Detection of Pantoea stewartii from sweet corn leaves by loop-mediated isothermal amplification (LAMP)

Journal of General Plant Pathology

Volumn 81, Issue 3, 2015, Pages 173-179

  Uematsu, Hiroshi ^a   Inoue, Yasuhiro ^a   Ohto, Yasuo ^a  

^a FOOD RESEARCH INSTITUTE   (Japan)

Author keywords

Diagnostics; Loop mediated isothermal amplification (LAMP); Pantoea stewartii

Indexed keywords

EID: 84939947596     PISSN: 13452630     EISSN: 1610739X     Source Type: Journal    
DOI: 10.1007/s10327-015-0580-4     Document Type: Article

References (19)

1. Coplin DL, Majerczak DR (1990) Extracellular polysaccharide genes in Erwinia stewartii: directed mutagenesis and complementation analysis. Mol Plant-Microbe Interact 3:286–292
2. Coplin DL, Majerczak DR, Zhang Y, Kim WS, Jock S, Geider K (2002) Identification of Pantoea stewartii subsp. stewartii by PCR and strain differentiation by PFGE. Plant Dis 86:304–311
3. Gehring I, Wensing A, Gernold M, Wiedemann W, Coplin DL, Geider K (2014) Molecular differentiation of Pantoeastewartii subsp. indologenes from subspecies stewartii and identification of new isolates from maize seeds. J Appl Microbiol 116:1553–1562
4. Harper SJ, Ward LI, Clover GRG (2010) Development of LAMP and real-time PCR methods for the rapid detection of Xylellafastidiosa for quarantine and field applications. Phytopathology 100:1282–1288
5. IPPC (International Plant Protection Convention) (2002) International Standards for Phytosanitary Measures: Diagnostic protocols for regulated pests. Pub No 27. Food and Agriculture Organization of the United Nations, Rome. http://www.ippc.int/sites/default/files/documents/20140428/ispm_27_2006_en_2014-04-28_201404281447–141.32%20KB.pdf. Cited 5 Nov 2014
6. Kaneko H, Kawana T, Fukushima E, Suzutani T (2007) Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. J Biochem Biophys Methods 70:499–501
7. Kubota R, Vine BG, Alvarez AM, Jenkins DM (2008) Detection of Ralstonia solanacearum by loop-mediated isothermal amplification. Phytopathology 98:1045–1051
8. Lamka GL, Hill JH, McGee DC, Braun EJ (1991) Development of an immunosorbent assay for seedborne Erwinia stewartii in corn seeds. Phytopathology 81:839–846
9. MAFF Plant Protection Station (2014) Plants and plant products subject to phytosanitary inspection at growing site. Internet Resource: http://www.pps.go.jp/english/faq/import/seeds.html. Cited 19 Sep 2014
10. Mergaert J, Verdonck L, Kersters K (1993) Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as Pantoeaananas (Serrano 1928) comb. nov. and Pantoea stewartii (Smith 1898) comb, nov., respectively, and description of Pantoea stewartii subsp. indologenes subsp. nov. Int J Syst Evol Microbiol 43:162–173
11. Nagamine K, Hase T, Notomi T (2002) Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes 16:223–229
12. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:E63
13. Okuda M, Matsumoto M, Tanaka Y, Subandiyah S, Iwanami T (2005) Characterization of the tufB-secE-nusG-rplKAJL-rpoB gene cluster of the citrus greening organism and detection by loop-mediated isothermal amplification. Plant Dis 89:705–711
14. Okuda M, Kawano S, Murayama Y, Iwanami T (2008) Conditions for loop-mediated isothermal amplification (LAMP) and a nonmacerating DNA extraction method to assay for huanglongbing (citrus greening) disease (in Japanese with English summary). Jpn J Phytopathol 74:316–320
15. Oya H, Nakagawa H, Saito N, Uematsu H, Ohara T (2008) Detection of Acidovorax avenae subsp. citrulli from seed using LAMP method (in Japanese with English summary). Jpn J Phytopathol 74:304–310
16. Pataky J, Ikin R (2003) Pest risk analysis: the risk of introducing Erwinia stewartii in maize seed. International Seed Federation, Geneva. http://www.worldseed.org/cms/medias/file/TradeIssues/PhytosanitaryMatters/PestRiskAnalysis/Erwinia_stewartii.pdf. Cited 5 Nov 2014
17. Tambong JT, Mwange KN, Bergeron M, Ding T, Mandy F, Reid LM, Zhu X (2008) Rapid detection and identification of the bacterium Pantoea stewartii in maize by TaqMan real-time PCR assay targeting the cpsD gene. J Appl Microbiol 104:1525–1537
18. Wensing A, Zimmermann S, Geider K (2010) Identification of the corn pathogen Pantoea stewartii by mass spectrometry of whole-cell extracts and its detection with novel PCR primers. Appl Environ Microbiol 76:6248–6256
19. Xu R, Chen Q, Djama ZR, Tambong JT (2010) Miniprimer PCR assay targeting multiple genes: a new rapid and reliable tool for genotyping Pantoea stewartii subsp. stewartii. Lett Appl Microbiol 50:216–222