-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein databases search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein databases search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
84876337847
-
Multilocus sequence analysis of Vibrio tapetis, the causative agent of Brown Ring Disease: description of Vibrio tapetis subsp. britannicus subsp. nov
-
Balboa S., Romalde J.L. Multilocus sequence analysis of Vibrio tapetis, the causative agent of Brown Ring Disease: description of Vibrio tapetis subsp. britannicus subsp. nov. Syst. Appl. Microbiol. 2013, 36:183-187.
-
(2013)
Syst. Appl. Microbiol.
, vol.36
, pp. 183-187
-
-
Balboa, S.1
Romalde, J.L.2
-
3
-
-
0000288758
-
The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes
-
Springer-Verlag, Berlin, M.P. Starr, H. Stolp, H.G. Truper, A. Balows, H.G. Schlegel (Eds.)
-
Baumann P., Baumann L. The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes. The prokaryotes 1981, 1302-1330. Springer-Verlag, Berlin. M.P. Starr, H. Stolp, H.G. Truper, A. Balows, H.G. Schlegel (Eds.).
-
(1981)
The prokaryotes
, pp. 1302-1330
-
-
Baumann, P.1
Baumann, L.2
-
4
-
-
84923248154
-
Vibrio celticus sp. nov., a new Vibrio species belonging to the Splendidus clade with pathogenic potential for clams
-
Beaz-Hidalgo R., Diéguez A.L., Cleenwerck I., Balboa S., Doce A., de Vos P., Romalde J.L. Vibrio celticus sp. nov., a new Vibrio species belonging to the Splendidus clade with pathogenic potential for clams. Syst. Appl. Microbiol. 2010, 3:215-222.
-
(2010)
Syst. Appl. Microbiol.
, vol.3
, pp. 215-222
-
-
Beaz-Hidalgo, R.1
Diéguez, A.L.2
Cleenwerck, I.3
Balboa, S.4
Doce, A.5
de Vos, P.6
Romalde, J.L.7
-
5
-
-
57749195743
-
Re-emergence of Vibrio tubiashii in bivalve shellfish aquaculture: severity, environmental drivers, geographic extent and management
-
Elston R.A., Hasegawa H., Humphrey K.L., Polyak I.K., Häse C.C. Re-emergence of Vibrio tubiashii in bivalve shellfish aquaculture: severity, environmental drivers, geographic extent and management. Dis. Aquat. Org. 2008, 82:119-134.
-
(2008)
Dis. Aquat. Org.
, vol.82
, pp. 119-134
-
-
Elston, R.A.1
Hasegawa, H.2
Humphrey, K.L.3
Polyak, I.K.4
Häse, C.C.5
-
6
-
-
0021343489
-
Vibrio tubiashii sp. nov., a pathogen of bivalve mollusks
-
Hada H.S., West P.A., Lee J.V., Stemmler J., Colwell R.R. Vibrio tubiashii sp. nov., a pathogen of bivalve mollusks. Int. J. Syst. Bacteriol. 1984, 34:1-4.
-
(1984)
Int. J. Syst. Bacteriol.
, vol.34
, pp. 1-4
-
-
Hada, H.S.1
West, P.A.2
Lee, J.V.3
Stemmler, J.4
Colwell, R.R.5
-
7
-
-
49049143988
-
Three Vibrio strains pathogenic to larvae of Crassostrea gigas and Ostrea edulis
-
Jeffries V.E. Three Vibrio strains pathogenic to larvae of Crassostrea gigas and Ostrea edulis. Aquaculture 1982, 29:201-226.
-
(1982)
Aquaculture
, vol.29
, pp. 201-226
-
-
Jeffries, V.E.1
-
8
-
-
66149091176
-
Two pathogens of Greenshell mussel larvae, Perna canaliculus: Vibrio splendidus and V. coralliilyticus/neptunius-like isolate
-
Kesarcodi-Watson A., Kaspar H., Lategan M.J., Gibson L. Two pathogens of Greenshell mussel larvae, Perna canaliculus: Vibrio splendidus and V. coralliilyticus/neptunius-like isolate. J. Fish Dis. 2009, 32:499-507.
-
(2009)
J. Fish Dis.
, vol.32
, pp. 499-507
-
-
Kesarcodi-Watson, A.1
Kaspar, H.2
Lategan, M.J.3
Gibson, L.4
-
9
-
-
84863230041
-
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., Yi H., Won S., Chun J. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 2012, 62:716-721.
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
Yi, H.10
Won, S.11
Chun, J.12
-
10
-
-
0031776060
-
Vibrio pectenicida sp. nov., a pathogen of scallop (Pecten maximus) larvae
-
Lambert C., Nicolas J.L., Cilia V., Corre S. Vibrio pectenicida sp. nov., a pathogen of scallop (Pecten maximus) larvae. Int. J. Syst. Bacteriol. 1998, 48:481-487.
-
(1998)
Int. J. Syst. Bacteriol.
, vol.48
, pp. 481-487
-
-
Lambert, C.1
Nicolas, J.L.2
Cilia, V.3
Corre, S.4
-
11
-
-
0001857117
-
16S/23S rRNA sequencing
-
Wiley, London, E. Stackebrandt, M. Goodfellow (Eds.)
-
Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, London. E. Stackebrandt, M. Goodfellow (Eds.).
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
12
-
-
33645324459
-
Fast and reliable MALDI-TOF MS based microorganism identification
-
Maier T., Klepel S., Renner U., Kostrzewa M. Fast and reliable MALDI-TOF MS based microorganism identification. Nat. Methods 2006, 3. 10.1038/nmeth870.
-
(2006)
Nat. Methods
, vol.3
-
-
Maier, T.1
Klepel, S.2
Renner, U.3
Kostrzewa, M.4
-
13
-
-
44849093213
-
Identification of Vibrio spp. with a set of dichotomous keys
-
Noguerola I., Blanch A.R. Identification of Vibrio spp. with a set of dichotomous keys. J. Appl. Microbiol. 2008, 105:175-185.
-
(2008)
J. Appl. Microbiol.
, vol.105
, pp. 175-185
-
-
Noguerola, I.1
Blanch, A.R.2
-
14
-
-
29244438504
-
Pathogenic bacteria isolated from disease outbreaks in shellfish hatcheries. First description of Vibrio neptunius as an oyster pathogen
-
Prado S., Romalde J.L., Montes J., Barja J.L. Pathogenic bacteria isolated from disease outbreaks in shellfish hatcheries. First description of Vibrio neptunius as an oyster pathogen. Dis. Aquat. Org. 2005, 67:209-215.
-
(2005)
Dis. Aquat. Org.
, vol.67
, pp. 209-215
-
-
Prado, S.1
Romalde, J.L.2
Montes, J.3
Barja, J.L.4
-
15
-
-
59849118316
-
-
(Ph.D. thesis), Department of Microbiology and Parasitology, University of Santiago de Compostela, Santiago de Compostela, Spain
-
Prado S. Microbiota Asociada a Criaderos de Moluscos: Patogénesis y Probiosis 2006, (Ph.D. thesis), Department of Microbiology and Parasitology, University of Santiago de Compostela, Santiago de Compostela, Spain.
-
(2006)
Microbiota Asociada a Criaderos de Moluscos: Patogénesis y Probiosis
-
-
Prado, S.1
-
16
-
-
84900021843
-
Vibrio ostreicida sp. nov., a new pathogen of bivalve larvae
-
Prado S., Dubert J., Romalde J.L., Toranzo A.E., Barja J.L. Vibrio ostreicida sp. nov., a new pathogen of bivalve larvae. Int. J. Syst. Evol. Microbiol. 2014, 64:1641-1646.
-
(2014)
Int. J. Syst. Evol. Microbiol.
, vol.64
, pp. 1641-1646
-
-
Prado, S.1
Dubert, J.2
Romalde, J.L.3
Toranzo, A.E.4
Barja, J.L.5
-
17
-
-
33646522417
-
Molecular fingerprinting of Vibrio tapetis strains using three PCR-based methods: ERIC-PCR, REP-PCR and RAPD
-
Rodríguez J.M., López-Romalde S., Beaz R., Alonso M.C., Castro D., Romalde J.L. Molecular fingerprinting of Vibrio tapetis strains using three PCR-based methods: ERIC-PCR, REP-PCR and RAPD. Dis. Aquat. Org. 2006, 69:175-183.
-
(2006)
Dis. Aquat. Org.
, vol.69
, pp. 175-183
-
-
Rodríguez, J.M.1
López-Romalde, S.2
Beaz, R.3
Alonso, M.C.4
Castro, D.5
Romalde, J.L.6
-
19
-
-
35648960851
-
Inferring the evolutionary history of vibrios by means of Multilocus Sequence Analysis
-
Sawabe T., Kita-Tsukamoto K., Thompson F.L. Inferring the evolutionary history of vibrios by means of Multilocus Sequence Analysis. J. Bacteriol. 2007, 21:7932-7936.
-
(2007)
J. Bacteriol.
, vol.21
, pp. 7932-7936
-
-
Sawabe, T.1
Kita-Tsukamoto, K.2
Thompson, F.L.3
-
20
-
-
84892159415
-
Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov
-
Sawabe T., Ogura Y., Matsumura Y., Feng G., Amin A.R., Mino S., Nakagawa S., Sawabe T., Kumar R., Fukui Y., Satomi M., Matsushima R., Thompson F.L., Gómez-Gil B., Christen R., Maruyama F., Kurokawa K., Hayashi T. Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Front. Microbiol. 2013, 4:414.
-
(2013)
Front. Microbiol.
, vol.4
, pp. 414
-
-
Sawabe, T.1
Ogura, Y.2
Matsumura, Y.3
Feng, G.4
Amin, A.R.5
Mino, S.6
Nakagawa, S.7
Sawabe, T.8
Kumar, R.9
Fukui, Y.10
Satomi, M.11
Matsushima, R.12
Thompson, F.L.13
Gómez-Gil, B.14
Christen, R.15
Maruyama, F.16
Kurokawa, K.17
Hayashi, T.18
-
21
-
-
0035989633
-
Report of the ad hoc committee for the reevaluation of the species definition in bacteriology
-
Stackebrandt E., Frederiksen W., Garrity G.M., Grimont P.A.D., Kämpfer P., Maiden M.C.J., Nesme X., Roselló-Mora R., Swings J., Trüper H.G., Vauterin L., Ward A.C., Whitman W.B. Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 2002, 52:1043-1047.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.D.4
Kämpfer, P.5
Maiden, M.C.J.6
Nesme, X.7
Roselló-Mora, R.8
Swings, J.9
Trüper, H.G.10
Vauterin, L.11
Ward, A.C.12
Whitman, W.B.13
-
22
-
-
33947302827
-
Taxonomic parameters revisited:tarnished gold standards
-
Stackebrandt E., Ebers J. Taxonomic parameters revisited:tarnished gold standards. Microbiol. Today 2006, 33:152-155.
-
(2006)
Microbiol. Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
23
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Stecher, G.3
Nei, M.4
Kumar, S.5
-
24
-
-
72449152187
-
Genomic taxonomy of vibrios
-
Thompson C.C., Vicente A.C.P., Souza R.C., Vasconcelos A.T.R., Vesth T., Alves N., Ussery D.W., Iida T., Thompson F.L. Genomic taxonomy of vibrios. BCM Evol. Biol. 2009, 9:258.
-
(2009)
BCM Evol. Biol.
, vol.9
, pp. 258
-
-
Thompson, C.C.1
Vicente, A.C.P.2
Souza, R.C.3
Vasconcelos, A.T.R.4
Vesth, T.5
Alves, N.6
Ussery, D.W.7
Iida, T.8
Thompson, F.L.9
-
25
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
26
-
-
25144436280
-
Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis
-
Thompson F.L., Gevers D., Thompson C.C., Dawyndt P., Naser S., Hoste B., Munn C.B., Swings J. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl. Environ. Microbiol 2005, 71:5107-5115.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 5107-5115
-
-
Thompson, F.L.1
Gevers, D.2
Thompson, C.C.3
Dawyndt, P.4
Naser, S.5
Hoste, B.6
Munn, C.B.7
Swings, J.8
-
27
-
-
34447540349
-
Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species
-
Thompson F.L., Gómez-Gil B., Vasconcelos A.T., Sawabe T. Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species. Appl. Environ. Microbiol. 2007, 73:4279-4285.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 4279-4285
-
-
Thompson, F.L.1
Gómez-Gil, B.2
Vasconcelos, A.T.3
Sawabe, T.4
-
28
-
-
0013806536
-
Bacillary necrosis, a disease of larval and juvenil bivalve mollusks. I. Etiology and epizootioogy
-
Tubiash H.S., Chanley P.E., Leifson E. Bacillary necrosis, a disease of larval and juvenil bivalve mollusks. I. Etiology and epizootioogy. J. Bacteriol. 1965, 90:1036-1044.
-
(1965)
J. Bacteriol.
, vol.90
, pp. 1036-1044
-
-
Tubiash, H.S.1
Chanley, P.E.2
Leifson, E.3
-
29
-
-
0014816127
-
Marine vibrios associated with bacillary necrosis, a disease of larval and juvenile bivalve mollusks
-
Tubiash H.S., Colwell R.R., Sakazaki R. Marine vibrios associated with bacillary necrosis, a disease of larval and juvenile bivalve mollusks. J. Bacteriol. 1970, 103:272-273.
-
(1970)
J. Bacteriol.
, vol.103
, pp. 272-273
-
-
Tubiash, H.S.1
Colwell, R.R.2
Sakazaki, R.3
-
30
-
-
0028948030
-
PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection ad taxonomic analysis of Pseudomonas putida strains
-
Yamamoto S., Harayama S. PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection ad taxonomic analysis of Pseudomonas putida strains. Appl. Environ. Microbiol. 1995, 61:1104-1109.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1104-1109
-
-
Yamamoto, S.1
Harayama, S.2
-
31
-
-
0345628032
-
Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov
-
Ziemke F., Höfle M.G., Lalucat J., Roselló-Mora R. Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int. J. Syst. Bacteriol. 1998, 48:179-186.
-
(1998)
Int. J. Syst. Bacteriol.
, vol.48
, pp. 179-186
-
-
Ziemke, F.1
Höfle, M.G.2
Lalucat, J.3
Roselló-Mora, R.4
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