메뉴 건너뛰기




Volumn 8, Issue 1, 2015, Pages 1-10

Identification of highly conserved regions in L-segment of crimean-Congo hemorrhagic fever virus and immunoinformatic prediction about potential novel vaccine

Author keywords

Epitope; Immunoinformatics; RNA dependent RNA polymerase; Single stranded RNA

Indexed keywords

CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; IXODIDA;

EID: 84940025535     PISSN: None     EISSN: 11786949     Source Type: Journal    
DOI: 10.2147/AABC.S75250     Document Type: Article
Times cited : (19)

References (57)
  • 2
    • 0001424127 scopus 로고    scopus 로고
    • Bunyaviridae: the viruses and their replication
    • Schmaljohn C, Hooper J. Bunyaviridae: the viruses and their replication. Fields Virol. 2001;2(2):20.
    • (2001) Fields Virol , vol.2 , Issue.2 , pp. 20
    • Schmaljohn, C.1    Hooper, J.2
  • 4
    • 0024297592 scopus 로고
    • Management of patients with suspected viral hemorrhagic, fever
    • Centers for Disease Control and Prevention (CDC). Management of patients with suspected viral hemorrhagic fever. MMWR Morb Mortal Wkly Rep. 1988;37:1.
    • (1988) MMWR., Morb Mortal Wkly, Rep. , vol.37 , pp. 1
  • 5
    • 33645102316 scopus 로고    scopus 로고
    • Crimean-Congo haemorrhagic fever
    • Ergönül Ö. Crimean-Congo haemorrhagic fever. Lancet Infect Dis. 2006;6(4):203-214.
    • (2006) Lancet Infect Dis , vol.6 , Issue.4 , pp. 203-214
    • Ergönül, Ö.1
  • 6
    • 84859513841 scopus 로고    scopus 로고
    • Crimean-Congo hemorrhagic fever virus: new outbreaks, new discoveries
    • Ergonul O. Crimean-Congo hemorrhagic fever virus: new outbreaks, new discoveries. Curr Opin Virol. 2012;2(2):215-220.
    • (2012) Curr Opin Virol , vol.2 , Issue.2 , pp. 215-220
    • Ergonul, O.1
  • 8
    • 8644231560 scopus 로고    scopus 로고
    • Crimean-Congo hemorrhagic fever
    • Whitehouse CA. Crimean-Congo hemorrhagic fever. Antiviral Res. 2004;64(3):145-160.
    • (2004) Antiviral Res , vol.64 , Issue.3 , pp. 145-160
    • Whitehouse, C.A.1
  • 9
    • 0016353434 scopus 로고
    • Seroepidemiology of Congo virus (related to the virus of Crimean haemorrhagic fever) in Nigeria
    • David-West TS, Cooke AR, David-West AS. Seroepidemiology of Congo virus (related to the virus of Crimean haemorrhagic fever) in Nigeria. Bull World Health Organ. 1974;51(5):543.
    • (1974) Bull World Health Organ , vol.51 , Issue.5 , pp. 543
    • David-West, T.S.1    Cooke, A.R.2    David-West, A.S.3
  • 10
    • 0025046385 scopus 로고
    • A fatal case of Crimean-Congo haemorrhagic fever in Mauritania: virological and serological evidence suggesting epidemic transmission
    • Gonzalez J-P, LeGuenno B, Guillaud M, Wilson ML. A fatal case of Crimean-Congo haemorrhagic fever in Mauritania: virological and serological evidence suggesting epidemic transmission. Trans R Soc Trop Med Hyg. 1990;84(4):573-576.
    • (1990) Trans R Soc Trop Med Hyg , vol.84 , Issue.4 , pp. 573-576
    • Gonzalez, J.-P.1    LeGuenno, B.2    Guillaud, M.3    Wilson, M.L.4
  • 11
    • 0025630464 scopus 로고
    • Distribution of Crimean-Congo hemorrhagic fever viral antibody in Senegal: environmental and vectorial correlates
    • Wilson ML, LeGuenno B, Guillaud M, Desoutter D, Gonzalez J-P, Camicas J-L. Distribution of Crimean-Congo hemorrhagic fever viral antibody in Senegal: environmental and vectorial correlates. Am J Trop Med Hyg. 1990;43(5):557-566.
    • (1990) Am J Trop Med Hyg , vol.43 , Issue.5 , pp. 557-566
    • Wilson, M.L.1    LeGuenno, B.2    Guillaud, M.3    Desoutter, D.4    Gonzalez, J.-P.5    Camicas, J.-L.6
  • 12
    • 84871124473 scopus 로고    scopus 로고
    • Factors driving the circulation and possible expansion of Crimean-Congo haemorrhagic fever virus in the western Palearctic
    • Estrada-Peña A, Ruiz-Fons F, Acevedo P, Gortazar C, la Fuente J. Factors driving the circulation and possible expansion of Crimean-Congo haemorrhagic fever virus in the western Palearctic. J Appl Microbiol. 2013;114(1):278-286.
    • (2013) J Appl Microbiol , vol.114 , Issue.1 , pp. 278-286
    • Estrada-Peña, A.1    Ruiz-Fons, F.2    Acevedo, P.3    Gortazar, C.4    la Fuente, J.5
  • 13
    • 0018798414 scopus 로고
    • The epidemiology of tick-borne Crimean-Congo hemorrhagic fever in Asia, Europe, and Africa
    • Hoogstraal H. The epidemiology of tick-borne Crimean-Congo hemorrhagic fever in Asia, Europe, and Africa. J Med Entomol. 1979;15(4):307-417.
    • (1979) J Med Entomol , vol.15 , Issue.4 , pp. 307-417
    • Hoogstraal, H.1
  • 14
    • 77954933074 scopus 로고    scopus 로고
    • Molecular biology and pathogenesis of Crimean-Congo hemorrhagic fever virus
    • Kraus AA, Mirazimi A. Molecular biology and pathogenesis of Crimean-Congo hemorrhagic fever virus. Future Virol. 2010;5(4):469-479.
    • (2010) Future Virol , vol.5 , Issue.4 , pp. 469-479
    • Kraus, A.A.1    Mirazimi, A.2
  • 15
    • 0031905556 scopus 로고    scopus 로고
    • Origin and evolution of viruses
    • Holland J, Domingo E. Origin and evolution of viruses. Virus Genes. 1998;16(1):13-21.
    • (1998) Virus Genes , vol.16 , Issue.1 , pp. 13-21
    • Holland, J.1    Domingo, E.2
  • 17
    • 0041402836 scopus 로고    scopus 로고
    • Epitope-based vaccines: an update on epitope identification, vaccine design and delivery
    • Sette A, Fikes J. Epitope-based vaccines: an update on epitope identification, vaccine design and delivery. Curr Opin Immunol. 2003;15(4): 461-470.
    • (2003) Curr Opin Immunol , vol.15 , Issue.4 , pp. 461-470
    • Sette, A.1    Fikes, J.2
  • 19
    • 0035989336 scopus 로고    scopus 로고
    • Computational immunology: the coming of age
    • Petrovsky N, Brusic V. Computational immunology: the coming of age. Immunol Cell Biol. 2002;80(3):248-254.
    • (2002) Immunol Cell Biol , vol.80 , Issue.3 , pp. 248-254
    • Petrovsky, N.1    Brusic, V.2
  • 20
    • 25844508410 scopus 로고    scopus 로고
    • A highly immunogenic trivalent T cell receptor peptide vaccine for multiple sclerosis
    • Bourdette DN, Edmonds E, Smith C, et al. A highly immunogenic trivalent T cell receptor peptide vaccine for multiple sclerosis. Mult Scler. 2005;11(5):552-561.
    • (2005) Mult Scler , vol.11 , Issue.5 , pp. 552-561
    • Bourdette, D.N.1    Edmonds, E.2    Smith, C.3
  • 21
    • 0034938975 scopus 로고    scopus 로고
    • A synthetic malaria vaccine elicits a potent CD8+ and CD4+ T lymphocyte immune response in humans Implications for vaccination strategies
    • López JA, Weilenman C, Audran R, et al. A synthetic malaria vaccine elicits a potent CD8+ and CD4+ T lymphocyte immune response in humans. Implications for vaccination strategies. Eur J Immunol. 2001;31(7):1989-1998.
    • (2001) Eur J Immunol , vol.31 , Issue.7 , pp. 1989-1998
    • López, J.A.1    Weilenman, C.2    Audran, R.3
  • 22
    • 10744230389 scopus 로고    scopus 로고
    • Development of a DNA vaccine designed to induce cytotoxic T lymphocyte responses to multiple conserved epitopes in HIV-1
    • Wilson CC, McKinney D, Anders M, et al. Development of a DNA vaccine designed to induce cytotoxic T lymphocyte responses to multiple conserved epitopes in HIV-1. J Immunol. 2003;171(10):5611-5623.
    • (2003) J Immunol , vol.171 , Issue.10 , pp. 5611-5623
    • Wilson, C.C.1    McKinney, D.2    Anders, M.3
  • 23
    • 17644419950 scopus 로고    scopus 로고
    • T cell vaccines for microbial infections
    • Robinson HL, Amara RR. T cell vaccines for microbial infections. Nat Med. 2005;11:S25-S32.
    • (2005) Nat Med , vol.11 , pp. S25-S32
    • Robinson, H.L.1    Amara, R.R.2
  • 24
    • 9144232912 scopus 로고    scopus 로고
    • UniProt: the universal protein knowledgebase
    • Apweiler R, Bairoch A, Wu CH, et al. UniProt: the universal protein knowledgebase. Nucleic Acids Res. 2004;32(suppl 1):D115-D119.
    • (2004) Nucleic Acids Res , vol.32 , pp. D110-D119
    • Apweiler, R.1    Bairoch, A.2    Wu, C.H.3
  • 25
    • 1642374106 scopus 로고    scopus 로고
    • Sequence determination of the Crimean-Congo hemorrhagic fever virus L segment
    • Kinsella E, Martin SG, Grolla A, Czub M, Feldmann H, Flick R. Sequence determination of the Crimean-Congo hemorrhagic fever virus L segment. Virology. 2004;321(1):23-28.
    • (2004) Virology , vol.321 , Issue.1 , pp. 23-28
    • Kinsella, E.1    Martin, S.G.2    Grolla, A.3    Czub, M.4    Feldmann, H.5    Flick, R.6
  • 26
    • 0036631642 scopus 로고    scopus 로고
    • Characterization of the glycoproteins of Crimean-Congo hemorrhagic fever virus
    • Sanchez AJ, Vincent MJ, Nichol ST. Characterization of the glycoproteins of Crimean-Congo hemorrhagic fever virus. J Virol. 2002;76(14): 7263-7275.
    • (2002) J Virol , vol.76 , Issue.14 , pp. 7263-7275
    • Sanchez, A.J.1    Vincent, M.J.2    Nichol, S.T.3
  • 27
    • 84969153365 scopus 로고    scopus 로고
    • BioEdit: A User-Friendly Biological Sequence Alignment Editor and analysis Program for Windows 95/98/NT
    • Paper presented at: Nucleic Acids Symposium Series; London
    • Hall TA. BioEdit: A User-Friendly Biological Sequence Alignment Editor and analysis Program for Windows 95/98/NT. Paper presented at: Nucleic Acids Symposium Series; 1999; London.
    • (1999)
    • Hall, T.A.1
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22(22):4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 29
    • 65449188232 scopus 로고    scopus 로고
    • Jalview version 2-a multiple sequence alignment editor and analysis workbench
    • Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009;25(9):1189-1191.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5
  • 30
    • 33847031827 scopus 로고    scopus 로고
    • VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
    • Doytchinova IA, Flower DR. VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinformatics. 2007;8(1):4.
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 4
    • Doytchinova, I.A.1    Flower, D.R.2
  • 32
    • 3843052528 scopus 로고    scopus 로고
    • Prediction of CTL epitopes using QM SVM and ANN techniques
    • Bhasin M, Raghava G. Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine. 2004;22(23):3195-3204.
    • (2004) Vaccine , vol.22 , Issue.23 , pp. 3195-3204
    • Bhasin, M.1    Raghava, G.2
  • 33
    • 10744222046 scopus 로고    scopus 로고
    • Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
    • Buus S, Lauemøller SL, Worning P, et al. Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach. Tissue Antigens. 2003;62(5):378-384.
    • (2003) Tissue Antigens , vol.62 , Issue.5 , pp. 378-384
    • Buus, S.1    Lauemøller, S.L.2    Worning, P.3
  • 34
    • 78549266517 scopus 로고    scopus 로고
    • Peptide binding predictions for HLA DR DP and DQ molecules
    • Wang P, Sidney J, Kim Y, et al. Peptide binding predictions for HLA DR, DP and DQ molecules. BMC Bioinformatics. 2010;11(1):568.
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 568
    • Wang, P.1    Sidney, J.2    Kim, Y.3
  • 35
    • 42949139524 scopus 로고    scopus 로고
    • A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
    • Wang P, Sidney J, Dow C, Mothe B, Sette A, Peters B. A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach. PLoS Comput Biol. 2008;4(4):e1000048.
    • (2008) PLoS Comput Biol , vol.4 , Issue.4
    • Wang, P.1    Sidney, J.2    Dow, C.3    Mothe, B.4    Sette, A.5    Peters, B.6
  • 36
    • 25444476693 scopus 로고    scopus 로고
    • Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
    • Peters B, Sette A. Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. BMC Bioinformatics. 2005;6(1):132.
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 132
    • Peters, B.1    Sette, A.2
  • 37
    • 0036498602 scopus 로고    scopus 로고
    • Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response
    • Nair DT, Singh K, Siddiqui Z, Nayak BP, Rao KV, Salunke DM. Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response. J Immunol. 2002;168(5):2371-2382.
    • (2002) J Immunol , vol.168 , Issue.5 , pp. 2371-2382
    • Nair, D.T.1    Singh, K.2    Siddiqui, Z.3    Nayak, B.P.4    Rao, K.V.5    Salunke, D.M.6
  • 38
    • 0025605617 scopus 로고
    • A semi-empirical method for prediction of antigenic determinants on protein antigens
    • Kolaskar A, Tongaonkar PC. A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett. 1990;276(1): 172-174.
    • (1990) FEBS Lett , vol.276 , Issue.1 , pp. 172-174
    • Kolaskar, A.1    Tongaonkar, P.C.2
  • 39
    • 0022249654 scopus 로고
    • Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide
    • Emini EA, Hughes JV, Perlow D, Boger J. Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol. 1985;55(3):836-839.
    • (1985) J Virol , vol.55 , Issue.3 , pp. 836-839
    • Emini, E.A.1    Hughes, J.V.2    Perlow, D.3    Boger, J.4
  • 40
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • Larsen JE, Lund O, Nielsen M. Improved method for predicting linear B-cell epitopes. Immunome Res. 2006;2(1):2.
    • (2006) Immunome Res , vol.2 , Issue.1 , pp. 2
    • Larsen, J.E.1    Lund, O.2    Nielsen, M.3
  • 42
    • 0030339738 scopus 로고    scopus 로고
    • AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR
    • Laskowski RA, Rullmann JAC, MacArthur MW, Kaptein R, Thornton JM. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR. 1996;8(4): 477-486.
    • (1996) J Biomol NMR , vol.8 , Issue.4 , pp. 477-486
    • Laskowski, R.A.1    Rullmann, J.A.C.2    MacArthur, M.W.3    Kaptein, R.4    Thornton, J.M.5
  • 43
    • 79551613290 scopus 로고    scopus 로고
    • Toward the estimation of the absolute quality of individual protein structure models
    • Benkert P, Biasini M, Schwede T. Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics. 2011;27(3):343-350.
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 343-350
    • Benkert, P.1    Biasini, M.2    Schwede, T.3
  • 44
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
    • Arnold K, Bordoli L, Kopp J, Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics. 2006;22(2):195-201.
    • (2006) Bioinformatics , vol.22 , Issue.2 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 46
    • 48449095267 scopus 로고    scopus 로고
    • PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
    • Garcia-Boronat M, Diez-Rivero CM, Reinherz EL, Reche PA. PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic Acids Res. 2008;36(Suppl 2): W35-W41.
    • (2008) Nucleic Acids Res , vol.36 , pp. W35-W41
    • Garcia-Boronat, M.1    Diez-Rivero, C.M.2    Reinherz, E.L.3    Reche, P.A.4
  • 47
    • 33747871140 scopus 로고    scopus 로고
    • AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
    • Saha S, Raghava G. AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Res. 2006;34(Suppl 2): W202-W209.
    • (2006) Nucleic Acids Res , vol.34 , pp. W202-W209
    • Saha, S.1    Raghava, G.2
  • 48
    • 39549095936 scopus 로고    scopus 로고
    • Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines
    • Bui H-H, Sidney J, Li W, Fusseder N, Sette A. Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines. BMC Bioinformatics. 2007; 8(1):361.
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 361
    • Bui, H.-H.1    Sidney, J.2    Li, W.3    Fusseder, N.4    Sette, A.5
  • 49
    • 3242677841 scopus 로고    scopus 로고
    • Role of CD8+ T cells in control of West Nile virus infection
    • Shrestha B, Diamond MS. Role of CD8+ T cells in control of West Nile virus infection. J Virol. 2004;78(15):8312-8321.
    • (2004) J Virol , vol.78 , Issue.15 , pp. 8312-8321
    • Shrestha, B.1    Diamond, M.S.2
  • 50
    • 84870535020 scopus 로고    scopus 로고
    • A novel approach to vaccine design -epitope-based vaccines
    • Arnon R. A novel approach to vaccine design - epitope-based vaccines. FEBS J. 2006;273:33-34.
    • (2006) FEBS J , vol.273 , pp. 33-34
    • Arnon, R.1
  • 52
    • 84897982928 scopus 로고    scopus 로고
    • A novel vaccine against Crimean-Congo haemorrhagic fever protects 100% of animals against lethal challenge in a mouse model
    • Buttigieg KR, Dowall SD, Findlay-Wilson S, et al. A novel vaccine against Crimean-Congo haemorrhagic fever protects 100% of animals against lethal challenge in a mouse model. PLoS One. 2014;9(3):e91516.
    • (2014) PLoS One , vol.9 , Issue.3
    • Buttigieg, K.R.1    Dowall, S.D.2    Findlay-Wilson, S.3
  • 53
    • 84862505339 scopus 로고    scopus 로고
    • Characterization of human coronavirus etiology in Chinese adults with acute upper respiratory tract infection by real-time RT-PCR assays
    • Lu R, Yu X, Wang W, et al. Characterization of human coronavirus etiology in Chinese adults with acute upper respiratory tract infection by real-time RT-PCR assays. PLoS One. 2012;7(6):e38638.
    • (2012) PLoS One , vol.7 , Issue.6
    • Lu, R.1    Yu, X.2    Wang, W.3
  • 54
    • 58149087854 scopus 로고    scopus 로고
    • In silico vaccine design based on molecular simulations of rhinovirus chimeras presenting HIV-1 gp41 epitopes
    • Lapelosa M, Gallicchio E, Arnold GF, Arnold E, Levy RM. In silico vaccine design based on molecular simulations of rhinovirus chimeras presenting HIV-1 gp41 epitopes. J Mol Biol. 2009;385(2): 675-691.
    • (2009) J Mol Biol , vol.385 , Issue.2 , pp. 675-691
    • Lapelosa, M.1    Gallicchio, E.2    Arnold, G.F.3    Arnold, E.4    Levy, R.M.5
  • 55
    • 82555195175 scopus 로고    scopus 로고
    • A computational approach for identification of epitopes in dengue virus envelope protein: a step towards designing a universal dengue vaccine targeting endemic regions
    • Chakraborty S, Chakravorty R, Ahmed M, et al. A computational approach for identification of epitopes in dengue virus envelope protein: a step towards designing a universal dengue vaccine targeting endemic regions. In Silico Biol. 2010;10(5):235-246.
    • (2010) In Silico Biol , vol.10 , Issue.5 , pp. 235-246
    • Chakraborty, S.1    Chakravorty, R.2    Ahmed, M.3
  • 56
    • 84906730613 scopus 로고    scopus 로고
    • Design of an epitope-based peptide vaccine against spike protein of human corona virus: an in silico approach
    • Oany AR, Emran AA, Jyoti TP. Design of an epitope-based peptide vaccine against spike protein of human corona virus: an in silico approach. Drug Des Devel Ther. 2014;8:1139-1149.
    • (2014) Drug Des Devel Ther , vol.8 , pp. 1139-1149
    • Oany, A.R.1    Emran, A.A.2    Jyoti, T.P.3
  • 57
    • 84900851672 scopus 로고    scopus 로고
    • In silico predicted mycobacterial epitope elicits in vitro T-cell responses
    • Khan MK, Zaman S, Chakraborty S, et al. In silico predicted mycobacterial epitope elicits in vitro T-cell responses. Mol Immunol. 2014;61(1):16-22.
    • (2014) Mol Immunol , vol.61 , Issue.1 , pp. 16-22
    • Khan, M.K.1    Zaman, S.2    Chakraborty, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.