi: 10.1016/j.cub.2012.09.044
    • (2012) Curr. Biol , vol.22 , pp. 2236-2241
    • Gobbato, E.1    Marsh, J.F.2    Vernié, T.3    Wang, E.4    Maillet, F.5    Kim, J.6
  • 22
    • 84885199593 scopus 로고    scopus 로고
    • RAM1 and RAM2 function and expression during arbuscular mycorrhizal symbiosis and Aphanomyces euteiches colonization
    • Gobbato, E., Wang, E., Higgins, G., Bano, S. A., Henry, C., Schultze, M., et al. (2013). RAM1 and RAM2 function and expression during arbuscular mycorrhizal symbiosis and Aphanomyces euteiches colonization. Plant Signal. Behav. 8:e26049. doi: 10.4161/psb.26049
    • (2013) Plant Signal. Behav , vol.8
    • Gobbato, E.1    Wang, E.2    Higgins, G.3    Bano, S.A.4    Henry, C.5    Schultze, M.6
  • 23
    • 61649099340 scopus 로고    scopus 로고
    • Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus
    • Guether, M., Balestrini, R., Hannah, M. A., Udvardi, M. K., and Bonfante, P. (2009). Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytol. 182, 200-212. doi: 10.1111/j.1469-8137.2008.02725.x
    • (2009) New Phytol , vol.182 , pp. 200-212
    • Guether, M.1    Balestrini, R.2    Hannah, M.A.3    Udvardi, M.K.4    Bonfante, P.5
  • 24
    • 20344370489 scopus 로고    scopus 로고
    • Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization
    • Güimil, S., Chang, H. S., Zhu, T., Sesma, A., Osbourn, A., Roux, C., et al. (2005). Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization. Proc. Natl. Acad. Sci. U.S.A. 102, 8066-8070. doi: 10.1073/pnas.0502999102
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 8066-8070
    • Güimil, S.1    Chang, H.S.2    Zhu, T.3    Sesma, A.4    Osbourn, A.5    Roux, C.6
  • 25
    • 58549108027 scopus 로고    scopus 로고
    • Arbuscular mycorrhiza specific signaling in rice transcends the common symbiosis signaling pathway
    • Gutjahr, C., Banba, M., Croset, V., An, K., Miyao, A., An, G., et al. (2008). Arbuscular mycorrhiza specific signaling in rice transcends the common symbiosis signaling pathway. Plant Cell 20, 2989-3005. doi: 10.1105/tpc.108.062414
    • (2008) Plant Cell , vol.20 , pp. 2989-3005
    • Gutjahr, C.1    Banba, M.2    Croset, V.3    An, K.4    Miyao, A.5    An, G.6
  • 26
    • 65549136646 scopus 로고    scopus 로고
    • Glomus intraradices induces changes in root system architecture of rice independently of common symbiosis signaling
    • Gutjahr, C., Casieri, L., and Paszkowski, U. (2009). Glomus intraradices induces changes in root system architecture of rice independently of common symbiosis signaling. New Phytol. 182, 829-837. doi: 10.1111/j.1469-8137.2009.02839.x
    • (2009) New Phytol , vol.182 , pp. 829-837
    • Gutjahr, C.1    Casieri, L.2    Paszkowski, U.3
  • 27
    • 84879237997 scopus 로고    scopus 로고
    • Cell and developmental biology of arbuscular mycorrhiza symbiosis
    • Gutjahr, C., and Parniske, M. (2013). Cell and developmental biology of arbuscular mycorrhiza symbiosis. Annu. Rev. Cell Dev. Biol. 29, 593-561. doi: 10.1146/annurev-cellbio-101512-122413
    • (2013) Annu. Rev. Cell Dev. Biol , vol.29 , pp. 593-561
    • Gutjahr, C.1    Parniske, M.2
  • 28
    • 84894911071 scopus 로고    scopus 로고
    • Multiple control levels of root system remodeling in arbuscular mycorrhizal symbiosis
    • Gutjahr, C., and Paszkowski, U. (2013). Multiple control levels of root system remodeling in arbuscular mycorrhizal symbiosis.Front. Plant Sci. 4:204. doi: 10.3389/fpls.2013.00204
    • (2013) Front. Plant Sci , vol.4 , pp. 204
    • Gutjahr, C.1    Paszkowski, U.2
  • 29
    • 84857640553 scopus 로고    scopus 로고
    • The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice
    • Gutjahr, C., Radovanovic, D., Geoffroy, J., Zhang, Q., Siegler, H., Chiapello, M., et al. (2012). The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice. Plant J. 69, 906-920. doi: 10.1111/j.1365-313X.2011.04842.x
    • (2012) Plant J , vol.69 , pp. 906-920
    • Gutjahr, C.1    Radovanovic, D.2    Geoffroy, J.3    Zhang, Q.4    Siegler, H.5    Chiapello, M.6
  • 30
    • 84930227071 scopus 로고    scopus 로고
    • Transcriptome diversity among rice root-types during asymbiosis and interaction with arbuscular mycorrhizal fungi
    • Gutjahr, C., Sawers, R. J. H., Marti, G., Andrés-Hernández, L., Yang, S. Y., Casieri, L., et al. (2015). Transcriptome diversity among rice root-types during asymbiosis and interaction with arbuscular mycorrhizal fungi. Proc. Natl. Acad. Sci. U.S.A. 112, 6754-6759. doi: 10.1073/pnas.1504142112
    • (2015) Proc. Natl. Acad. Sci. U.S.A , vol.112 , pp. 6754-6759
    • Gutjahr, C.1    Sawers, R.J.H.2    Marti, G.3    Andrés-Hernández, L.4    Yang, S.Y.5    Casieri, L.6
  • 31
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological statistics software package for education and data analysis
    • Hammer, Ø., Harper, D. A. T., and Ryan, P. D. (2001). PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4, 9.
    • (2001) Palaeontol. Electron , vol.4 , pp. 9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.D.3
  • 33
    • 0003115603 scopus 로고
    • Freeze-substitution of fungi
    • eds H. C. Aldrich and W. J. Todd (New York, NY: Plenum Press)
    • Hoch, H. C. (1986). "Freeze-substitution of fungi," in Ultrastructure Techniques of Microorganisms, eds H. C. Aldrich and W. J. Todd (New York, NY: Plenum Press), 183-211. doi: 10.1007/978-1-4684-5119-1_7
    • (1986) Ultrastructure Techniques of Microorganisms , pp. 183-211
    • Hoch, H.C.1
  • 34
    • 38649111638 scopus 로고    scopus 로고
    • Conserved and diverse mechanisms in root development
    • Hochholdinger, F., and Zimmermann, R. (2008). Conserved and diverse mechanisms in root development. Curr. Opin. Plant Biol. 11, 70-74. doi: 10.1016/j.pbi.2007.10.002
    • (2008) Curr. Opin. Plant Biol , vol.11 , pp. 70-74
    • Hochholdinger, F.1    Zimmermann, R.2
  • 35
    • 0027098596 scopus 로고
    • Vesicular-arbuscular mycorrhizal fungi induced alteration in poplar root system morphology
    • Hooker, J. E., Munro, M., and Atkinson, D. (1992). Vesicular-arbuscular mycorrhizal fungi induced alteration in poplar root system morphology. Plant Soil 145, 207-214. doi: 10.1007/BF00010349
    • (1992) Plant Soil , vol.145 , pp. 207-214
    • Hooker, J.E.1    Munro, M.2    Atkinson, D.3
  • 36
    • 0038687224 scopus 로고    scopus 로고
    • Rice root properties for internal aeration and efficient nutrient acquisition in submerged soil
    • Kirk, G. J. D. (2003). Rice root properties for internal aeration and efficient nutrient acquisition in submerged soil. New Phytol. 159, 185-194. doi: 10.1046/j.1469-8137.2003.00793.x
    • (2003) New Phytol , vol.159 , pp. 185-194
    • Kirk, G.J.D.1
  • 37
    • 79960710804 scopus 로고    scopus 로고
    • A secreted fungal effector of Glomus intraradices promotes symbiotic biotrophy
    • Kloppholz, S., Kuhn, H., and Requena, N. (2011). A secreted fungal effector of Glomus intraradices promotes symbiotic biotrophy. Curr. Biol. 21, 1204-1209. doi: 10.1016/j.cub.2011.06.044
    • (2011) Curr. Biol , vol.21 , pp. 1204-1209
    • Kloppholz, S.1    Kuhn, H.2    Requena, N.3
  • 38
    • 84874542258 scopus 로고    scopus 로고
    • Identification of SHRUBBY, a SHORT-ROOT and SCARECROW interacting protein that controls root growth and radial patterning
    • Koizumi, K., and Gallagher, K. L. (2013). Identification of SHRUBBY, a SHORT-ROOT and SCARECROW interacting protein that controls root growth and radial patterning. Development 140, 1292-1300. doi: 10.1242/dev.090761
    • (2013) Development , vol.140 , pp. 1292-1300
    • Koizumi, K.1    Gallagher, K.L.2
  • 39
    • 84996356688 scopus 로고
    • Studies on the developmental physiology of the lateral roots in rice seminal roots
    • Kono, Y., Igeta, M., and Yamada, N. (1972). Studies on the developmental physiology of the lateral roots in rice seminal roots.Proc. Crop Sci. Soc. Jpn. 41, 192-204. doi: 10.1626/jcs.41.192
    • (1972) Proc. Crop Sci. Soc. Jpn , vol.41 , pp. 192-204
    • Kono, Y.1    Igeta, M.2    Yamada, N.3
  • 40
    • 84856534511 scopus 로고    scopus 로고
    • Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level
    • Krüger, M., Krüger, C., Walker, C., Stockinger, H., and Schußler, A. (2012). Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New Phytol. 193, 970-984. doi: 10.1111/j.1469-8137.2011.03962.x
    • (2012) New Phytol , vol.193 , pp. 970-984
    • Krüger, M.1    Krüger, C.2    Walker, C.3    Stockinger, H.4    Schußler, A.5
  • 41
    • 84884984459 scopus 로고    scopus 로고
    • Interactions between arbuscular mycorrhizal andnon-mycorrhizal plants: Do non-mycorrhizal species at both extremes of nutrient availability play the same game?
    • Lambers, H., and Teste, F. P. (2013). Interactions between arbuscular mycorrhizal andnon-mycorrhizal plants: do non-mycorrhizal species at both extremes of nutrient availability play the same game? Plant Cell Environ. 36, 1911-1915. doi: 10.1111/pce.12117
    • (2013) Plant Cell Environ , vol.36 , pp. 1911-1915
    • Lambers, H.1    Teste, F.P.2
  • 42
    • 84898056944 scopus 로고    scopus 로고
    • Mercator: A fast and simple web server for genome scale functional annotation of plant sequence data
    • Lohse, M., Nagel, A., Herter, T., May, P., Schroda, M., Zrenner, R., et al. (2014). Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environ. 37, 1250-1258. doi: 10.1111/pce.12231
    • (2014) Plant Cell Environ , vol.37 , pp. 1250-1258
    • Lohse, M.1    Nagel, A.2    Herter, T.3    May, P.4    Schroda, M.5    Zrenner, R.6
  • 43
    • 77954735341 scopus 로고    scopus 로고
    • Hormonal and transcriptional profiles highlight common and Differential host responses to arbuscular mycorrhizal fungi and the regulation of the oxylipin pathway
    • López-Ráez, J. A., Verhage, A., Fernández, I., García, J. M., Azcón-Aguilar, C., Flors, V., et al. (2010). Hormonal and transcriptional profiles highlight common and Differential host responses to arbuscular mycorrhizal fungi and the regulation of the oxylipin pathway. J. Exp. Bot. 61, 2589-2601. doi: 10.1093/jxb/erq089
    • (2010) J. Exp. Bot , vol.61 , pp. 2589-2601
    • López-Ráez, J.A.1    Verhage, A.2    Fernández, I.3    García, J.M.4    Azcón-Aguilar, C.5    Flors, V.6
  • 44
    • 74249087507 scopus 로고    scopus 로고
    • Overexpression of a wheat jasmonate regulated lectin increases pathogen resistance
    • Ma, Q. H., Tian, B., and Li, Y. L. (2010). Overexpression of a wheat jasmonate regulated lectin increases pathogen resistance.Biochimie 92, 187-193. doi: 10.1016/j.biochi.2009.11.008
    • (2010) Biochimie , vol.92 , pp. 187-193
    • Ma, Q.H.1    Tian, B.2    Li, Y.L.3
  • 45
    • 84873154752 scopus 로고    scopus 로고
    • CYP714B1 and CYP714B2encode gibberellin 13-oxidases that reduce gibberellin activity in rice
    • Magome, H., Nomura, T., Hanada, A., Takeda-Kamiya, N., Ohnishi, T., Shinma, Y., et al. (2013). CYP714B1 and CYP714B2encode gibberellin 13-oxidases that reduce gibberellin activity in rice. Proc. Natl. Acad. Sci. U.S.A. 110, 1947-1952. doi: 10.1073/pnas.1215788110
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. 1947-1952
    • Magome, H.1    Nomura, T.2    Hanada, A.3    Takeda-Kamiya, N.4    Ohnishi, T.5    Shinma, Y.6
  • 46
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 17, 3. doi: 10.14806/ej.17.1.200
    • (2011) EMBnet J , vol.17 , pp. 3
    • Martin, M.1
  • 47
    • 84876379435 scopus 로고    scopus 로고
    • Speak, friend, and enter: Signalling systems that promote beneficial symbiotic associations in plants
    • Oldroyd, G. E. (2013). Speak, friend, and enter: signalling systems that promote beneficial symbiotic associations in plants.Nat. Rev. Microbiol. 4, 252-263. doi: 10.1038/nrmicro2990
    • (2013) Nat. Rev. Microbiol , vol.4 , pp. 252-263
    • Oldroyd, G.E.1
  • 48
    • 65649126066 scopus 로고    scopus 로고
    • Transcript length bias in RNA-seq data confounds systems biology
    • Oshlack, A., and Wakefield, M. J. (2009). Transcript length bias in RNA-seq data confounds systems biology. Biol. Direct 16, 4-14. doi: 10.1186/1745-6150-4-14
    • (2009) Biol. Direct , vol.16 , pp. 4-14
    • Oshlack, A.1    Wakefield, M.J.2
  • 49
    • 26944437923 scopus 로고    scopus 로고
    • Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT
    • Paquette, A. J., and Benfey, P. N. (2005). Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT. Plant Physiol. 138, 636-640. doi: 10.1104/pp.104.058362
    • (2005) Plant Physiol , vol.138 , pp. 636-640
    • Paquette, A.J.1    Benfey, P.N.2
  • 50
    • 0036792056 scopus 로고    scopus 로고
    • Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis
    • Paszkowski, U., Kroken, S., Roux, C., and Briggs, S. P. (2002). Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis. Proc. Natl. Acad. Sci. U.S.A. 99, 13324-13329. doi: 10.1073/pnas.202474599
    • (2002) Proc. Natl. Acad. Sci. U.S.A , vol.99 , pp. 13324-13329
    • Paszkowski, U.1    Kroken, S.2    Roux, C.3    Briggs, S.P.4
  • 51
    • 80053253568 scopus 로고    scopus 로고
    • GintAMT2, a new member of the ammonium transporter family in the arbuscular mycorrhizal fungus Glomus intraradices
    • Pérez-Tienda, J., Testillano, P. S., Balestrini, R., Fiorilli, V., Azcón-Aguilar, C., and Ferrol, N. (2011). GintAMT2, a new member of the ammonium transporter family in the arbuscular mycorrhizal fungus Glomus intraradices. Fungal Genet. Biol.48, 1044-1055. doi: 10.1016/j.fgb.2011.08.003
    • (2011) Fungal Genet. Biol , vol.48 , pp. 1044-1055
    • Pérez-Tienda, J.1    Testillano, P.S.2    Balestrini, R.3    Fiorilli, V.4    Azcón-Aguilar, C.5    Ferrol, N.6
  • 52
    • 84901397183 scopus 로고    scopus 로고
    • Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes
    • Plett, J. M., Daguerre, Y., Wittulsky, S., Vayssières, A., Deveau, A., Melton, S. J., et al. (2014). Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes.Proc. Natl. Acad. Sci. U.S.A. 111, 8299-8304. doi: 10.1073/pnas.1322671111
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. 8299-8304
    • Plett, J.M.1    Daguerre, Y.2    Wittulsky, S.3    Vayssières, A.4    Deveau, A.5    Melton, S.J.6
  • 53
    • 0036008868 scopus 로고    scopus 로고
    • Localized versus systemic effect of arbuscular mycorrhizal fungi on defence responses to Phytophthora infection in tomato plants
    • Pozo, M. J., Cordier, C., Dumas-Gaudot, E., Gianinazzi, S., Barea, J. M., and Azcón-Aguilar, C. (2002). Localized versus systemic effect of arbuscular mycorrhizal fungi on defence responses to Phytophthora infection in tomato plants. J. Exp. Bot. 53, 525-534. doi: 10.1093/jexbot/53.368.525
    • (2002) J. Exp. Bot , vol.53 , pp. 525-534
    • Pozo, M.J.1    Cordier, C.2    Dumas-Gaudot, E.3    Gianinazzi, S.4    Barea, J.M.5    Azcón-Aguilar, C.6
  • 54
    • 0041828686 scopus 로고    scopus 로고
    • Identification of a lectin gene induced in rice in response to Magnaporthe grisea infection
    • Qin, Q. M., Zhang, Q., Zhao, W. S., Wang, Y. Y., and Peng, Y. L. (2003). Identification of a lectin gene induced in rice in response to Magnaporthe grisea infection. Acta Bot. Sin. 45, 76-81.
    • (2003) Acta Bot. Sin , vol.45 , pp. 76-81
    • Qin, Q.M.1    Zhang, Q.2    Zhao, W.S.3    Wang, Y.Y.4    Peng, Y.L.5
  • 56
    • 84884201908 scopus 로고    scopus 로고
    • An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)
    • Redecker, D., Schüssler, A., Stockinger, H., Stürmer, S. L., Morton, J. B., and Walker, C. (2013). An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota). Mycorrhiza 23, 515-531. doi: 10.1007/s00572-013-0486-y
    • (2013) Mycorrhiza , vol.23 , pp. 515-531
    • Redecker, D.1    Schüssler, A.2    Stockinger, H.3    Stürmer, S.L.4    Morton, J.B.5    Walker, C.6
  • 57
    • 52649114611 scopus 로고
    • The use of lead citrate at high pH as an electron opaque stain in electron microscopy
    • Reynolds, E. W. (1963). The use of lead citrate at high pH as an electron opaque stain in electron microscopy. J. Cell Biol. 17, 208-212. doi: 10.1083/jcb.17.1.208
    • (1963) J. Cell Biol , vol.17 , pp. 208-212
    • Reynolds, E.W.1
  • 58
    • 84871728617 scopus 로고    scopus 로고
    • Rhizobial and mycorrhizal symbioses inLotusjaponicus require lectin nucleotide phosphohydrolase, which acts upstream of calcium signaling
    • Roberts, N. J., Morieri, G., Kalsi, G., Rose, A., Stiller, J., Edwards, A., et al. (2013). Rhizobial and mycorrhizal symbioses inLotusjaponicus require lectin nucleotide phosphohydrolase, which acts upstream of calcium signaling. Plant Physiol. 161, 556-567. doi: 10.1104/pp.112.206110
    • (2013) Plant Physiol , vol.161 , pp. 556-567
    • Roberts, N.J.1    Morieri, G.2    Kalsi, G.3    Rose, A.4    Stiller, J.5    Edwards, A.6
  • 59
    • 0001797832 scopus 로고
    • General preparation and staining of thin sections
    • eds J. L. Hall and C. Hawes (London, UK: Academic Press)
    • Roland, J. C., and Vian, B. (1991). "General preparation and staining of thin sections," in Electron Microscopy of Plant Cells, eds J. L. Hall and C. Hawes (London, UK: Academic Press), 1-66. doi: 10.1016/b978-0-12-318880-9.50006-5
    • (1991) Electron Microscopy of Plant Cells , pp. 1-66
    • Roland, J.C.1    Vian, B.2
  • 60
    • 84890955795 scopus 로고    scopus 로고
    • Automated analysis of calcium spiking profiles with CaSA software: Two case studies from root-microbe symbioses
    • Russo, G., Spinella, S., Sciacca, E., Bonfante, P., and Genre, A. (2013). Automated analysis of calcium spiking profiles with CaSA software: two case studies from root-microbe symbioses. BMC Plant Biol. 13:224. doi: 10.1186/1471-2229-13-224
    • (2013) BMC Plant Biol , vol.13 , pp. 224
    • Russo, G.1    Spinella, S.2    Sciacca, E.3    Bonfante, P.4    Genre, A.5
  • 61
    • 84895874825 scopus 로고    scopus 로고
    • Signaling events during initiation of arbuscular mycorrhizal symbiosis
    • Schmitz, A. M., and Harrison, M. J. (2014). Signaling events during initiation of arbuscular mycorrhizal symbiosis. J. Integr. Plant Biol. 56, 250-261. doi: 10.1111/jipb.12155
    • (2014) J. Integr. Plant Biol , vol.56 , pp. 250-261
    • Schmitz, A.M.1    Harrison, M.J.2
  • 62
    • 84921976791 scopus 로고    scopus 로고
    • Gibberellins interfere with symbiosis signaling and gene expression and alter colonization by arbuscular mycorrhizal in Lotus japonicus
    • Takeda, N., Handa, Y., Tsuzuki, S., Kojima, M., Sakakibara, H., and Kawaguchi, M. (2015). Gibberellins interfere with symbiosis signaling and gene expression and alter colonization by arbuscular mycorrhizal in Lotus japonicus. Plant Physiol. 167, 545-557. doi: 10.1104/pp.114.247700
    • (2015) Plant Physiol , vol.167 , pp. 545-557
    • Takeda, N.1    Handa, Y.2    Tsuzuki, S.3    Kojima, M.4    Sakakibara, H.5    Kawaguchi, M.6
  • 63
    • 0001658127 scopus 로고
    • Mise en évidence des polysaccharides sur coupes fines en microscopie électronique
    • Thiéry, J. P. (1967). Mise en évidence des polysaccharides sur coupes fines en microscopie électronique. J. Micr. 6, 987-1018.
    • (1967) J. Micr , vol.6 , pp. 987-1018
    • Thiéry, J.P.1
  • 64
    • 12144291195 scopus 로고    scopus 로고
    • MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    • Thimm, O., Bläsing, O., Gibon, Y., Nagel, A., Meyer, S., Krüger, P., et al. (2004). MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37, 914-939. doi: 10.1111/j.1365-313X.2004.02016.x
    • (2004) Plant J , vol.37 , pp. 914-939
    • Thimm, O.1    Bläsing, O.2    Gibon, Y.3    Nagel, A.4    Meyer, S.5    Krüger, P.6
  • 65
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., et al. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7, 562-578. doi: 10.1038/nprot.2012.016
    • (2012) Nat. Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 66
    • 0000983122 scopus 로고
    • Evaluation of VA infection levels in root systems. Research for estimation methods having a functional significance
    • eds V. Gianinazzi-Pearson and S. Gianinazzi (France: INRA Press)
    • Trouvelot, A., Kough, J., and Gianinazzi-Pearson, V. (1986). "Evaluation of VA infection levels in root systems. Research for estimation methods having a functional significance," in Physiological and Genetical Aspects of Mycorrhizae, eds V. Gianinazzi-Pearson and S. Gianinazzi (France: INRA Press), 217-221.
    • (1986) Physiological and Genetical Aspects of Mycorrhizae , pp. 217-221
    • Trouvelot, A.1    Kough, J.2    Gianinazzi-Pearson, V.3
  • 67
    • 84892785603 scopus 로고    scopus 로고
    • Rice flooding negatively impacts root branching and arbuscular mycorrhizal colonization, but not fungal viability
    • Vallino, M., Fiorilli, V., and Bonfante, P. (2014). Rice flooding negatively impacts root branching and arbuscular mycorrhizal colonization, but not fungal viability. Plant Cell Environ. 37, 557-572. doi: 10.1111/pce.12177
    • (2014) Plant Cell Environ , vol.37 , pp. 557-572
    • Vallino, M.1    Fiorilli, V.2    Bonfante, P.3
  • 68
    • 33748941620 scopus 로고    scopus 로고
    • Significance of inducible defense-related proteins in infected plants
    • van Loon, L. C., Rep, M., and Pieterse, C. M. (2006). Significance of inducible defense-related proteins in infected plants. Annu. Rev. Phytopathol. 44, 135-162. doi: 10.1146/annurev.phyto.44.070505.143425
    • (2006) Annu. Rev. Phytopathol , vol.44 , pp. 135-162
    • van Loon, L.C.1    Rep, M.2    Pieterse, C.M.3
  • 69
    • 84884982928 scopus 로고    scopus 로고
    • Arbuscular mycorrhizal fungi reduce growth and infect roots of the non-host plant Arabidopsis thaliana
    • Veiga, R. S., Faccio, A., Genre, A., Pieterse, C. M., Bonfante, P., and van der Heijden, M. G. (2013). Arbuscular mycorrhizal fungi reduce growth and infect roots of the non-host plant Arabidopsis thaliana. Plant Cell Environ. 36, 1926-1937. doi: 10.1111/pce.12102
    • (2013) Plant Cell Environ , vol.36 , pp. 1926-1937
    • Veiga, R.S.1    Faccio, A.2    Genre, A.3    Pieterse, C.M.4    Bonfante, P.5    van der Heijden, M.G.6
  • 70
    • 84873059076 scopus 로고    scopus 로고
    • An AM induced-MYB-family gene ofLotus japonicus (LjMAMI) affects root growth in an AM-independent manner
    • Volpe, V., Dell'Aglio, E., Giovannetti, M., Ruberti, C., Costa, A., Genre, A., et al. (2012). An AM induced-MYB-family gene ofLotus japonicus (LjMAMI) affects root growth in an AM-independent manner. Plant J. 73, 442-455. doi: 10.1111/tpj.12045
    • (2012) Plant J , vol.73 , pp. 442-455
    • Volpe, V.1    Dell'Aglio, E.2    Giovannetti, M.3    Ruberti, C.4    Costa, A.5    Genre, A.6
  • 71
    • 84870544452 scopus 로고    scopus 로고
    • A common signaling process that promotes mycorrhizal and oomycete colonization of plants
    • Wang, E., Schornack, S., Marsh, J. F., Gobbato, E., Schwessinger, B., Eastmond, P., et al. (2012). A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Curr. Biol. 22, 2242-2246. doi: 10.1016/j.cub.2012.09.043
    • (2012) Curr. Biol , vol.22 , pp. 2242-2246
    • Wang, E.1    Schornack, S.2    Marsh, J.F.3    Gobbato, E.4    Schwessinger, B.5    Eastmond, P.6
  • 72
    • 84901409936 scopus 로고    scopus 로고
    • +-ATPase that energizes nutrient uptake during mycorrhizal symbioses in rice and Medicago truncatula
    • +-ATPase that energizes nutrient uptake during mycorrhizal symbioses in rice and Medicago truncatula. Plant Cell 26, 1818-1830. doi: 10.1105/tpc.113.120527
    • (2014) Plant Cell , vol.26 , pp. 1818-1830
    • Wang, E.1    Yu, N.2    Bano, S.A.3    Liu, C.4    Miller, A.J.5    Cousins, D.6
  • 73
    • 82255163278 scopus 로고    scopus 로고
    • A jacalin-related lectin-like gene in wheat is a component of the plant defence system
    • Xiang, Y., Song, M., Wei, Z., Tong, J., Zhang, L., Xiao, L., et al. (2011). A jacalin-related lectin-like gene in wheat is a component of the plant defence system. J. Exp. Bot. 62, 5471-5483. doi: 10.1093/jxb/err226
    • (2011) J. Exp. Bot , vol.62 , pp. 5471-5483
    • Xiang, Y.1    Song, M.2    Wei, Z.3    Tong, J.4    Zhang, L.5    Xiao, L.6
  • 74
    • 84923672934 scopus 로고    scopus 로고
    • Network of GRAS transcription factors involved in the control of arbuscule development in Lotus japonicus
    • Xue, L., Cui, H., Buer, B., Vijayakumar, V., Delaux, P. M., Junkermann, S., et al. (2015). Network of GRAS transcription factors involved in the control of arbuscule development in Lotus japonicus. Plant Physiol. 167, 854-871. doi: 10.1104/pp.114.255430
    • (2015) Plant Physiol , vol.167 , pp. 854-871
    • Xue, L.1    Cui, H.2    Buer, B.3    Vijayakumar, V.4    Delaux, P.M.5    Junkermann, S.6
  • 75
    • 84870659363 scopus 로고    scopus 로고
    • Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family
    • Yang, S. Y., Grønlund, M., Jakobsen, I., Grotemeyer, M. S., Rentsch, D., Miyao, A., et al. (2012). Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family. Plant Cell 24, 4236-4251. doi: 10.1105/tpc.112.104901
    • (2012) Plant Cell , vol.24 , pp. 4236-4251
    • Yang, S.Y.1    Grønlund, M.2    Jakobsen, I.3    Grotemeyer, M.S.4    Rentsch, D.5    Miyao, A.6
  • 76
    • 84891744381 scopus 로고    scopus 로고
    • A DELLA protein complex controls the arbuscular mycorrhizal symbiosis in plants
    • Yu, N., Luo, D., Zhang, X., Liu, J., Wang, W., Jin, Y., et al. (2014). A DELLA protein complex controls the arbuscular mycorrhizal symbiosis in plants. Cell Res. 24, 130-133. doi: 10.1038/cr.2013.167
    • (2014) Cell Res , vol.24 , pp. 130-133
    • Yu, N.1    Luo, D.2    Zhang, X.3    Liu, J.4    Wang, W.5    Jin, Y.6
  • 77
    • 0034072442 scopus 로고    scopus 로고
    • Isolation and characterization of a jacalin-related mannose-binding lectin from salt-stressed rice (Oryza sativa) plants
    • Zhang, W., Peumans, W. J., Barre, A., Houles-Astoul, C., Rovira, P., Rougé, P., et al. (2000). Isolation and characterization of a jacalin-related mannose-binding lectin from salt-stressed rice (Oryza sativa) plants. Planta 210, 970-978. doi: 10.1007/s004250050705
    • (2000) Planta , vol.210 , pp. 970-978
    • Zhang, W.1    Peumans, W.J.2    Barre, A.3    Houles-Astoul, C.4    Rovira, P.5    Rougé, P.6
  • 78
    • 84899114361 scopus 로고    scopus 로고
    • From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism
    • Zouari, I., Salvioli, A., Chialva, M., Novero, M., Miozzi, L., Tenore, G. C., et al. (2014). From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism. BMC Genomics 15:221. doi: 10.1186/1471-2164-15-221
    • (2014) BMC Genomics , vol.15 , pp. 221
    • Zouari, I.1    Salvioli, A.2    Chialva, M.3    Novero, M.4    Miozzi, L.5    Tenore, G.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.