Bacillus dabaoshanensis sp. nov., a Cr(VI)-tolerant bacterium isolated from heavy-metal-contaminated soil

Archives of Microbiology

Volumn 197, Issue 4, 2015, Pages 513-520

  Cui, Xiaowen ^a,b   Wang, Yueqiang ^b   Liu, Jing ^b   Chang, Ming ^c   Zhao, Yong ^a   Zhou, Shungui ^b   Zhuang, Li ^b  

^a SHANGHAI OCEAN UNIVERSITY   (China)

^b GUANGDONG INSTITUTE OF ECO ENVIRONMENTAL AND SOIL SCIENCES   (China)

^c CHINESE RESEARCH ACADEMY OF ENVIRONMENTAL SCIENCES   (China)

Author keywords

Bacillus dabaoshanensis sp. nov; Cr(VI) tolerant bacterium; Polyphasic characterization; Taxonomy

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; CHROMIUM; CHROMIUM HEXAVALENT ION; FATTY ACID; HEAVY METAL; RNA 16S; SOIL; SOIL POLLUTANT;

ANTIBIOTIC RESISTANCE; BACILLUS; BACTERIUM IDENTIFICATION; CHEMISTRY; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; MOLECULAR GENETICS; SOIL; SOIL POLLUTANT;

BACILLUS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARDIOLIPINS; CHROMIUM; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; FATTY ACIDS; METALS, HEAVY; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

EID: 84939952805     PISSN: 03028933     EISSN: 1432072X     Source Type: Journal    
DOI: 10.1007/s00203-015-1082-7     Document Type: Article

References (34)

1. Adriano DC (2001) Trace elements in terrestrial environments: biogeochemistry, bioavailability, and risks of metals. Springer, New York
2. Albert RA, Archambault J, Rossello-Mora R, Tindall BJ, Matheny M (2005) Bacillus acidicola sp. nov., a novel mesophilic, acidophilic species isolated from acidic Sphagnum peat bogs in Wisconsin. Int J Syst Evol Microbiol 55:2125–2130
3. Aleem A, Isar J, Malik A (2003) Impact of long-term application of industrial wastewater on the emergence of resistance traits in Azotobacterchroococcum isolated from rhizosphere soil. Bioresour Technol 86:7–13
4. Chen JM, Hao OJ (1998) Microbial chromium (VI) reduction. Crit Rev Environ Sci Technol 28:219–251
5. Collins M, Pirouz T, Goodfellow M, Minnikin D (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230
6. Desai C, Jain K, Madamwar D (2008) Hexavalent chromate reductase activity in cytosolic fractions of Pseudomonas sp. G1DM21 isolated from Cr(VI) contaminated industrial landfill. Process Biochem 43:713–721
7. Dhal B, Thatoi H, Das N, Pandey BD (2010) Reduction of hexavalent chromium by Bacillus sp. isolated from chromite mine soils and characterization of reduced product. J Chem Technol Biotechnol 85:1471–1479
8. Dong X, Cai M (2001) Manual of systematic and determinative bacteriology. Science Press, Beijing
9. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229
10. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
11. Gonzalez C, Ackerley D, Park C, Matin A (2003) A soluble flavoprotein contributes to chromate reduction and tolerance by Pseudomonas putida. Acta Biotechnol 23:233–239
12. Han L, Yang G, Zhou X, Yang D, Hu P, Lu Q, Zhou S (2013) Bacillus thermocopriae sp. nov., isolated from a compost. Int J Syst Evol Microbiol 63:3024–3029
13. He M, Li X, Guo L, Susan JM, Christopher R, Wang G (2010) Characterization and genomic analysis of chromate resistant and reducing Bacillus cereus strain SJ1. BMC Microbiol 10:221
14. Ishibashi Y, Cervantes C, Silver S (1990) Chromium reduction in Pseudomonas putida. Appl Environ Microbiol 56:2268–2270
15. Kämpfer P (1994) Limits and possibilities of total fatty acid analysis for classification and identification of Bacillus species. Syst Appl Microbiol 17:86–98
16. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeom YS, Lee JH, Yi H, Won S, Chun H (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
17. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120
18. Li J, Yang G, Wu M, Zhao Y, Zhou S (2014) Bacillus huizhouensis sp. nov., isolated from a paddy field soil. Anton Leeuw Int JG 106:357–363
19. Logan NA, Lebbe L, Verhelst A, Goris J, Forsyth G, Rodríguez-Díaz M, Heyndrickx M, Vos PD (2004) Bacillus shackletonii sp. nov., from volcanic soil on Candlemas Island, South Sandwich archipelago. Int J Syst Evol Microbiol 54:373–376
20. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167
21. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241
22. Narayani M, Shetty KV (2013) Chromium-resistant bacteria and their environmental condition for hexavalent chromium removal: a review. Crit Rev Environ Sci Technol 43:955–1009
23. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical note 101. MIDI Inc, newark
24. Sau GB, Chatterjee S, Mukherjee SK (2010) Chromate reduction by cell-free extract of Bacillus firmus KUCr1. Pol J Microbiol 59:185–190
25. Seiler H, Wenning M, Schmidt V, Scherer S (2013) Bacillus gottheilii sp. nov., isolated from a pharmaceutical manufacturing site. Int J Syst Evol Microbiol 63:867–872
26. Slobodkina G, Bonch-Osmolovskaya E, Slobodkin A (2007) Reduction of chromate, selenite, tellurite, and iron (III) by the moderately thermophilic bacterium Bacillus thermoamylovorans SKC1. Microbiol 76:530–534
27. Tamaoka J, Katayama-Fujimura Y, Kuraishi H (1983) Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Microbiol 54:31–36
28. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetic analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
29. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
30. Vaishampayan P, Probst A, Krishnamurthi S, Ghosh S, Osman S, McDowall A, Ruckmani A, Mayilraj S, Venkateswaran K (2010) Bacillus horneckiae sp. nov., isolated from a spacecraft-assembly clean room. Int J Syst Evol Microbiol 60:1031–1037
31. Vaz-Moreira I, Figueira V, Lopes AR, Lobo-da-Cunha A, Spröer C, Schumann P, Nunes OC, Manaia CM (2012) Bacillus purgationiresistans sp. nov., isolated from a drinking-water treatment plant. Int J Syst Evol Microbiol 62:71–77
32. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703
33. Zhang Jianli, Wang Jiewei, Fang Caiyuan, Song Fei, Xin Yuhua, Qu Lei, Ding Kai (2010) Bacillus oceanisediminis sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 60:2924–2929
34. Zhang L, Wu GL, Wang Y, Dai J, Fang CX (2011) Bacillus deserti sp. nov., a novel bacterium isolated from the desert of Xinjiang China. Anton Leeuw Int JG 99:221–229