Molecular fingerprinting of Vibrio tapetis strains using three PCR-based methods: ERIC-PCR, REP-PCR and RAPD

Diseases of Aquatic Organisms

Volumn 69, Issue 2-3, 2006, Pages 175-183

  Rodríguez, José M ^a   López Romalde, Sonia ^a,b   Beaz, Roxana ^a   Alonso, M Carmen ^b   Castro, Dolores ^b   Romalde, Jesús L ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b UNIVERSITY OF MÁLAGA   (Spain)

Author keywords

ERIC PCR; RAPD; REP PCR; Typing; Vibrio tapetis

Indexed keywords

BACTERIAL DISEASE; DNA; EPIDEMIOLOGY; MOLLUSC;

EURASIA; EUROPE; FRANCE; SOUTHERN EUROPE; SPAIN; UNITED KINGDOM; WESTERN EUROPE;

BACTERIA (MICROORGANISMS); BIVALVIA; CERASTODERMA EDULE; ENTEROBACTERIACEAE; HIPPOGLOSSUS HIPPOGLOSSUS; VENERIDAE; VENERUPIS; VENERUPIS (RUDITAPES) PHILIPPINARUM; VIBRIO; VIBRIO TAPETIS;

EID: 33646522417     PISSN: 01775103     EISSN: None     Source Type: Journal    
DOI: 10.3354/dao069175     Document Type: Article

References (40)

1. Allam B, Paillard C, Howard A, Le Pennec M (2000) Isolation of the pathogen Vibrio tapetis and defense parameters in brown ring diseased Manila clams Ruditapes philippinarum cultivated in England. Dis Aquat Org 41:105-113
2. Aznar R, Ludwing W, Schleifer KH (1993) Ribotyping and randomly amplified polymorphic DNA analysis of Vibrio vulnificus biotypes. Syst Appl Microbiol 16:303-309
3. Bachellier S, Clément JM, Hofnung M (1999) Short palindromic repetitive DNA elements in enterobacteria: a survey. Res Microbiol 150:627-639
4. Bennasar A, Luna G, Cabrer B, Lalucat J (2002) Rapid identification of Salmonella typhmurium, S. enteritidis and S. virchow isolates by polymerase chain reaction based fingerprinting methods. Int Microbiol 3:31-38
5. Borrego JJ, Castro D, Luque A, Paillard C, Maes P, Garcia MT, Ventosa A (1996) Vibrio tapetis sp. nov., the causative agent of the brown ring disease affecting cultured clams. Int J Syst Bacteriol 46:480-484
6. Bruant G, Watt S, Quentin R, Rosenau A (2003) Typing of non-encapsulated Haemophilus strains by repetitive-element sequence-based PCR using intergenic dyad sequence. J Clin Microbiol 41:3473-3480
7. Castro D (1994) Patologías de origen bacteriano en almejas cultivadas Tapes decussatus y T. philippinarum. PhD thesis, University of Málaga
8. Castro D, Santamaria JA, Luque A, Martinez-Manzanares E, Borrego JJ (1996) Antigenic characterization of the etiological agent of the brown ring disease affecting Manila clams. Syst Appl Microbiol 19:231-239
9. Castro D, Romalde JL, Vila J, Magariños B, Luque A, Borrego JJ (1997) Intraspecific characterization of Vibrio tapetis strains by use of pulsed-field gel electrophoresis, ribotyping and plasmid profiling. Appl Environ Microbiol 63: 1449-1452
10. Chevalier P, Boula C, Paillard C (2003) Characterization by restriction fragment length polymorphism and plasmid profiling of Vibrio tapetis strains. J Basic Microbiol 5: 414-422
11. de Bruijn FJ (1992) Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl Environ Microbiol 58:2180-2187
12. Dice LR (1945) Measures of the amount of ecological association between species. Ecology 26:297-302
13. Figueras A, Robledo JAF, Novoa B (1996) Brown ring disease and parasites in clams (Ruditapes decussatus and R. philippinarum) from Spain and Portugal. J Shellfish Res 15: 363-368
14. Gillings M, Holley M (1997a) Amplification of anonymous DNA fragments using pairs of long primers generates reproducible DNA fingerprints that are sensitive to genetic variation. Electrophoresis 18:1512-1518
15. Gillings M, Holley M (1997b) Repetitive element PCR fingerprinting (REP-PCR) using enterobacterial repetitive intergenic consensus (ERIC) primers is not necessarily directed at ERIC elements. Lett Appl Microbiol 25:17-21
16. Hahm BK, Maldonado Y, Schreiber E, Bhunia AK, Nakatsu CH (2003) Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, Rep-PCR, PFGE, ribotyping and AFLP. J Microbiol Methods 53:387-399
17. Hulton CSJ, Higgins CF, Sharp PM (1991) ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol Microbiol 5:825-834
18. Inglis V, Colquhoun D, Pearson MD, Miyata M, Aoki T (1996) Analysis of DNA relationships among Aeromonas species by RAPD (randomly amplified polymorphic DNA) typing. Aquac Int 4:43-53
19. Jensen S, Samuelsen OB, Andersen K, Torkildsen L, Lambert C, Choquet G, Paillard C, Bergh O (2003) Characterization of strains of Vibrio splendidus and V. tapetis isolated from corkwing wrasse Symphodus melops suffering vibriosis. Dis Aquat Org 53:25-31
20. Khan A, McCarthy S, Wang RF, Cerniglia CE (2002) Characterization of United States outbreak isolates of Vibrio parahaemolyticus using enterobacterial repetitive intergenic consensus (ERIC) PCR and development of a rapid PCR method for detection of O3:K6 isolates. FEMS Microbiol Lett 206:209-214
21. Maes P (1992) Pathologie bactérienne chez deux invertébrés matins. La maladie des lésions vertes chez les échinides réguliers et la maladie de l'anneu brun de la palourde: Ruditapes philippinarum. PhD thesis, University of Bretagne Occidentale, Brest
22. Magarin̄os B, Toranzo AE, Barja JL, Romalde JL (2000) Existence of two geographically-linked clonal lineages in the bacterial fish pathogen Photobacterium damselae subsp. piscicida evidenced by random amplified polymorphic DNA analysis. Epidemiol Infect 125:213-219
23. Maluping R, Ravelo C, Lavilla-Pitogo C, Krovacek K, Romalde JL (2005) Molecular typing of Vibrio parahaemolyticus strains isolated from the Philippines by PCR-based methods. J Appl Microbiol 99:383-391
24. Novoa B, Luque A, Castro D, Borrego JJ, Figueras A (1998) Characterization and infectivity of four bacterial strains isolated from brown ring disease-affected clams. J Invertebr Pathol 71:34-41
25. O'Hici B, Olivier G, Power R (2000) Genetic diversity of the fish pathogen Aeromonas salmonicida demonstrated by random amplified polymorphic DNA and pulsed-field gel electrophoresis. Dis Aquat Org 39:109-119
26. Paillard C (2004) A short-review of brown ring disease, a vibriosis affecting clams, Ruditapes philippinarum and Ruditapes decussatus. Aquat Living Resour 17:467-475
27. Paillard C, Maes P, Oubella R (1994) Brown ring disease in clams. Annu Rev Fish Dis 4:219-240
28. Reid HI, Duncan HL, Laidler A, Hunter D, Birkbeck TH (2003) Isolation of Vibrio tapetis from cultivated Atlantic halibut (Hippoglossus hippoglossus L.). Aquaculture 221:65-74
29. Rivera IG, Chowdhury MAR, Huq A, Colwell RR, Martins MT (1995a) Genomic fingerprinting of Vibrio species using ERIC primers and PCR, abstract R-10. In: Abstracts of the 95th General Meeting of the American Society for Microbiology. American Society for Microbiology, Washington, DC, p R-10
30. Rivera IG, Chowdhury MAR, Huq A, Jacobs D, Martins MT, Colwell RR (1995b) Enterobacterial repetitive intergenic consensus sequences and the PCR to generate fingerprints of genomic DNAs from Vibrio cholerae O1, O139 and non-O1 strains. Appl Environ Microbiol 61:2898-2904
31. Rodríguez JM, Toranzo AE, Romalde JL (2003) Development and optimization of a new PCR-based protocol for rapid diagnosis of Vibrio tapetis, the causative agent of the brown ring disease in clams. In: Abstracts of the 11th International Conference of the European Association of Fish Pathologists, St. Juliens, p P-113
32. Romalde JL, Castro D, Magariños B, Lopez-Cortes L, Borrego JJ (2002) Comparison of ribotyping, randomly amplified polymorphic DNA and pulsed-field gel electrophoresis for molecular typing of Vibrio tapetis. Syst Appl Microbiol 25:544-550
33. Sawabe T, Thompson FL, Heyrman J, Cnockaert M and 10 others (2002) Fluorescent amplified fragment length polymorphism and repetitive extragenic palindrome-PCR fingerprinting reveal host-specific genetic diversity of Vibrio halioticoli-like strains isolated from the gut of Japanese abalone. Appl Environ Microbiol 68:4140-4144
34. Stern MJ, Ames GFL, Smith NH, Robinson EC, Higgins CF (1984) Repetitive extragenic palindromic sequences: a mayor component of the bacterial genome. Cell 37: 1015-1026
35. Toranzo AE, Santos Y, Barja JL (1997) Immunization with bacterial antigens: Vibrio infections. In: Gudding R, Lillehaug A, Midtlyng PJ, Brown F (eds) Fish Vaccinology. Karger, Basel, p 93-105
36. Versalovic J, Koeuth T, Lupski JR (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19: 6823-6831
37. Versalovic J, Schneider M, de Bruijn FJ, Lupski JR (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5:25-40
38. Welsh J, McClelland, M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18: 7213-7218
39. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6351-6357
40. Wong H, Lin C (2001) Evaluation of typing of Vibrio parahaemolyticus by three PCR methods using specific primers. J Clin Microbiol 39:4233-4240